| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0095324 | Candida albicans SC5314 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000690 | Candida dubliniensis | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0000584 | Candida albicans | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0028950 | Aspergillus niger | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0000586 | Leishmania major | Eukaryota | Euglenozoa | Not Available | Microbial culture | Not Available |
| MMDBm0002425 | Pyrococcus furiosus DSM 3638 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002424 | Pyrococcus horikoshii OT3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002690 | Thermococcus kodakarensis KOD1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0882063 | Thermococcus litoralis DSM 5473 | Archaea | Not Available | Not Available | Not Available | RHEA |
| MMDBm0002423 | Pyrococcus abyssi GE5 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002693 | Thermococcus sibiricus MM 739 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0563066 | Plesiomonas shigelloides 302-73 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0503763 | Neisseria macacae ATCC 33926 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0794415 | Streptococcus constellatus subsp. constellatus SK53 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0808830 | Solobacterium moorei DSM 22971 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0730186 | Bacillus thuringiensis serovar thuringiensis str. T01001 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0801616 | Anaerofustis stercorihominis DSM 17244 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000363 | Enterobacter cloacae | Bacteria | Proteobacteria | Human | Not Available | VMH |
| MMDBm0393911 | Prevotella albensis | Bacteria | Bacteroidetes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0000120 | Clostridium botulinum A str. ATCC 19397 | Bacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0000097 | Brevibacillus brevis NBRC 100599 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000181 | Faecalibacterium prausnitzii SL3/3 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0786738 | Enterococcus asini ATCC 700915 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0555709 | Pantoea agglomerans IG1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
