| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0029062 | Aspergillus nidulans FGSC A4 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0017978 | Bipolaris zeicola | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0079093 | Pyricularia oryzae 70-15 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0048946 | Glarea lozoyensis ATCC 20868 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0098142 | Kluyveromyces lactis NRRL Y-1140 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0001818 | Methanocaldococcus jannaschii DSM 2661 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001849 | Methanothermobacter thermautotrophicus str. Delta H | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001953 | Archaeoglobus fulgidus DSM 4304 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002424 | Pyrococcus horikoshii OT3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0000046 | Bacteroides fragilis NCTC 9343 | Bacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0555709 | Pantoea agglomerans IG1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0503661 | Neisseria cinerea ATCC 14685 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001503 | Cryptobacterium curtum DSM 15641 | Bacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0724109 | Collinsella stercoris DSM 13279 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000090 | Bifidobacterium thermophilum RBL67 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0805654 | Pseudoflavonifractor capillosus ATCC 29799 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0394035 | Prevotella shahii DSM 15611 = JCM 12083 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0805392 | Agathobaculum desmolans ATCC 43058 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0786735 | Enterococcus | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002563 | Staphylococcus haemolyticus JCSC1435 | Bacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0560531 | Serratia liquefaciens ATCC 27592 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001685 | Helicobacter pylori 26695 | Bacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
