| MMDBm0001200 | Agrobacterium tumefaciens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001209 | Vibrio fischeri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001231 | Aquifex aeolicus | Eubacteria | Aquificae | Aerobe |
| MMDBm0001409 | Caulobacter crescentus | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002439 | Rhodobacter sphaeroides | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002441 | Rhodobacter sphaeroides | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0456231 | Rhodobacter sphaeroides | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0001980 | Chromobacterium violaceum | Eubacteria | Proteobacteria | Facultatively anaerobe |
| MMDBm0001479 | psychrerythraea | Eubacteria | Proteobacteria | Facultatively anaerobe |
| MMDBm0542442 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000162 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0541555 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001659 | Haemophilus influenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0001658 | Haemophilus influenzae | Eubacteria | Proteobacteria | Aerobe; facultative anaerobe |
| MMDBm0544420 | Klebsiella aerogenes | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001284 | succiniciproducens | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0001928 | Neisseria gonorrhoeae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001930 | Neisseria meningitidis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001949 | Nitrosospira multiformis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001942 | Nitrosococcus oceani | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002345 | Pasteurella multocida | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002346 | Pectobacterium atrosepticum | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0002361 | Photorhabdus luminescens | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002360 | Photobacterium profundum | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002395 | Pseudomonas syringae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002393 | Pseudomonas fluorescens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002397 | Pseudomonas fluorescens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002392 | Pseudomonas putida | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000334 | Pseudomonas putida | Eubacteria | Proteobacteria | Facultative |
| MMDBm0002394 | Pseudomonas syringae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000636 | Pseudomonas savastanoi | Eubacteria | Proteobacteria | |
| MMDBm0002396 | Pseudomonas syringae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002415 | Psychrobacter arcticus | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001810 | Mesorhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000411 | Rhodobacter capsulatus | Eubacteria | Proteobacteria | |
| MMDBm0002456 | Rhodospirillum rubrum | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002440 | Rhodobacter sphaeroides | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0002442 | Rhodobacter sphaeroides | Eubacteria | Proteobacteria | Aerobe; anaerobe |
| MMDBm0548594 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0550379 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0550758 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002492 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002533 | Shigella boydii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002532 | Shigella dysenteriae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000368 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002531 | Shigella sonnei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002663 | Synechococcus elongatus | Eubacteria | Cyanobacteria | Facultative |
| MMDBm0002719 | Thiobacillus denitrificans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002739 | Vibrio cholerae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002741 | Vibrio parahaemolyticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002740 | Vibrio vulnificus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002742 | Vibrio vulnificus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002763 | Xanthomonas campestris | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002761 | Xanthomonas campestris | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002771 | Xylella fastidiosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002772 | Xylella fastidiosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0562461 | Yersinia pestis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002778 | pseudotuberculosis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002391 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001504 | Ralstonia eutropha | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001504 | Ralstonia eutropha | Eubacteria | Proteobacteria | Facultative aerobe |
| MMDBm0001952 | Aeropyrum pernix | Archaea | Crenarchaeota | Aerobe |
| MMDBm0001953 | Archaeoglobus fulgidus | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001681 | Halorubrum lacusprofundi | Archaea | Euryarchaeota | Aerobe |
| MMDBm0001669 | Haloarcula marismortui | Archaea | Euryarchaeota | Aerobe |
| MMDBm0001672 | Halobacterium salinarum | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001671 | Halobacterium salinarum | Archaea | Euryarchaeota | Aerobe |
| MMDBm0001843 | Methanosarcina acetivorans | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001824 | Methanococcoides burtonii | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001848 | Methanospirillum hungatei | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001838 | Methanopyrus kandleri | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001844 | Methanosarcina mazei | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001834 | marisnigri | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0000218 | Methanobrevibacter smithii | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0001813 | Metallosphaera sedula | Archaea | Crenarchaeota | Aerobe |
| MMDBm0001849 | Methanothermobacter thermautotrophicus | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001840 | Methanosaeta thermophila | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001926 | Natronomonas pharaonis | Archaea | Euryarchaeota | Aerobe |
| MMDBm0001948 | Nitrosopumilus maritimus | Archaea | Thaumarchaeota | Aerobe |
| MMDBm0001955 | Picrophilus torridus | Archaea | Euryarchaeota | Aerobe |
| MMDBm0002423 | Pyrococcus abyssi | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0001954 | Pyrobaculum aerophilum | Archaea | Crenarchaeota | Aerobe; anaerobe |
| MMDBm0002425 | Pyrococcus furiosus | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0002424 | Pyrococcus horikoshii | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0002420 | Pyrobaculum islandicum | Archaea | Crenarchaeota | Anaerobe |
| MMDBm0002703 | Thermoproteus neutrophilus | Archaea | Crenarchaeota | Anaerobe |
| MMDBm0002577 | Staphylothermus marinus | Archaea | Crenarchaeota | Anaerobic |
| MMDBm0002643 | Sulfolobus acidocaldarius | Archaea | Crenarchaeota | Aerobe |
| MMDBm0002642 | Sulfolobus tokodaii | Archaea | Crenarchaeota | Aerobe |
| MMDBm0002701 | Thermoplasma acidophilum | Archaea | Euryarchaeota | Facultative anaerobe |
| MMDBm0002690 | Thermococcus kodakarensis | Archaea | Euryarchaeota | Anaerobe |
| MMDBm0002693 | Thermococcus sibiricus | Archaea | Euryarchaeota | Anaerobic |
| MMDBm0002702 | Thermoplasma volcanium | Archaea | Euryarchaeota | Facultative anaerobe |
| MMDBm0002641 | Sulfolobus solfataricus | Not Available | Crenarchaeota | Aerobe |
| MMDBm0002641 | Sulfolobus solfataricus | Not Available | Crenarchaeota | Aerobe |