| MMDBm0000015 | Akkermansia muciniphila ATCC BAA-835 | Bacteria | Verrucomicrobia | Human | Metabolic reconstruction | VMH |
| MMDBm0810781 | Kallipyga massiliensis ph2 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000682 | Helcococcus kunzii | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0002713 | Thermotoga neapolitana DSM 4359 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0002641 | Sulfolobus solfataricus P2 | Archaea | Crenarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0000572 | Saccharolobus solfataricus | Archaea | Crenarchaeota | Human Feces | Microbial culture | Not Available |
| MMDBm0000531 | Sphaerobacter thermophilus | Bacteria | Chloroflexi | Not Available | Microbial culture | Not Available |
| MMDBm0641709 | Brachyspira pilosicoli B2904 | Bacteria | Spirochaetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000721 | Brachyspira pilosicoli | Bacteria | Spirochaetes | Not Available | Not Available | VMH |
| MMDBm0000789 | Treponema primitia | Bacteria | Spirochaetes | Not Available | Microbial culture | Not Available |
| MMDBm0001089 | Treponema succinifaciens | Bacteria | Spirochaetes | Not Available | Microbial culture | Not Available |
| MMDBm0000310 | Treponema bryantii | Bacteria | Spirochaetes | Not Available | Microbial culture | Not Available |
| MMDBm0070183 | Sarocladium strictum | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0084811 | Microdochium nivale | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0000585 | Candida tropicalis | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0639411 | Schlesneria paludicola | Bacteria | Planctomycetes | Not Available | Not Available | VMH |
| MMDBm0639412 | Schlesneria paludicola DSM 18645 | Bacteria | Planctomycetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809204 | Selenomonas ruminantium AC2024 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000215 | Megamonas hypermegale | Bacteria | Firmicutes | Human Feces | Microbial culture | Not Available |
| MMDBm0809111 | Mitsuokella jalaludinii DSM 13811 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000402 | Selenomonas ruminantium | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0809112 | Mitsuokella multacida DSM 20544 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000969 | Megamonas funiformis | Bacteria | Firmicutes | Human Feces | Microbial culture | Not Available |
| MMDBm0809098 | Megamonas funiformis YIT 11815 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
