| MMDBm0081587 | Thermothelomyces thermophilus ATCC 42464 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0086916 | Rosellinia sp. | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098142 | Kluyveromyces lactis NRRL Y-1140 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0017978 | Bipolaris zeicola | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0048946 | Glarea lozoyensis ATCC 20868 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0029062 | Aspergillus nidulans FGSC A4 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0059058 | Beauveria bassiana | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0002424 | Pyrococcus horikoshii OT3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001953 | Archaeoglobus fulgidus DSM 4304 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002690 | Thermococcus kodakarensis KOD1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001818 | Methanocaldococcus jannaschii DSM 2661 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001849 | Methanothermobacter thermautotrophicus str. Delta H | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0648137 | Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0794420 | Streptococcus constellatus subsp. pharyngis SK1060 = CCUG 46377 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0648041 | Bifidobacterium breve HPH0326 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0790338 | Lactobacillus rhamnosus LMS2-1 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0790545 | Lactobacillus iners DSM 13335 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0798609 | Clostridium botulinum E1 str. 'BoNT E Beluga' | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000246 | Prevotella intermedia | Bacteria | Bacteroidetes | Human | Metabolic reconstruction | VMH |
| MMDBm0533412 | Citrobacter amalonaticus Y19 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0562438 | Yersinia frederiksenii ATCC 33641 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0503667 | Neisseria elongata subsp. glycolytica ATCC 29315 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
