| MMDBm0098956 | Zygosaccharomyces rouxii | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0136863 | Grifola frondosa | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0121434 | Pleurotus pulmonarius | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0000690 | Candida dubliniensis | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0159119 | Encephalitozoon cuniculi GB-M1 | Fungi | Microsporidia | Not Available | Not Available | RHEA |
| MMDBm0139153 | Lentinus sajor-caju | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0000585 | Candida tropicalis | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0000584 | Candida albicans | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0000599 | Naumovozyma dairenensis | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0002701 | Thermoplasma acidophilum DSM 1728 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0882065 | Thermoproteus tenax Kra 1 | Archaea | Not Available | Not Available | Not Available | RHEA |
| MMDBm0794553 | Streptococcus lutetiensis 033 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0663577 | Brevibacterium casei S18 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0779540 | Staphylococcus hominis subsp. hominis C80 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0648159 | Bifidobacterium ruminantium DSM 6489 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0534735 | Enterobacter cloacae EcWSU1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002160 | Corynebacterium ulcerans 809 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000633 | Staphylococcus capitis | Bacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0544444 | Klebsiella michiganensis KCTC 1686 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000185 | Fusobacterium nucleatum subsp. nucleatum ATCC 25586 | Bacteria | Fusobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0562387 | Yersinia bercovieri | Bacteria | Proteobacteria | Human | Not Available | VMH |
