| MMDBm0000790 | Thermus igniterrae | Bacteria | Deinococcus-thermus | Not Available | Microbial culture | Not Available |
| MMDBm0000220 | Myroides injenensis | Bacteria | Bacteroidetes | Not Available | Microbial culture | Not Available |
| MMDBm0000138 | Clostridium sporogenes | Bacteria | Firmicutes | Human Vaginal secretion | Microbial culture | Not Available |
| MMDBm0000586 | Leishmania major | Eukaryota | Euglenozoa | Not Available | Microbial culture | Not Available |
| MMDBm0000589 | Trypanosoma cruzi | Eukaryota | Euglenozoa | Not Available | Microbial culture | Not Available |
| MMDBm0000890 | Parvularcula bermudensis | Bacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0001027 | Acetoanaerobium sticklandii | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000219 | Methylobacterium nodulans | Bacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0001077 | Paraclostridium bifermentans | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000237 | Peptostreptococcus anaerobius | Bacteria | Firmicutes | Human | Microbial culture | Not Available |
| MMDBm0001102 | Bilophila | Bacteria | Proteobacteria | Human Feces | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001099 | Clostridium nexile | Bacteria | Firmicutes | Not Available | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001101 | Rothia | Bacteria | Actinobacteria | Human | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0001161 | Subdoligranulum sp. 4_3_54A2FAA | Bacteria | Firmicutes | Human Stool | Indirect association between microbiota composition and metabolites measured in host biospecimen | Not Available |
| MMDBm0000588 | Trypanosoma brucei | Eukaryota | Euglenozoa | Goat Blood | Microbial culture | Not Available |
| MMDBm0000471 | Virgibacillus halodenitrificans | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000423 | Staphylococcus aureus | Bacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0029022 | Aspergillus fumigatus | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0029026 | Aspergillus fumigatus Af293 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0029017 | Aspergillus fischeri NRRL 181 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0030254 | Aspergillus sp. MF297-2 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0029075 | Aspergillus versicolor | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0001231 | Aquifex aeolicus VF5 | Bacteria | Aquificae | Not Available | Not Available | RHEA |
| MMDBm0001485 | Corynebacterium glutamicum ATCC 13032 | Bacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0649054 | Corynebacterium melassecola | Bacteria | Actinobacteria | Not Available | Not Available | RHEA |
