| MMDBm0000015 | Akkermansia muciniphila ATCC BAA-835 | Bacteria | Verrucomicrobia | Human | Metabolic reconstruction | VMH |
| MMDBm0000014 | Akkermansia muciniphila | Bacteria | Verrucomicrobia | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0810309 | Anaerococcus vaginalis ATCC 51170 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810781 | Kallipyga massiliensis ph2 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810479 | Peptoniphilus indolicus ATCC 29427 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0815849 | Fervidobacterium gondwanense | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0000580 | Thermotoga neapolitana | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0002712 | Thermotoga sp. RQ2 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0002713 | Thermotoga neapolitana DSM 4359 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0002710 | Thermotoga petrophila RKU-1 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0001963 | Thermotoga maritima MSB8 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0000572 | Saccharolobus solfataricus | Archaea | Crenarchaeota | Human Feces | Microbial culture | Not Available |
| MMDBm0002643 | Sulfolobus acidocaldarius DSM 639 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002641 | Sulfolobus solfataricus P2 | Archaea | Crenarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0000571 | Sulfolobus acidocaldarius | Archaea | Crenarchaeota | Not Available | Microbial culture | Not Available |
| MMDBm0000531 | Sphaerobacter thermophilus | Bacteria | Chloroflexi | Not Available | Microbial culture | Not Available |
| MMDBm0000107 | Cloacibacillus evryensis DSM 19522 | Bacteria | Synergistetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0645329 | Pyramidobacter piscolens W5455 | Bacteria | Synergistetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001089 | Treponema succinifaciens | Bacteria | Spirochaetes | Not Available | Microbial culture | Not Available |
| MMDBm0000310 | Treponema bryantii | Bacteria | Spirochaetes | Not Available | Microbial culture | Not Available |
| MMDBm0000789 | Treponema primitia | Bacteria | Spirochaetes | Not Available | Microbial culture | Not Available |
| MMDBm0641709 | Brachyspira pilosicoli B2904 | Bacteria | Spirochaetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0060570 | Trichoderma reesei | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0084811 | Microdochium nivale | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0060573 | Trichoderma reesei RUT C-30 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
