| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0098142 | Kluyveromyces lactis NRRL Y-1140 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0029062 | Aspergillus nidulans FGSC A4 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0017978 | Bipolaris zeicola | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0048946 | Glarea lozoyensis ATCC 20868 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0079093 | Pyricularia oryzae 70-15 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0001953 | Archaeoglobus fulgidus DSM 4304 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002424 | Pyrococcus horikoshii OT3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001818 | Methanocaldococcus jannaschii DSM 2661 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001849 | Methanothermobacter thermautotrophicus str. Delta H | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0763254 | Lysinibacillus fusiformis ZB2 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0793769 | Lactococcus raffinolactis 4877 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0802992 | [Clostridium] indolis DSM 755 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0648002 | Bifidobacterium animalis subsp. lactis Bi-07 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000122 | Clostridium botulinum F str. 230613 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000975 | Bacteroides sp. 2_1_33B | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0805074 | Peptostreptococcus anaerobius VPI 4330 = DSM 2949 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000227 | Paenibacillus barengoltzii G22 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0724384 | Eggerthella sp. 1_3_56FAA | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0649135 | Corynebacterium tuberculostearicum SK141 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0641709 | Brachyspira pilosicoli B2904 | Bacteria | Spirochaetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0803018 | [Ruminococcus] lactaris ATCC 29176 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0658816 | Rhodococcus hoagii NBRC 101255 = C 7 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
