| MMDBm0000015 | Akkermansia muciniphila ATCC BAA-835 | Bacteria | Verrucomicrobia | Human | Metabolic reconstruction | VMH |
| MMDBm0810309 | Anaerococcus vaginalis ATCC 51170 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810479 | Peptoniphilus indolicus ATCC 29427 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810484 | Peptoniphilus lacrimalis DSM 7455 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810498 | Peptoniphilus timonensis JC401 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810781 | Kallipyga massiliensis ph2 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810478 | Peptoniphilus harei ACS-146-V-Sch2b | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002641 | Sulfolobus solfataricus P2 | Archaea | Crenarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0882004 | Acidianus ambivalens | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0881917 | Methanomassiliicoccus luminyensis B10 | Archaea | Euryarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001024 | Thermodesulfobacterium geofontis | Bacteria | Thermodesulfobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000981 | Thermodesulfatator atlanticus | Bacteria | Thermodesulfobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000396 | Thermodesulfobacterium thermophilum | Bacteria | Thermodesulfobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0645211 | Acetomicrobium hydrogeniformans | Bacteria | Synergistetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0645329 | Pyramidobacter piscolens W5455 | Bacteria | Synergistetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0645329 | Pyramidobacter piscolens W5455 | Bacteria | Synergistetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000107 | Cloacibacillus evryensis DSM 19522 | Bacteria | Synergistetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000254 | Pyramidobacter piscolens | Bacteria | Synergistetes | Human | Microbial culture | Not Available |
| MMDBm0641709 | Brachyspira pilosicoli B2904 | Bacteria | Spirochaetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001974 | Leptospira interrogans serovar Lai str. 56601 | Bacteria | Spirochaetes | Not Available | Not Available | RHEA |
| MMDBm0001982 | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 | Bacteria | Spirochaetes | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0639412 | Schlesneria paludicola DSM 18645 | Bacteria | Planctomycetes | Human Feces | Metabolic reconstruction | VMH |
