MiMeDB: Pseudomonas putida (MMDBm0000334)

Microbe Identification

Microbe name

Pseudomonas putida

NCBI Taxonomy ID

303

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Proteobacteria

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Species

putida

Strain

Not Available

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Yes

Flagellar presence

Yes

Number of membranes

Oxygen preference

Facultative

Optimal temperature

Not Available

Temperature range

Mesophilic

Habitat

Soil - Wastewater

Biotic relationship

Free living

Cell arrangement

Singles

Sporulation

Singles

Metabolism

Manganese oxidizer

Energy source

Heterotroph

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Lower respiratory tract			BacDive	34718743
Human	Bronchi			BacDive	34718743

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference
Human	Cystic fibrosis			BacDive
Human	Cystic fibrosis			BacDive

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012850	3,4-dihydroxybenzoic acid	3-carboxy-cis,cis-muconic acid	Protocatechuate 3,4-dioxygenase alpha chain	Oxygenation	RHEA	34755880
MMDBr0012963	salicylate	Pyrocatechol	Salicylate hydroxylase	Hydroxylation	RHEA	34755880
MMDBr0012969	(R)-(2-chloro-5-oxo-2,5-dihydro-2-furyl)acetate	3-chloro-cis,cis-muconic acid	Chloromuconate cycloisomerase CbnB	Isomerization	RHEA	34755880
MMDBr0013007	6-Hydroxymethyl dihydropterin	6-Hydroxymethyl-dihydropterin pyrophosphate	Folic acid synthesis protein fol1	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0013021	(1R,6S)-1,6-dihydroxycyclohexa-2,4-diene-1-carboxylic acid	Pyrocatechol	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013038	N-(5-Phospho-D-ribosyl)anthranilate	Phosphoribosyl pyrophosphate	Tryptophan biosynthesis protein TrpCD	Transfer of a ribosyl group	RHEA	34755880
MMDBr0013049	(1R,2S)-1,2-dihydronaphthalene-1,2-diol	Naphthalene-1,2-diol	1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013050	Benzaldehyde	Benzoic acid	Benzaldehyde dehydrogenase YfmT	Dehydrogenation	RHEA	34755880
MMDBr0013073	3-oxoadipate	3-Oxoadipyl-CoA	3-oxoadipate CoA-transferase subunit A	Transfer of CoA moiety	RHEA	34755880
MMDBr0013109	(S)-muconolactone	(4,5-dihydro-5-oxofuran-2-yl)-acetic acid	Muconolactone Delta-isomerase	Isomerization	RHEA	34755880
MMDBr0013111	2-(5-oxo-2,5-dihydrofuran-2-ylidene)acetic acid	4-Oxohex-2-enedioate	Carboxymethylenebutenolidase	Carboxylic ester bond hydrolysis	RHEA	34755880
MMDBr0013113	beta-nicotinamide D-ribonucleotide	nicotinate beta-D-ribonucleotide	Nicotinamide-nucleotide amidohydrolase PncC	Hydrolysis of bond	RHEA	34755880
MMDBr0013126	L-Pipecolic acid	1-Piperideine-2-carboxylic acid	Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase	Reduction	RHEA	34755880
MMDBr0013130	6-Phosphonoglucono-D-lactone	6-Phosphogluconic acid	6-phosphogluconolactonase	Hydrolysis	RHEA	34755880
MMDBr0013173	Uridine 5'-monophosphate	Phosphoribosyl pyrophosphate	Bifunctional protein PyrR	Transfer of phosphoribosyl group	RHEA	34755880
MMDBr0013186	4-Imidazolone-5-propionic acid	Trans-urocanate	Urocanate hydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0013208	Tartaric acid	Glyceric acid	Probable tartrate dehydrogenase/decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0013249	Glycerol	Dihydroxyacetone	Long-chain-alcohol dehydrogenase 1	Dehydrogenation	RHEA	34755880
MMDBr0013252	Benzene	cis-1,2-dihydrobenzene-1,2-diol	Benzene 1,2-dioxygenase subunit alpha	Oxygenation	RHEA	34755880
MMDBr0013266	(S)-mandelate	(R)-mandelate	Mandelate racemase	Racemization	RHEA	34755880
MMDBr0013283	Malonic semialdehyde	beta-Alanine	Omega-aminotransferase	Amine group addition	RHEA	34755880
MMDBr0013301	Morphine	morphinone	Morphine 6-dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013302	Morphine	morphinone	Morphine 6-dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013309	Phosphoglycolic acid	Glycolic acid	Phosphoglycolate phosphatase	Dephosphorylation	RHEA	34755880
MMDBr0013320	L-Homocysteine	2-oxobutanoic acid	Cystathionine gamma-lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0013321	Creatinine	Creatine	Creatinine amidohydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0013325	(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoic acid	2-oxopent-4-enoic acid	2-hydroxymuconate semialdehyde hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0013327	D-glucarate	5-Dehydro-4-deoxy-D-glucarate	Glucarate dehydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0013330	Taurine	Taurine	Taurine import ATP-binding protein TauB	Transport	RHEA	34755880
MMDBr0013390	3'-dephospho-CoA	2'-(5''-triphospho-alpha-D-ribosyl)-3'-dephospho-CoA	Probable 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase	Synthesis	RHEA	34755880
MMDBr0013393	p-Cresol	4-Hydroxybenzaldehyde	4-cresol dehydrogenase [hydroxylating] flavoprotein subunit	Dehydrogenation	RHEA	34755880
MMDBr0013402	Tartaric acid	2-Hydroxy-3-oxosuccinate	Probable tartrate dehydrogenase/decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0013426	Homogentisic acid	Maleylacetoacetic acid	Homogentisate 1,2-dioxygenase	Oxygenation	RHEA	34755880
MMDBr0013428	cis-1,2-dihydrobenzene-1,2-diol	Pyrocatechol	Cis-1,2-dihydrobenzene-1,2-diol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013499	Dihydrouracil	3-(carbamoylamino)propanoic acid	Dihydropyrimidinase	Hydrolysis	RHEA	34755880
MMDBr0013528	Formaldehyde	formate	Glutathione-independent formaldehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013532	(2R,3S)-tartrate	2-Hydroxy-3-oxosuccinate	Probable tartrate dehydrogenase/decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0013536	Chorismate	4-Hydroxybenzoic acid	Chorismate pyruvate-lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0013558	Toluene	(1S,2R)-3-methylcyclohexa-3,5-diene-1,2-diol	Benzene 1,2-dioxygenase subunit alpha	Oxygenation	RHEA	34755880
MMDBr0013559	Phosphonoacetate	Acetic acid	Phosphonoacetate hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0013588	1-aminocyclopropane-1-carboxylic acid	2-oxobutanoic acid	1-aminocyclopropane-1-carboxylate deaminase	Deamination	RHEA	34755880
MMDBr0013605	Ciliatine	L-Alanine	2-aminoethylphosphonate--pyruvate transaminase	Hydrolysis of bond	RHEA	34755880
MMDBr0013609	(2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diol	biphenyl-2,3-diol	Cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013616	2-Keto-3-deoxy-6-phosphogluconic acid	D-Glyceraldehyde 3-phosphate	2-dehydro-3-deoxy-phosphogluconate aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0013624	2,6-dioxo-6-phenylhexa-3-enoic acid	2-oxopent-4-enoic acid	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0013644	Pyrocatechol	(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoic acid	Catechol-2,3-dioxygenase	Oxygenative ring cleavage	RHEA	34755880
MMDBr0013661	phthalate	cis-4,5-dihydroxycyclohexa-2,6-diene-1,2-dicarboxylic acid	Phthalate 4,5-dioxygenase oxygenase reductase subunit	Oxygenation	RHEA	34755880
MMDBr0013705	3-hydroxy-1H-quinolin-4-one	Carbon monoxide	1H-3-hydroxy-4-oxoquinoline 2,4-dioxygenase	Oxygenation	RHEA	34755880
MMDBr0013721	L-Arginine	D-Arginine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0013736	N-cyclohexylformamide	cyclohexyl isocyanide	Isonitrile hydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0013780	Salicylaldehyde	salicylate	Salicylaldehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013801	Phosphoenolpyruvic acid	UDP-N-Acetyl-3-(1-carboxyvinyl)-D-glucosamine	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	Synthesis	RHEA	34755880
MMDBr0013815	tartrate	2-Hydroxy-3-oxosuccinate	Probable tartrate dehydrogenase/decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0013820	Phosphonoacetaldehyde	Acetaldehyde	Phosphonoacetaldehyde hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0013835	S-Lactoylglutathione	Glutathione	Lactoylglutathione lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0013845	naphthalene	(1R,2S)-1,2-dihydronaphthalene-1,2-diol	Naphthalene 1,2-dioxygenase system, large oxygenase component	Oxygenation	RHEA	34755880
MMDBr0013849	Formaldehyde	formate	Glutathione-independent formaldehyde dehydrogenase	Dehydrogenation; Dismutation	RHEA	34755880
MMDBr0013856	Octane	1-Octanol	Alkane 1-monooxygenase	Oxygenation	RHEA	34755880
MMDBr0013882	Succinyl-CoA	3-Oxoadipyl-CoA	Beta-ketoadipyl-CoA thiolase	Carbon‚Äìcarbon-bond formation	RHEA	34755880
MMDBr0013886	Carbamoylphosphate	Citrulline	Ornithine carbamoyltransferase	Transfer of a carbamoyl group	RHEA	34755880
MMDBr0013901	L-Arginine	Citrulline	Arginine deiminase	Hydrolysis of l-arginine to citrulline and ammonium ion	RHEA	34755880
MMDBr0013946	Carbamoylphosphate	N-carbamoyl-L-aspartate	Protein pyrABCN	Transfer of a carbamoyl group	RHEA	34755880
MMDBr0013970	L-Alanine	D-Alanine	L-alanine/L-glutamate racemase	Racemization	RHEA	34755880
MMDBr0014021	superoxide	Hydrogen peroxide	Methanobactin mb-OB3b	Dismutation	RHEA	34755880
MMDBr0014055	2-phenylacetic acid	Phenylacetyl-CoA	Phenylacetate-coenzyme A ligase	Ligation	RHEA	34755880
MMDBr0014056	2-phenylacetic acid	Phenylacetyl-CoA	Phenylacetate-coenzyme A ligase	Ligation	RHEA	34755880
MMDBr0014122	FMNH2	Flavin mononucleotide	NAD(P)H-dependent FMN reductase atnL	Reduction	RHEA	34755880
MMDBr0014124	FMNH2	Flavin mononucleotide	NAD(P)H-dependent FMN reductase atnL	Redox reaction; Reduction	RHEA	34755880
MMDBr0014131	Benzaldehyde	Benzoic acid	NAD(P)-dependent benzaldehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014141	(S)-3-Hydroxybutanoyl-CoA	(3R)-3-hydroxybutanoyl-CoA	Fatty acid oxidation complex subunit alpha	Aerobic and anaerobic degradation of long-chain fatty acids	RHEA	34755880
MMDBr0014143	N-Methylalanine	Methylamine	Delta(1)-pyrroline-2-carboxylate/Delta(1)-piperideine-2-carboxylate reductase	Reduction	RHEA	34755880
MMDBr0014213	Creatine	Sarcosine	Creatinase	Hydrolysis	RHEA	34755880
MMDBr0014220	(S)-4-hydroxy-2-oxopentanoic acid	(2Z)-2-hydroxypenta-2,4-dienoate	2-oxopent-4-enoate hydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0014227	(S)-4-hydroxy-2-oxopentanoic acid	Acetaldehyde	4-hydroxy-2-oxovalerate aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0014258	L-Lysine	D-Lysine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0014262	(R)-mandelamide	(R)-mandelate	Mandelamide hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0014318	atropine	Tropic acid	Tropinesterase	Hydrolysis of an ester group	RHEA	34755880
MMDBr0014319	(R)-2-(carboxymethyl)-5-oxo-2,5-dihydro-2-furoic acid	(4,5-dihydro-5-oxofuran-2-yl)-acetic acid	4-carboxymuconolactone decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0014322	phenylglyoxylate	Benzaldehyde	Benzoylformate decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0014340	1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate	(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate	Indole-3-glycerol phosphate synthase	Synthesis	RHEA	34755880
MMDBr0014364	2-(carboxymethyl)-5-oxo-2,5-dihydro-2-furoic acid	3-carboxy-cis,cis-muconic acid	3-carboxy-cis,cis-muconate cycloisomerase	Isomerization	RHEA	34755880
MMDBr0014365	4-Imidazolone-5-propionic acid	Formiminoglutamic acid	Imidazolonepropionase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0014380	(2R,3S)-2,3-dihydroxy-2,3-dihydro-p-cumic acid	2,3-dihydroxy-p-cumic acid	2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014387	3-(2,3-Dihydroxyphenyl)propanoate	2-Hydroxy-6-ketononadienedicarboxylate	2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase	Oxygenation	RHEA	34755880
MMDBr0014419	4,5-dihydroxyphthalate	3,4-dihydroxybenzoic acid	4,5-dihydroxyphthalate decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0014420	cis-1,2-dihydroxy-1,2-dihydrodibenzothiophene	1,2-dihydroxydibenzothiophene	1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014433	(3E)-2-oxohex-3-enedioate	2-oxopent-4-enoic acid	4-oxalocrotonate decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0014436	L-Glutamic acid	N-Acetylglutamic acid	Amino-acid acetyltransferase	Acetylation; Synthesis	RHEA	34755880
MMDBr0014466	5-Dehydro-4-deoxy-D-glucarate	2,5-Dioxopentanoate	Probable 5-dehydro-4-deoxyglucarate dehydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0014509	(2E)-3-(2,3-dihydroxyphenyl)prop-2-enoic acid	delta7-Avenasterol	2,3-dihydroxyphenylpropionate/2,3-dihydroxicinnamic acid 1,2-dioxygenase	Oxygenation	RHEA	34755880
MMDBr0014666	Naphthalene-1,2-diol	2-hydroxychromene-2-carboxylic acid	1,2-dihydroxynaphthalene dioxygenase	Oxygenation	RHEA	34755880
MMDBr0014675	(3E)-4-(2-hydroxyphenyl)-2-oxobut-3-enoic acid	Salicylaldehyde	Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0014677	2-hydroxychromene-2-carboxylic acid	(3E)-4-(2-hydroxyphenyl)-2-oxobut-3-enoic acid	2-hydroxychromene-2-carboxylate isomerase	Isomerization	RHEA	34755880
MMDBr0014763	7-Deaza-7-carboxyguanine	7-Cyano-7-carbaguanine	7-cyano-7-deazaguanine synthase	Synthesis	RHEA	34755880
MMDBr0014776	Farnesyl pyrophosphate	Fe(II)-heme o	Protoheme IX farnesyltransferase, mitochondrial	Farnesylation	RHEA	34755880
MMDBr0014950	(S)-muconolactone	cis,cis-Muconic acid	Muconate cycloisomerase 1	Isomerization	RHEA	34755880
MMDBr0014986	Paraxanthine	7-Methylxanthine	Methylxanthine N1-demethylase NdmA	Demethylation	RHEA	34755880
MMDBr0014987	Theobromine	7-Methylxanthine	Methylxanthine N3-demethylase NdmB	Demethylation	RHEA	34755880
MMDBr0014992	3-Methylxanthine	Formaldehyde	Methylxanthine N3-demethylase NdmB	Demethylation	RHEA	34755880
MMDBr0015165	3,7-Dimethyl-1,6-octadien-3-ol	(6E)-8-oxolinalool	Linalool 8-monooxygenase	Oxygenation	RHEA	34755880
MMDBr0015179	(1R,4R,5R)-5-hydroxycamphor	(1R,4R)-bornane-2,5-dione	5-exo-hydroxycamphor dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0015187	[(1R)-2,2,3-trimethyl-5-oxocyclopent-3-enyl]acetyl-CoA	[(2R)-3,3,4-trimethyl-6-oxo-3,6-dihydro-1H-pyran-2-yl]acetyl-CoA	2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase	Oxygenation	RHEA	34755880
MMDBr0015220	(2Z,4E)-2-hydroxyhexa-2,4-dienedioic acid	(3E)-2-oxohex-3-enedioate	2-hydroxymuconate tautomerase	Ketonization	RHEA	34755880
MMDBr0015284	4-(6-hydroxypyridin-3-yl)-4-oxobutanoic acid	2,5-dihydroxypyridine	6-hydroxy-3-succinoylpyridine 3-monooxygenase HspA	Oxygenation	RHEA	34755880
MMDBr0015318	2-Hydroxy-6-ketononadienedicarboxylate	(2Z)-2-hydroxypenta-2,4-dienoate	2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0015319	delta7-Avenasterol	(2Z)-2-hydroxypenta-2,4-dienoate	2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0015322	(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoic acid	(2Z,4E)-2-hydroxyhexa-2,4-dienedioic acid	2-hydroxymuconic semialdehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0015325	Guanosine triphosphate	Mo-molybdopterin guanine dinucleotide	Molybdenum cofactor guanylyltransferase	Synthesis	RHEA	34755880
MMDBr0015342	(1R,4R)-bornane-2,5-dione	(1R,4R)-5-oxo-1,2-campholide	2,5-diketocamphane 1,2-monooxygenase 1	Oxygenation	RHEA	34755880
MMDBr0015385	L-Arginine	L-Arginine	Putative arginine/ornithine antiporter	Transport	RHEA	34755880
MMDBr0015386	L-Arginine	L-Arginine	Putative arginine/ornithine antiporter	Transport	RHEA	34755880
MMDBr0015482	Caffeine	Formaldehyde	Methylxanthine N1-demethylase NdmA	Demethylation	RHEA	34755880
MMDBr0015483	Caffeine	Formaldehyde	Methylxanthine N1-demethylase NdmA	Demethylation	RHEA	34755880
MMDBr0015484	Theophylline	3-Methylxanthine	Methylxanthine N1-demethylase NdmA	Demethylation	RHEA	34755880
MMDBr0015485	Theophylline	3-Methylxanthine	Methylxanthine N1-demethylase NdmA	Demethylation	RHEA	34755880
MMDBr0015486	Paraxanthine	7-Methylxanthine	Methylxanthine N1-demethylase NdmA	Demethylation	RHEA	34755880
MMDBr0015487	Theobromine	7-Methylxanthine	Methylxanthine N3-demethylase NdmB	Demethylation	RHEA	34755880
MMDBr0015488	3-Methylxanthine	Formaldehyde	Methylxanthine N3-demethylase NdmB	Demethylation	RHEA	34755880
MMDBr0015774	Indoleacetic acid	2-hydroxy-(1H-indol-3-yl)acetic acid	Indole-3-acetate monooxygenase	Oxygenation	RHEA	34755880
MMDBr0015775	Indoleacetic acid	2-hydroxy-(1H-indol-3-yl)acetic acid	Indole-3-acetate monooxygenase	Oxygenation	RHEA	34755880
MMDBr0015843	p-cumate	(2R,3S)-2,3-dihydroxy-2,3-dihydro-p-cumic acid	p-cumate 2,3-dioxygenase system, large oxygenase component	Oxygenation	RHEA	34755880
MMDBr0016081	Cr(6+)	Cr(3+)	Quinone reductase	Reduction	RHEA	34755880
MMDBr0016082	Cr(6+)	Cr(3+)	Quinone reductase	Reduction	RHEA	34755880
MMDBr0016335	2-ethylhexyl sulfate	2-ethylhexanal	Alpha-ketoglutarate-dependent sulfate ester dioxygenase	Oxygenation	RHEA	34755880
MMDBr0016360	6-sulfo-D-quinovose	6-deoxy-6-sulfo-D-glucono-1,5-lactone	Sulfoquinovose 1-dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0016361	6-deoxy-6-sulfo-D-glucono-1,5-lactone	6-deoxy-6-sulfo-D-gluconic acid	6-deoxy-6-sulfogluconolactonase	Hydrolysis	RHEA	34755880
MMDBr0016362	6-deoxy-6-sulfo-D-gluconic acid	2-dehydro-3,6-dideoxy-6-sulfo-D-gluconic acid	6-deoxy-6-sulfo-D-gluconate dehydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0016363	2-dehydro-3,6-dideoxy-6-sulfo-D-gluconic acid	(2S)-3-sulfolactaldehyde	2-dehydro-3,6-dideoxy-6-sulfogluconate aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0016364	(2S)-3-sulfolactaldehyde	(S)-3-Sulfonatolactate	3-sulfolactaldehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0016365	(2S)-3-sulfolactaldehyde	(2R)-3-sulfolactic acid	3-sulfolactaldehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0016366	4-Hydroxybenzaldehyde	4-Hydroxybenzoic acid	4-hydroxybenzaldehyde dehydrogenase (NADP(+))	Dehydrogenation	RHEA	34755880
MMDBr0016394	3-chlorocatechol	(2E,4Z)-2-chloromuconic acid	Chlorocatechol 1,2-dioxygenase	Oxygenation	RHEA	34755880
MMDBr0016395	3,5-dichlorocatechol	(2E,4E)-2,4-dichloromuconic acid	Chlorocatechol 1,2-dioxygenase	Oxygenation	RHEA	34755880
MMDBr0016521	Dimethyl sulfone	Flavin mononucleotide	FMNH(2)-dependent dimethylsulfone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016636	Indole	Indoxyl	Indole-3-acetate monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016637	Indole	Indoxyl	Indole-3-acetate monooxygenase	Oxygenation	RHEA	34755880
MMDBr0016832	(1S,4S)-bornane-2,5-dione	(1S,4S)-5-oxo-1,2-campholide	3,6-diketocamphane 1,6-monooxygenase	Oxygenation	RHEA	34755880
MMDBr0017179	Ethanol	Acetaldehyde	Quinoprotein ethanol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0017180	Ethanol	Acetaldehyde	Quinoprotein ethanol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0017181	Propyl alcohol	Propanal	Quinoprotein ethanol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0017716	(S)-2-chloropropanoic acid	D-Lactic acid	(S)-2-haloacid dehalogenase	Dehalogenation	RHEA	34755880
MMDBr0017834	(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate	D-Glyceraldehyde 3-phosphate	Tryptophan synthase	Synthesis	RHEA	34755880
MMDBr0017838	(6S)-5-methyl-5,6,7,8-tetrahydrofolic acid	(6S)-5,6,7,8-tetrahydrofolic acid	Methionine synthase	Synthesis	RHEA	34755880
MMDBr0017890	L-Proline	1-Pyrroline-2-carboxylic acid	Delta(1)-pyrroline-2-carboxylate reductase	Reduction	RHEA	34755880
MMDBr0017903	L-Histidine	Trans-urocanate	Histidine ammonia-lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0017905	Chorismate	2-Aminobenzoic acid	Aminodeoxychorismate/anthranilate synthase component 2	Synthesis	RHEA	34755880
MMDBr0017911	L-Methionine	2-oxobutanoic acid	L-methionine gamma-lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0024402	NAD	Hydrogen Ion	Aryl-alcohol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024448	alpha-Ketoisovaleric acid	Carbon dioxide	2-oxoisovalerate dehydrogenase subunit alpha	Dehydrogenation	RHEA	34755880
MMDBr0024453	(1R,4R)-camphor	(1R,4R,5R)-5-hydroxycamphor	Camphor 5-monooxygenase	Oxygenation	RHEA	34755880
MMDBr0024493	NAD	Hydrogen Ion	Dihydrolipoyl dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024498	Succinyl-CoA	CoA	Multifunctional 2-oxoglutarate metabolism enzyme	Dehydrogenation	RHEA	34755880
MMDBr0024513	(S)-mandelate	phenylglyoxylate	(S)-mandelate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024514	(S)-mandelate	phenylglyoxylate	(S)-mandelate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024533	L-Glutamine	Ammonium	Probable chemoreceptor glutamine deamidase CheD	Deamidation	RHEA	34755880
MMDBr0024537	di-mu-Sulfido-diiron(1+)	di-mu-Sulfido-diiron(2+)	Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component	Reduction	RHEA	34755880
MMDBr0024550	Acetyl-CoA	CoA	Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system	Dehydrogenation	RHEA	34755880
MMDBr0024608	Isobutyryl-CoA	CoA	Dihydrolipoyllysine-residue acyltransferase component of branched-chain alpha-ketoacid dehydrogenase complex	Dehydrogenation	RHEA	34755880
MMDBr0024650	di-mu-Sulfido-diiron(1+)	di-mu-Sulfido-diiron(2+)	Ferredoxin--NADP reductase	Dehydrogenation; Reduction	RHEA	34755880
MMDBr0024688	Acetyl-CoA	CoA	3-ketoacyl-CoA thiolase	Carbon‚Äìcarbon-bond formation	RHEA	34755880
MMDBr0024716	NAD	Hydrogen Ion	Fatty acid oxidation complex subunit alpha	Dehydrogenation	RHEA	34755880
MMDBr0024731	FMNH2	Flavin mononucleotide	Alkanesulfonate monooxygenase	Oxygenation	RHEA	34755880
MMDBr0024813	Dimethylallylpyrophosphate	diphosphate	tRNA dimethylallyltransferase	Transfer of a dimethylallyl group	RHEA	34755880
MMDBr0024834	S-Adenosylmethionine	S-Adenosylhomocysteine	Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE	Methylation	RHEA	34755880
MMDBr0024904	di-mu-Sulfido-diiron(1+)	di-mu-Sulfido-diiron(2+)	Putidaredoxin reductase CamA	Reduction	RHEA	34755880
MMDBr0024918	Ethanol	Acetaldehyde	Quinoprotein ethanol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0025066	S-Adenosylmethionine	S-Adenosylhomocysteine	Demethylmenaquinone methyltransferase	Methylation	RHEA	34755880
MMDBr0025067	L-Serine	diphosphate	Phosphoribosyl-dephospho-CoA transferase	Transfer of phosphoribosyl-dephospho-CoA	RHEA	34755880
MMDBr0025078	S-Adenosylmethionine	S-Adenosylhomocysteine	Ribosomal RNA small subunit methyltransferase G	Methylation	RHEA	34755880
MMDBr0025216	Hydrogen Ion	NAD	NAD(P)H dehydrogenase (quinone)	Dehydrogenation; Redox reaction; Reduction	RHEA	34755880
MMDBr0025217	Hydrogen Ion	NADP(+)	NAD(P)H dehydrogenase (quinone)	Dehydrogenation; Redox reaction; Reduction	RHEA	34755880
MMDBr0025373	Iron(3+)	Hydrogen Ion	Quinoprotein ethanol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0025374	Iron(3+)	Hydrogen Ion	Quinoprotein ethanol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0025378	Copper	Cu(+)	Quinohemoprotein alcohol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0026126	L-Alanine	D-Alanine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026127	L-Lysine	D-Lysine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026128	L-Serine	D-Serine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026129	L-Proline	D-Proline	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026130	L-Cysteine	D-Cysteine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026131	L-Glutamine	D-Glutamine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026132	L-Aspartic acid	D-Aspartic acid	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026133	L-Methionine	D-methionine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026134	L-Valine	D-Valine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026135	L-Phenylalanine	D-phenylalanine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026136	L-Tryptophan	D-Tryptophan	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026137	L-Leucine	D-Leucine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026138	L-Tyrosine	D-Tyrosine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039017	L-Homoserine	D-homoserine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039018	L-Leucine	D-Leucine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039019	L-Phenylalanine	D-phenylalanine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039020	L-Proline	D-Proline	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039021	L-Threonine	D-Threonine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039022	L-Tyrosine	D-Tyrosine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039023	L-Valine	D-Valine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880

Genome Data

Genome Link

MMDBm0000334

Genome Length

6244654 bp

# Predicted Proteins

5793

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-28 03:48:40 UTC

Reference

PMID: 17704766

Source Links

GenBank

NC_021505