MiMeDB: Rhodobacter sphaeroides (MMDBm0456231)

Microbe Identification

Microbe name

Rhodobacter sphaeroides

NCBI Taxonomy ID

1063

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Proteobacteria

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Rhodobacteraceae

Genus

Rhodobacter

Species

sphaeroides

Strain

Not Available

Microbe Properties

Gram staining properties

Positive

Shape

Not Available

Mobility

Not Available

Flagellar presence

Not Available

Number of membranes

Not Available

Oxygen preference

Not Available

Optimal temperature

Not Available

Temperature range

Not Available

Habitat

Not Available

Biotic relationship

Not Available

Cell arrangement

Not Available

Sporulation

Not Available

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012858	L-Iditol	Hydrogen Ion	Sorbitol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0012859	L-Iditol	Hydrogen Ion	Sorbitol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0012884	D-Glyceraldehyde 3-phosphate	(2R)-3-phospho-glyceroyl phosphate	Glyceraldehyde-3-phosphate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0012916	D-Glyceraldehyde 3-phosphate	aldehydo-D-ribose 5-phosphate	Transketolase	Transfer of ketol group	RHEA	34755880
MMDBr0012971	beta-D-Fructose 1,6-bisphosphate	beta-D-Fructose 6-phosphate	Fructose-1,6-bisphosphatase/inositol-1-monophosphatase	Aldol addition (or reverse); Dephosphorylation	RHEA	34755880
MMDBr0013009	Fe2+	Iron(3+)	Cbb3-type cytochrome c oxidase subunit CcoN1	Oxidation	RHEA	34755880
MMDBr0013078	D-Mannitol	D-Fructose	Mannitol dehydrogenase DSF1	Dehydrogenation	RHEA	34755880
MMDBr0013164	alpha-Ketoglutarate	(2R)-Homocitric acid	Homocitrate synthase AksA	Synthesis	RHEA	34755880
MMDBr0013309	Phosphoglycolic acid	Glycolic acid	Phosphoglycolate phosphatase	Dephosphorylation	RHEA	34755880
MMDBr0013347	beta-D-Fructose 1,6-bisphosphate	D-Glyceraldehyde 3-phosphate	Fructose-bisphosphate aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0013861	Adenosine triphosphate	ADP	Probable phosphoribulokinase	Phosphorylation	RHEA	34755880
MMDBr0014017	Galactitol	Hydrogen Ion	Galactitol 2-dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014018	Galactitol	Hydrogen Ion	Sorbitol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014135	Water	Deoxyadenosine	Adenosylhomocysteinase	Reversible hydrolysis	RHEA	34755880
MMDBr0014295	(2R)-3-phosphoglyceric acid	Carbon dioxide	Ribulose bisphosphate carboxylase large chain	Carboxylation	RHEA	34755880
MMDBr0014428	Iron(3+)	Fe2+	Dimethyl sulfoxide/trimethylamine N-oxide reductase	Reduction	RHEA	34755880
MMDBr0014776	Farnesyl pyrophosphate	diphosphate	Protoheme IX farnesyltransferase, mitochondrial	Farnesylation	RHEA	34755880
MMDBr0015190	Hydrogen Ion	Sorbitol	Sorbitol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0015191	Sorbitol	Hydrogen Ion	Sorbitol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0015325	Guanosine triphosphate	diphosphate	Molybdenum cofactor guanylyltransferase	Synthesis	RHEA	34755880
MMDBr0015518	D-Ribulose 1,5-bisphosphate	(2R)-3-phosphoglyceric acid	Ribulose bisphosphate carboxylase large chain	Carboxylation	RHEA	34755880
MMDBr0015848	D-Psicose	keto-D-fructose	D-psicose 3-epimerase	Epimerization	RHEA	34755880
MMDBr0015885	D-Tagatose	keto-D-sorbose	D-tagatose 3-epimerase	Epimerization	RHEA	34755880
MMDBr0016110	Methyl-Succinyl Coenzyme A	Mesaconyl-CoA	(2S)-methylsuccinyl-CoA dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0016372	Hydrogen Ion	Hydrogen Ion	NAD(P) transhydrogenase subunit alpha	Hydrogenation	RHEA	34755880
MMDBr0016552	D-Ribulose	D-Xylulose	D-tagatose 3-epimerase	Epimerization	RHEA	34755880
MMDBr0016560	Galactitol	Hydrogen Ion	Galactitol 2-dehydrogenase (L-tagatose-forming)	Dehydrogenation	RHEA	34755880
MMDBr0016748	D-xylulose 1,5-bisphosphate	Xylulose 5-phosphate	Protein CbbY	Not Available	RHEA	34755880
MMDBr0017872	L-Glutamic acid	alpha-Ketoglutarate	Archaeal glutamate synthase [NADPH]	Synthesis	RHEA	34755880
MMDBr0017876	Adenosine triphosphate	ADP	Glutamine synthetase	Synthesis	RHEA	34755880
MMDBr0024370	S-Adenosylmethionine	Hydrogen Ion	Phosphatidylethanolamine N-methyltransferase	Methylation	RHEA	34755880
MMDBr0024380	Iron(3+)	Hydrogen Ion	Ubiquinol-cytochrome c reductase iron-sulfur subunit	Reduction	RHEA	34755880
MMDBr0024497	S-Adenosylmethionine	Hydrogen Ion	Type I restriction enzyme MjaVII methylase subunit	Methylation	RHEA	34755880
MMDBr0024533	Water	Ammonium	Probable chemoreceptor glutamine deamidase CheD	Deamidation	RHEA	34755880
MMDBr0024686	Water	Hydrogen Ion	Nitrogenase iron protein	Nitrogen fixation	RHEA	34755880
MMDBr0024838	Water	Dimethyl sulfoxide	Putative dimethyl sulfoxide reductase catalytic subunit A	Reduction	RHEA	34755880
MMDBr0024970	di-mu-Sulfido-diiron(2+)	Water	Chlorophyllide reductase subunit Z	Reduction	RHEA	34755880
MMDBr0025070	alpha-maltose 1-phosphate	Phosphate	Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase	Transfer of an alpha-1,4-glucan:maltose-1-phosphate maltosyl group	RHEA	34755880
MMDBr0025309	di-mu-Sulfido-diiron(2+)	Water	Chlorophyllide reductase subunit Z	Reduction	RHEA	34755880
MMDBr0025310	di-mu-Sulfido-diiron(2+)	Water	Chlorophyllide reductase subunit Z	Reduction	RHEA	34755880
MMDBr0025620	L-Cysteine	Hydrogen Ion	Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase	Transfer of the diacylglyceryl group	RHEA	34755880

Genome Data

Genome Link

MMDBm0456231

Genome Length

1316185 bp

# Predicted Proteins

1176

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-29 16:10:22 UTC

Reference

PMID: 17704766

Source Links

GenBank

NC_011958