| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000584 | Candida albicans | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0099250 | Blastobotrys adeninivorans | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0098044 | Eremothecium gossypii ATCC 10895 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0002691 | Thermococcus onnurineus NA1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002425 | Pyrococcus furiosus DSM 3638 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002642 | Sulfolobus tokodaii str. 7 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001818 | Methanocaldococcus jannaschii DSM 2661 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002424 | Pyrococcus horikoshii OT3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001843 | Methanosarcina acetivorans C2A | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002690 | Thermococcus kodakarensis KOD1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002423 | Pyrococcus abyssi GE5 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0801127 | Hungatella hathewayi 12489931 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0541555 | Escherichia coli K-12 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001459 | Clostridium botulinum A str. ATCC 3502 | Bacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000220 | Myroides injenensis | Bacteria | Bacteroidetes | Not Available | Microbial culture | Not Available |
| MMDBm0000007 | Acinetobacter pittii ANC 4052 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000226 | Paenibacillus alvei DSM 29 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0815005 | Mycoplasma pneumoniae 309 | Bacteria | Tenericutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809578 | Dialister invisus DSM 15470 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002046 | Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0648904 | Corynebacterium amycolatum SK46 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002397 | Pseudomonas fluorescens Pf0-1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
