MiMeDB: Pyrococcus horikoshii OT3 (MMDBm0002424)

Microbe Identification

Microbe name

Pyrococcus horikoshii OT3

NCBI Taxonomy ID

70601

Microbe Taxonomy

Superkingdom

Archaea

Kingdom

Archaea

Phylum

Euryarchaeota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Pyrococcus

Species

horikoshii

Strain

OT3

Microbe Properties

Gram staining properties

Positive

Shape

Cocci

Mobility

Flagellar presence

Yes

Number of membranes

Oxygen preference

Anaerobe

Optimal temperature

Temperature range

Hyperthermophilic

Habitat

Aquatic

Biotic relationship

Free living

Cell arrangement

Not Available

Sporulation

Nonsporulating

Metabolism

Sulfur respiration

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012857	Adenosine triphosphate	ADP	Carbamate kinase	Phosphorylation	RHEA	34755880
MMDBr0012860	(2R)-2-phosphoglyceric acid	Water	Enolase	Enolization	RHEA	34755880
MMDBr0012883	D-Glyceraldehyde 3-phosphate	(2R)-3-phospho-glyceroyl phosphate	Glyceraldehyde-3-phosphate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0012884	D-Glyceraldehyde 3-phosphate	(2R)-3-phospho-glyceroyl phosphate	Glyceraldehyde-3-phosphate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0012889	Pyroglutamic acid	ADP	5-oxoprolinase	Hydrolysis	RHEA	34755880
MMDBr0012895	diphosphate	Phosphoribosyl pyrophosphate	Orotate phosphoribosyltransferase	Transfer of a ribosyl group	RHEA	34755880
MMDBr0012899	Guanosine triphosphate	Carbon dioxide	Phosphoenolpyruvate carboxykinase [GTP]	Phosphorylation	RHEA	34755880
MMDBr0013004	Adenosine triphosphate	Adenosine monophosphate	Phosphoenolpyruvate synthase	Synthesis	RHEA	34755880
MMDBr0013012	ADP	Adenosine monophosphate	ADP-dependent glucose/glucosamine kinase	Phosphorylation	RHEA	34755880
MMDBr0013026	Hydrogen Ion	Carbon dioxide	Orotidine 5'-phosphate decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0013027	Adenosine triphosphate	ADP	Cytidylate kinase	Phosphorylation	RHEA	34755880
MMDBr0013028	Water	alpha-Ketoglutarate	Glutamate dehydrogenase 2	Dehydrogenation	RHEA	34755880
MMDBr0013034	Water	Hydrogen Ion	Inosine-5'-monophosphate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013045	Alpha-D-glucose 6-phosphate	beta-D-Fructose 6-phosphate	Glucose-6-phosphate isomerase	Isomerization	RHEA	34755880
MMDBr0013046	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	(6S)-5,6,7,8-tetrahydrofolic acid	3-methyl-2-oxobutanoate hydroxymethyltransferase	Methylation	RHEA	34755880
MMDBr0013053	Phosphate	Adenine	S-methyl-5'-thioadenosine phosphorylase	Deamination; Phosphorylation	RHEA	34755880
MMDBr0013059	(1R,2S)-homoisocitrate	Oxoadipic acid	Homoisocitrate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013060	(1R,2S)-homoisocitrate	Oxoadipic acid	Homoisocitrate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013143	Putrescine	Hydrogen Ion	Polyamine aminopropyltransferase	Synthesis	RHEA	34755880
MMDBr0013164	alpha-Ketoglutarate	(2R)-Homocitric acid	Homocitrate synthase AksA	Synthesis	RHEA	34755880
MMDBr0013165	alpha-Ketoglutarate	(2R)-Homocitric acid	Homocitrate synthase AksA	Synthesis	RHEA	34755880
MMDBr0013170	Adenosine monophosphate	ADP	Adenylate kinase	Phosphorylation	RHEA	34755880
MMDBr0013179	Adenosine triphosphate	ADP	Replicase large subunit	Synthesis of a primer	RHEA	34755880
MMDBr0013196	5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole	5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate	N5-carboxyaminoimidazole ribonucleotide mutase	Intramolecular transfer of functional group	RHEA	34755880
MMDBr0013225	L-Dihydroorotic acid	Hydrogen Ion	Dihydroorotate dehydrogenase B (NAD(+)), catalytic subunit	Dehydrogenation	RHEA	34755880
MMDBr0013226	Adenosine triphosphate	ADP	Putative thymidylate kinase	Phosphorylation	RHEA	34755880
MMDBr0013229	(2R)-3-phosphoglyceric acid	2-O-(alpha-D-mannosyl)-3-phosphoglyceric acid	Mannosyl-3-phosphoglycerate synthase	Synthesis	RHEA	34755880
MMDBr0013264	Agmatine	Putrescine	Agmatinase	Hydrolysis of bond	RHEA	34755880
MMDBr0013274	Adenosine triphosphate	ADP	Homoserine kinase	Phosphorylation	RHEA	34755880
MMDBr0013309	Phosphoglycolic acid	Glycolic acid	Phosphoglycolate phosphatase	Dephosphorylation	RHEA	34755880
MMDBr0013339	aldehydo-D-ribose 5-phosphate	D-Ribulose 5-phosphate	Bifunctional ribokinase/ribose-5-phosphate isomerase A	Isomerization	RHEA	34755880
MMDBr0013343	CoA	CoA-disulfide	NAD(P)H coenzyme A polysulfide/persulfide reductase	Redox reaction; Reduction	RHEA	34755880
MMDBr0013344	CoA	CoA-disulfide	Coenzyme A disulfide reductase	Redox reaction; Reduction	RHEA	34755880
MMDBr0013347	beta-D-Fructose 1,6-bisphosphate	D-Glyceraldehyde 3-phosphate	Fructose-bisphosphate aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0013357	(2R)-3-phosphoglyceric acid	(2R)-3-phospho-glyceroyl phosphate	Phosphoglycerate kinase	Phosphorylation	RHEA	34755880
MMDBr0013378	L-Aspartic acid	D-Aspartic acid	Bacitracin synthase 3	Racemization; Synthesis	RHEA	34755880
MMDBr0013391	Water	alpha-Ketoglutarate	NAD-specific glutamate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013444	Adenosine triphosphate	Phosphoribosyl pyrophosphate	Ribose-phosphate pyrophosphokinase 1	Phosphorylation	RHEA	34755880
MMDBr0013458	Guanosine triphosphate	Guanosine diphosphate	Adenylosuccinate synthetase	Synthesis	RHEA	34755880
MMDBr0013470	(2R)-2-phosphoglyceric acid	(2R)-3-phosphoglyceric acid	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	Intramolecular transfer of functional group	RHEA	34755880
MMDBr0013473	Adenosine triphosphate	ADP	Thiamine-monophosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0013478	Hydrogen Ion	Carbon dioxide	S-adenosylmethionine decarboxylase proenzyme	Decarboxylation	RHEA	34755880
MMDBr0013481	(R)-mevalonate	(3S)-hydroxy-3-methylglutaryl-CoA	3-hydroxy-3-methylglutaryl-coenzyme A reductase	Reduction	RHEA	34755880
MMDBr0013489	adenosylcob(III)inamide-GDP	coenzyme B12	Adenosylcobinamide-GDP ribazoletransferase	Transfer of ribazole	RHEA	34755880
MMDBr0013511	(R)-Pantoate	2-Dehydropantoate	2-dehydropantoate 2-reductase	Reduction	RHEA	34755880
MMDBr0013512	2-Dehydropantoate	(R)-Pantoate	2-dehydropantoate 2-reductase	Reduction	RHEA	34755880
MMDBr0013547	Adenosine triphosphate	ADP	CTP synthase	Synthesis	RHEA	34755880
MMDBr0013578	Adenylsuccinic acid	Adenosine monophosphate	Adenylosuccinate lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0013579	Adenylsuccinic acid	Adenosine monophosphate	Adenylosuccinate lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0013583	3-Sulfinoalanine	Carbon dioxide	Cysteine/Cysteine sulfinic acid decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0013588	1-aminocyclopropane-1-carboxylic acid	2-oxobutanoic acid	1-aminocyclopropane-1-carboxylate deaminase	Deamination	RHEA	34755880
MMDBr0013613	(R)-mevalonate	Mevalonic acid-5P	Mevalonate kinase erg12	Phosphorylation	RHEA	34755880
MMDBr0013633	Adenosine triphosphate	diphosphate	Probable FAD synthase	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0013655	5-Phosphoribosylamine	ADP	Phosphoribosylamine--glycine ligase	Ligation	RHEA	34755880
MMDBr0013670	Hydrogen Ion	Agmatine	Pyruvoyl-dependent arginine decarboxylase AaxB	Decarboxylation	RHEA	34755880
MMDBr0013684	Hydrogen Ion	gamma-Aminobutyric acid	Glutamate decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0013728	(2E,6E,10E)-geranylgeranyl diphosphate	2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate	Digeranylgeranylglyceryl phosphate synthase	Synthesis	RHEA	34755880
MMDBr0013737	Glycolic acid	glyoxylate	Glyoxylate reductase	Reduction	RHEA	34755880
MMDBr0013784	D-Glyceraldehyde 3-phosphate	Dihydroxyacetone phosphate	Bifunctional PGK/TIM	Isomerization	RHEA	34755880
MMDBr0013792	Adenosine triphosphate	ADP	NAD kinase	Phosphorylation	RHEA	34755880
MMDBr0013852	2-O-(alpha-D-mannosyl)-3-phosphoglyceric acid	(2R)-2-O-(alpha-D-mannosyl)-glyceric acid	Glucosyl-3-phosphoglycerate phosphatase	Dephosphorylation	RHEA	34755880
MMDBr0013884	Hydrogen Ion	beta-Alanine	L-aspartate decarboxylase dtxS4	Decarboxylation	RHEA	34755880
MMDBr0013886	Carbamoylphosphate	Hydrogen Ion	Ornithine carbamoyltransferase	Transfer of a carbamoyl group	RHEA	34755880
MMDBr0013908	Guanosine triphosphate	Guanosine diphosphate	GTPase ArgK	Dephosphorylation; Hydrolysis; Nucleic acid synthesis and/or repair	RHEA	34755880
MMDBr0013921	(R)-4'-phosphopantetheine	3'-dephospho-CoA	Phosphopantetheine adenylyltransferase	Dephosphorylation	RHEA	34755880
MMDBr0013941	S-Methyl-5-thio-alpha-D-ribose 1-phosphate	5-Methylthioribulose 1-phosphate	5-deoxyribose 1-phosphate isomerase	Isomerization	RHEA	34755880
MMDBr0013946	Carbamoylphosphate	Hydrogen Ion	Protein pyrABCN	Transfer of a carbamoyl group	RHEA	34755880
MMDBr0013957	ADP	Adenosine monophosphate	ADP-specific phosphofructokinase	Phosphorylation	RHEA	34755880
MMDBr0013970	L-Alanine	D-Alanine	L-alanine/L-glutamate racemase	Racemization	RHEA	34755880
MMDBr0014003	(R)-Methylmalonyl-CoA	(S)-Methylmalonyl-CoA	Ethylmalonyl-CoA/methylmalonyl-CoA epimerase	Epimerization	RHEA	34755880
MMDBr0014024	Hydrogen Ion	Ammonium	5'-deoxyadenosine deaminase	Deamination	RHEA	34755880
MMDBr0014080	Adenosine triphosphate	Adenosine monophosphate	NH(3)-dependent NAD(+) synthetase	Synthesis	RHEA	34755880
MMDBr0014087	Hydrogen Ion	Hydrogen peroxide	Desulfoferrodoxin	Reduction	RHEA	34755880
MMDBr0014091	Adenosine triphosphate	diphosphate	Nicotinamide-nucleotide adenylyltransferase	Synthesis	RHEA	34755880
MMDBr0014102	NAD	Dihydroxyacetone phosphate	Glycerol-1-phosphate dehydrogenase [NAD(P)+]	Dehydrogenation	RHEA	34755880
MMDBr0014103	NADP(+)	Dihydroxyacetone phosphate	Glycerol-1-phosphate dehydrogenase [NAD(P)+]	Dehydrogenation	RHEA	34755880
MMDBr0014105	(S)-malate(2-)	Hydrogen Ion	Malate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014135	Water	Deoxyadenosine	Adenosylhomocysteinase	Reversible hydrolysis	RHEA	34755880
MMDBr0014146	alpha-Ketoglutarate	L-Glutamic acid	Probable aspartate/prephenate aminotransferase	Amine group addition	RHEA	34755880
MMDBr0014193	2-Methyl-4-amino-5-hydroxymethylpyrimidine diphosphate	diphosphate	Probable thiamine biosynthetic bifunctional enzyme	Synthesis	RHEA	34755880
MMDBr0014229	5-Amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate	(2S)-2-[5-Amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinic acid	Phosphoribosylaminoimidazole-succinocarboxamide synthase	Synthesis	RHEA	34755880
MMDBr0014236	dCTP	Deoxyuridine triphosphate	dCTP deaminase	Deamination	RHEA	34755880
MMDBr0014282	2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine	5-Aminoimidazole ribonucleotide	Bifunctional purine biosynthetic protein ADE5,7	Ligation	RHEA	34755880
MMDBr0014295	(2R)-3-phosphoglyceric acid	Carbon dioxide	Ribulose bisphosphate carboxylase large chain	Carboxylation	RHEA	34755880
MMDBr0014311	Isopentenyl pyrophosphate	Dimethylallylpyrophosphate	Isopentenyl-diphosphate Delta-isomerase	Isomerization	RHEA	34755880
MMDBr0014327	(2E,6E,10E)-geranylgeranyl diphosphate	diphosphate	Geranylgeranylglyceryl phosphate synthase	Synthesis	RHEA	34755880
MMDBr0014333	alpha-D-Glucosamine 1-phosphate	D-glucosamine 6-phosphate	Phosphoglucosamine mutase	Intramolecular transfer of functional group	RHEA	34755880
MMDBr0014353	adenosylcob(III)inamide-GDP	adenosylcob(III)alamin 5'-phosphate	Adenosylcobinamide-GDP ribazoletransferase	Transfer of ribazole	RHEA	34755880
MMDBr0014361	D-threo-Isocitric acid	alpha-Ketoglutarate	Isocitrate/homoisocitrate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014362	D-threo-Isocitric acid	alpha-Ketoglutarate	Isocitrate/homoisocitrate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014394	(2S)-2-[5-Amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinic acid	AICAR	Adenylosuccinate lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0014395	(2S)-2-[5-Amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinic acid	AICAR	Adenylosuccinate lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0014426	4-Methyl-5-(2-hydroxyethyl)-thiazole	4-methyl-5-(2-phosphooxyethyl)-thiazole	Probable thiamine biosynthetic bifunctional enzyme	Phosphorylation	RHEA	34755880
MMDBr0014437	L-Dihydroorotic acid	Hydrogen Ion	Dihydroorotase	Hydrolysis	RHEA	34755880
MMDBr0014447	Adenosine triphosphate	ADP	UMP-CMP kinase	Phosphorylation	RHEA	34755880
MMDBr0014461	diphosphate	Hydrogen Ion	Inorganic pyrophosphatase	Dephosphorylation	RHEA	34755880
MMDBr0014489	Adenosine triphosphate	ADP	Formate-dependent phosphoribosylglycinamide formyltransferase	Transfer of a formyl group	RHEA	34755880
MMDBr0014490	Adenosine triphosphate	ADP	Formate-dependent phosphoribosylglycinamide formyltransferase	Transfer of a formyl group	RHEA	34755880
MMDBr0014491	AICAR	Phosphoribosyl formamidocarboxamide	5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase	Synthesis	RHEA	34755880
MMDBr0014504	Cytidine triphosphate	CDP	Riboflavin kinase	Phosphorylation	RHEA	34755880
MMDBr0014505	Hydrogen Ion	Ammonium	5'-deoxyadenosine deaminase	Deamination	RHEA	34755880
MMDBr0014514	Adenosine triphosphate	ADP	Cytidylate kinase	Phosphorylation	RHEA	34755880
MMDBr0014524	Hydrogen Ion	Carbon dioxide	L-aspartate/L-glutamate decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0014574	2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate	CDP-2,3-bis-O-(geranylgeranyl)-sn-glycerol	CDP-archaeol synthase	Synthesis	RHEA	34755880
MMDBr0014578	Water	Hydrogen Ion	UDP-N-acetyl-D-mannosamine dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014591	Guanosine triphosphate	7,8-dihydroneopterin 2',3'-cyclic phosphate	GTP cyclohydrolase MptA	Hydrolysis	RHEA	34755880
MMDBr0014592	L-Aspartic acid	Hydrogen peroxide	L-aspartate oxidase	Oxidation	RHEA	34755880
MMDBr0014593	L-Aspartic acid	Hydrogen peroxide	L-aspartate oxidase	Oxidation	RHEA	34755880
MMDBr0014596	Dihydroxyacetone phosphate	Hydrogen Ion	Quinolinate synthase	Synthesis	RHEA	34755880
MMDBr0014597	Dihydroxyacetone phosphate	Hydrogen Ion	Quinolinate synthase	Synthesis	RHEA	34755880
MMDBr0017926	Adenosine triphosphate	ADP	CTP synthase	Synthesis	RHEA	34755880
MMDBr0014672	Glyceric acid	(2R)-2-phosphoglyceric acid	Glycerate 2-kinase	Phosphorylation	RHEA	34755880
MMDBr0014706	2-trans,6-trans,10-trans-Geranylgeranyl diphosphate	diphosphate	Tritrans,polycis-undecaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific)	Synthesis	RHEA	34755880
MMDBr0014760	7,8-dihydroneopterin 3'-triphosphate	6-Carboxy-5,6,7,8-tetrahydropterin	6-carboxy-5,6,7,8-tetrahydropterin synthase	Synthesis	RHEA	34755880
MMDBr0014763	7-Deaza-7-carboxyguanine	7-Cyano-7-carbaguanine	7-cyano-7-deazaguanine synthase	Synthesis	RHEA	34755880
MMDBr0014816	2'-Deoxyinosine triphosphate	DIMP	Inosine triphosphate pyrophosphatase	Dephosphorylation	RHEA	34755880
MMDBr0014821	Oxalacetic acid	Hydrogen carbonate	Phosphoenolpyruvate carboxylase	Carboxylation	RHEA	34755880
MMDBr0014846	Thymidine 5'-triphosphate	diphosphate	dTTP/UTP pyrophosphatase	Dephosphorylation	RHEA	34755880
MMDBr0014848	Water	diphosphate	Inosine triphosphate pyrophosphatase	Dephosphorylation	RHEA	34755880
MMDBr0014891	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	(6S)-5,6,7,8-tetrahydrofolic acid	Flavin-dependent thymidylate synthase	Synthesis	RHEA	34755880
MMDBr0014908	Water	diphosphate	dTTP/UTP pyrophosphatase	Dephosphorylation	RHEA	34755880
MMDBr0014909	Water	diphosphate	Inosine triphosphate pyrophosphatase	Dephosphorylation	RHEA	34755880
MMDBr0017950	aldehydo-D-ribose 5-phosphate	Hydrogen Ion	Pyridoxal 5'-phosphate synthase subunit PDX1	Synthesis	RHEA	34755880
MMDBr0015131	Ribose 1,5-bisphosphate	D-Ribulose 1,5-bisphosphate	Ribose 1,5-bisphosphate isomerase	Isomerization	RHEA	34755880
MMDBr0015136	3-Isopropylmalate	2-Isopropylmalic acid	3-isopropylmalate dehydratase large subunit gloJ	Isomerization	RHEA	34755880
MMDBr0015325	Guanosine triphosphate	diphosphate	Molybdenum cofactor guanylyltransferase	Synthesis	RHEA	34755880
MMDBr0017960	Adenosine triphosphate	ADP	Tungstate uptake system ATP-binding protein TupC	Transport	RHEA	34755880
MMDBr0015518	D-Ribulose 1,5-bisphosphate	(2R)-3-phosphoglyceric acid	Ribulose bisphosphate carboxylase large chain	Carboxylation	RHEA	34755880
MMDBr0015543	1D-myo-inositol 3-phosphate	CMP	Archaetidylinositol phosphate synthase	Synthesis	RHEA	34755880
MMDBr0015547	Adenosine monophosphate	Adenine	AMP phosphorylase 1	Phosphorylation	RHEA	34755880
MMDBr0015548	CMP	Ribose 1,5-bisphosphate	AMP phosphorylase 1	Phosphorylation	RHEA	34755880
MMDBr0015549	Phosphate	Ribose 1,5-bisphosphate	AMP phosphorylase 1	Phosphorylation	RHEA	34755880
MMDBr0015581	dimethylallyl phosphate	Phosphate	Flavin prenyltransferase LpdB	Synthesis; Reverse C-prenylation of phenalenone	RHEA	34755880
MMDBr0015851	(2R)-2-phosphoglyceric acid	(2R)-2,3-bisphosphoglyceric acid	2-phosphoglycerate kinase	Phosphorylation	RHEA	34755880
MMDBr0015852	(2R)-2,3-bisphosphoglyceric acid	ADP	Cyclic 2,3-diphosphoglycerate synthetase	Synthesis	RHEA	34755880
MMDBr0016135	L-Isoleucine	D-allo-isoleucine	Broad substrate specificity amino-acid racemase	Epimerization; Racemization	RHEA	34755880
MMDBr0016358	2-[(2R,5Z)-2-Carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate	Carbon dioxide	Probable thiamine biosynthetic bifunctional enzyme	Synthesis	RHEA	34755880
MMDBr0016359	2-(2-Carboxy-4-methylthiazol-5-yl)ethyl phosphate	Carbon dioxide	Probable thiamine biosynthetic bifunctional enzyme	Synthesis	RHEA	34755880
MMDBr0016462	(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate	Cyclic pyranopterin monophosphate	Cyclic pyranopterin monophosphate synthase	Synthesis	RHEA	34755880
MMDBr0016807	Glycine	ADP-5-ethyl-4-methylthiazole-2-carboxylate	Thiamine thiazole synthase	Synthesis	RHEA	34755880
MMDBr0017990	Water	Deoxyadenosine	S-adenosyl-L-methionine hydrolase (adenosine-forming)	Hydrolysis of bond	RHEA	34755880
MMDBr0016907	Adenosine triphosphate	ADP	ATP synthase subunit alpha	ATP hydrolysis; Synthesis	RHEA	34755880
MMDBr0017001	L-Leucine	D-Leucine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0017020	L-Phenylalanine	D-phenylalanine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0018009	L-Tyrosine	D-Tyrosine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0018012	L-Tryptophan	D-Tryptophan	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0017101	3'-dephospho-CoA	CoA	GTP-dependent dephospho-CoA kinase	Phosphorylation	RHEA	34755880
MMDBr0017109	(R)-Pantoate	2-Dehydropantoate	2-dehydropantoate 2-reductase	Reduction	RHEA	34755880
MMDBr0017110	2-Dehydropantoate	(R)-Pantoate	2-dehydropantoate 2-reductase	Reduction	RHEA	34755880
MMDBr0017170	ADP	Adenosine monophosphate	ADP-dependent glucose/glucosamine kinase	Phosphorylation	RHEA	34755880
MMDBr0017175	beta-D-glucosaminyl-(1->4)-N-acetyl-D-glucosamine	Glucosamine	Exo-beta-D-glucosaminidase	Hydrolysis	RHEA	34755880
MMDBr0017834	(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate	D-Glyceraldehyde 3-phosphate	Tryptophan synthase	Synthesis	RHEA	34755880
MMDBr0017837	L-Serine	D-Serine	Alanine racemase	Racemization	RHEA	34755880
MMDBr0017843	Adenosine triphosphate	Adenosine monophosphate	GMP synthase [glutamine-hydrolyzing]	Synthesis	RHEA	34755880
MMDBr0017848	L-Methionine	D-methionine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0017850	L-Threonine	L-2-Amino-3-oxobutanoic acid	L-threonine 3-dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0017851	Fructose 6-phosphate	D-glucosamine 6-phosphate	Glutamine--fructose-6-phosphate aminotransferase [isomerizing]	Amine group addition	RHEA	34755880
MMDBr0017855	L-Threonine	D-Threonine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0017867	5-Phosphoribosylamine	Phosphoribosyl pyrophosphate	Amidophosphoribosyltransferase	Transfer of a ribosyl group	RHEA	34755880
MMDBr0017874	Water	L-Glutamic acid	Thermolabile glutaminase	Synthesis	RHEA	34755880
MMDBr0017876	Adenosine triphosphate	ADP	Glutamine synthetase	Synthesis	RHEA	34755880
MMDBr0017879	Adenosine triphosphate	2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine	Phosphoribosylformylglycinamidine synthase	Synthesis	RHEA	34755880
MMDBr0017896	Water	L-Aspartic acid	Putative L-asparaginase	Hydrolysis	RHEA	34755880
MMDBr0017897	Adenosine triphosphate	diphosphate	S-adenosylmethionine synthase	Synthesis	RHEA	34755880
MMDBr0024345	Adenosine triphosphate	Hydrogen Ion	Tyrosine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024360	Adenosine triphosphate	diphosphate	Valine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024368	Adenosine triphosphate	diphosphate	Isoleucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024371	Adenosine triphosphate	Hydrogen Ion	Asparagine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024389	Adenosine triphosphate	diphosphate	Leucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024391	alpha-Ketoisovaleric acid	Hydrogen Ion	Ketoisovalerate oxidoreductase subunit VorC	Redox reaction	RHEA	34755880
MMDBr0024411	Adenosine triphosphate	Hydrogen Ion	Type-2 serine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024418	Adenosine triphosphate	diphosphate	Alanine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024421	Indolepyruvate	Hydrogen Ion	Indolepyruvate oxidoreductase subunit IorA	Redox reaction	RHEA	34755880
MMDBr0024424	S-Adenosylmethionine	S-Adenosylhomocysteine	Protein-L-isoaspartate O-methyltransferase	Methylation	RHEA	34755880
MMDBr0024429	Pyruvic acid	Hydrogen Ion	Pyruvate synthase subunit PorB	Redox reaction; Synthesis	RHEA	34755880
MMDBr0024449	Adenosine triphosphate	diphosphate	Methionine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024454	D-Galactose	Hydrogen Ion	Galactokinase	Phosphorylation	RHEA	34755880
MMDBr0024474	Adenosine triphosphate	diphosphate	Proline--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024477	Adenosine triphosphate	diphosphate	CCA-adding enzyme	Synthesis and repair of 3'-terminal CCA sequence of tRNA	RHEA	34755880
MMDBr0024509	Adenosine triphosphate	Hydrogen Ion	Polyribonucleotide 5'-hydroxyl-kinase PH0197	Ligation; Phosphorylation	RHEA	34755880
MMDBr0024522	Adenosine triphosphate	diphosphate	Glycine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024532	Water	Hydrogen Ion	Tungsten-containing aldehyde ferredoxin oxidoreductase	Redox reaction	RHEA	34755880
MMDBr0024533	Water	Ammonium	Probable chemoreceptor glutamine deamidase CheD	Deamidation	RHEA	34755880
MMDBr0024548	(6S)-5,6,7,8-tetrahydrofolic acid	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	Probable aminomethyltransferase	Methylation	RHEA	34755880
MMDBr0024559	Adenosine triphosphate	Hydrogen Ion	Histidine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024568	Water	Hydrogen Ion	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Amide group addition	RHEA	34755880
MMDBr0024578	Adenosine triphosphate	diphosphate	Cysteine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024590	Adenosine triphosphate	ADP	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0024628	Adenosine triphosphate	Hydrogen Ion	Phenylalanine--tRNA ligase beta subunit	Ligation	RHEA	34755880
MMDBr0024632	L-Aspartic acid	diphosphate	Aspartate--tRNA(Asp) ligase	Ligation	RHEA	34755880
MMDBr0024656	Adenosine triphosphate	diphosphate	Arginine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024666	Adenosine triphosphate	diphosphate	Lysine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024672	S-Adenosylmethionine	Hydrogen Ion	tRNA (cytosine(72)-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0024673	S-Adenosylmethionine	Hydrogen Ion	tRNA (cytosine(72)-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0024745	L-Glutamic acid	diphosphate	Glutamate--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024759	Adenosine triphosphate	diphosphate	RNA 3'-terminal phosphate cyclase	Cycle formation	RHEA	34755880
MMDBr0024763	Adenosine triphosphate	Hydrogen Ion	Tryptophan--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024774	Hydrogen Ion	Carbon dioxide	Probable glycine dehydrogenase (decarboxylating) subunit 1	Dehydrogenation	RHEA	34755880
MMDBr0024787	Adenosine triphosphate	Hydrogen Ion	Threonine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024905	Spermidine	1,3-Diaminopropane	Probable deoxyhypusine synthase	Synthesis	RHEA	34755880
MMDBr0024954	Pyruvic acid	Water	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	Synthesis	RHEA	34755880
MMDBr0024955	S-Adenosylmethionine	Hydrogen Ion	tRNA(Phe) (4-demethylwyosine(37)-C(7)) aminocarboxypropyltransferase	Synthesis	RHEA	34755880
MMDBr0024956	S-Adenosylmethionine	Hydrogen Ion	Diphthine synthase	Synthesis	RHEA	34755880
MMDBr0024962	S-Adenosylmethionine	Hydrogen Ion	tRNA(Phe) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-methyltransferase	Methylation	RHEA	34755880
MMDBr0024965	L-Histidine	Hydrogen Ion	2-(3-amino-3-carboxypropyl)histidine synthase	Synthesis	RHEA	34755880
MMDBr0024971	L-Threonylcarbamoyladenylate	Hydrogen Ion	tRNA N6-adenosine threonylcarbamoyltransferase	Synthesis	RHEA	34755880
MMDBr0024976	S-Adenosylmethionine	Hydrogen Ion	Probable threonylcarbamoyladenosine tRNA methylthiotransferase	Methylthiolation	RHEA	34755880
MMDBr0025030	Adenosine triphosphate	ADP	Putative [LysW]-aminoadipate/[LysW]-glutamate kinase	Phosphorylation	RHEA	34755880
MMDBr0025031	Phosphate	Hydrogen Ion	Putative [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate reductase	Reduction	RHEA	34755880
MMDBr0025032	alpha-Ketoglutarate	L-Glutamic acid	Putative [LysW]-aminoadipate semialdehyde/glutamate semialdehyde transaminase	Transfer of amino group	RHEA	34755880
MMDBr0025060	Adenosine triphosphate	Hydrogen Ion	Type-2 serine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0025063	S-Adenosylmethionine	Hydrogen Ion	23S rRNA (uracil(747)-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025072	S-Adenosylmethionine	Hydrogen Ion	tRNA (uracil(54)-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025114	S-Adenosylmethionine	Hydrogen Ion	tRNA (cytidine(56)-2'-O)-methyltransferase	Methylation	RHEA	34755880
MMDBr0025124	S-Adenosylmethionine	Hydrogen Ion	tRNA (guanine(26)-N(2))-dimethyltransferase	Methylation	RHEA	34755880
MMDBr0025130	7-Cyano-7-carbaguanine	Guanine	tRNA-guanine(15) transglycosylase	Glycosidic bond hydrolysis	RHEA	34755880
MMDBr0025151	Water	Hydrogen Ion	tRNA(Ile2) 2-agmatinylcytidine synthetase TiaS	Synthesis	RHEA	34755880
MMDBr0025154	Water	Niacinamide	NAD-dependent protein deacetylase	Deacetylation	RHEA	34755880
MMDBr0025193	Adenosine triphosphate	ADP	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0025242	S-Adenosylmethionine	Hydrogen Ion	Ribosomal RNA small subunit methyltransferase Nep1	Methylation	RHEA	34755880
MMDBr0025266	D-Glucose	Hydrogen Ion	Trehalose synthase	Synthesis	RHEA	34755880
MMDBr0025273	Water	Niacinamide	NAD-dependent protein deacylase	Deacylation	RHEA	34755880
MMDBr0025326	Guanosine triphosphate	Hydrogen Ion	Probable GTP 3',8-cyclase	Cycle formation	RHEA	34755880
MMDBr0025423	Adenosine triphosphate	ADP	Putative [LysW]-aminoadipate/[LysW]-glutamate kinase	Phosphorylation	RHEA	34755880
MMDBr0025425	Phosphate	Hydrogen Ion	Putative [LysW]-L-2-aminoadipate/[LysW]-L-glutamate phosphate reductase	Reduction	RHEA	34755880
MMDBr0025426	alpha-Ketoglutarate	L-Glutamic acid	Putative [LysW]-aminoadipate semialdehyde/glutamate semialdehyde transaminase	Transfer of amino group	RHEA	34755880
MMDBr0025508	Adenosine triphosphate	Hydrogen Ion	Polyribonucleotide 5'-hydroxyl-kinase PH0197	Phosphorylation	RHEA	34755880
MMDBr0025562	Hydrogen sulfide	diphosphate	tRNA-5-methyluridine(54) 2-sulfurtransferase	Sulfuration	RHEA	34755880
MMDBr0025563	S-Adenosylmethionine	Hydrogen Ion	tRNA (pseudouridine(54)-N(1))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025743	S-Adenosylmethionine	Hydrogen Ion	tRNA (cytosine(72)-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025744	S-Adenosylmethionine	Hydrogen Ion	tRNA (cytosine(72)-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025768	S-Adenosylmethionine	Hydrogen Ion	tRNA (cytosine(72)-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025769	S-Adenosylmethionine	Hydrogen Ion	tRNA (cytosine(72)-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025786	L-Cysteine	Water	Peroxiredoxin	Oxidation	RHEA	34755880
MMDBr0025844	2,3-bis-O-(phytanyl)-sn-glycerol 1-phosphate	2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate	Digeranylgeranylglycerophospholipid reductase	Reduction	RHEA	34755880
MMDBr0025845	2,3-bis-O-(geranylgeranyl)-sn-glycerol 1-phosphate	2,3-bis-O-(phytanyl)-sn-glycerol 1-phosphate	Digeranylgeranylglycerophospholipid reductase	Reduction	RHEA	34755880
MMDBr0026046	Uridine 5'-diphosphate	Uridine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026047	Uridine 5'-diphosphate	Cytidine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026048	Guanosine 3',5'-bis(diphosphate)	Guanosine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026061	Cytidine triphosphate	Uridine 5'-diphosphate	Nucleoside-triphosphatase THEP1	Dephosphorylation	RHEA	34755880
MMDBr0026062	Uridine triphosphate	Uridine 5'-diphosphate	Nucleoside-triphosphatase THEP1	Dephosphorylation	RHEA	34755880
MMDBr0026063	Adenosine triphosphate	Adenosine diphosphate	Nucleoside-triphosphatase THEP1	Dephosphorylation	RHEA	34755880
MMDBr0026064	Guanosine triphosphate	Guanosine 3',5'-bis(diphosphate)	Nucleoside-triphosphatase THEP1	Dephosphorylation	RHEA	34755880
MMDBr0026085	Deoxyuridine-5'-diphosphate	Deoxyuridine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026086	2'-Deoxycytidine 5'-diphosphate	Deoxycytidine 5'-triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026087	2'-Deoxyadenosine 5'-diphosphate	Deoxyadenosine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026088	2'-Deoxyguanosine 5'-diphosphate	2'-Deoxyguanosine 5'-triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026105	CDPglucose	Uridine 5'-diphosphate	Trehalose synthase	Synthesis	RHEA	34755880
MMDBr0026106	ADP-alpha-D-glucose	Adenosine diphosphate	Trehalose synthase	Synthesis	RHEA	34755880
MMDBr0026107	GDP-alpha-D-glucose	Guanosine 3',5'-bis(diphosphate)	Trehalose synthase	Synthesis	RHEA	34755880
MMDBr0026108	UDP-alpha-D-glucose	Uridine 5'-diphosphate	Trehalose synthase	Synthesis	RHEA	34755880
MMDBr0026126	L-Alanine	D-Alanine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026127	L-Lysine	D-Lysine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026128	L-Serine	D-Serine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026129	L-Proline	D-Proline	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026130	L-Cysteine	D-Cysteine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026131	L-Glutamine	D-Glutamine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026132	L-Aspartic acid	D-Aspartic acid	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026133	L-Methionine	D-methionine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026134	L-Valine	D-Valine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026135	L-Phenylalanine	D-phenylalanine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026136	L-Tryptophan	D-Tryptophan	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026137	L-Leucine	D-Leucine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026138	L-Tyrosine	D-Tyrosine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880

Genome Data

Genome Link

Not Available

Genome Length

Not Available

# Predicted Proteins

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

Reference

PMID: 17704766

Source Links

GenBank