MiMeDB: Showing metabocard for GDP-4-Dehydro-6-deoxy-D-mannose (MMDBc0029625)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-17 23:35:07 UTC

Update Date

2024-04-30 19:39:35 UTC

Metabolite ID

MMDBc0029625

Metabolite Identification

Common Name

GDP-4-Dehydro-6-deoxy-D-mannose

Description

GDP-4-Dehydro-6-deoxy-D-mannose is an intermediate in fructose and mannose metabolism. GDP-4-Dehydro-6-deoxy-D-mannose is generated by GDP-D-mannose-4,6-dehydratase (GMD). This compound is then converted by the FX protein (GDP-4-keto-6-D-deoxymannose epimerase/GDP-4-keto-6-L-galactose reductase) to GDP-L-fucose. (PMID: 11698403 ). It is also involved in amino sugar and nucleotide sugar metabolism. (KEGG)

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652306222023532D          

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 15 46  1  1  0  0  0
M  END

HMDB0001346
     RDKit          3D
GDP-4-Dehydro-6-deoxy-D-mannose
 61 64  0  0  0  0  0  0  0  0999 V2000
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M  END


  Mrv1652306222023532D          

 46 49  0  0  1  0            999 V2000
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    0.4610   -2.0824    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4216   -9.2720    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9818   -1.5666    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8404   -7.9666    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  4  1  1  1  0  0  0
  5  2  1  1  0  0  0
  7  4  1  0  0  0  0
  8  5  1  0  0  0  0
  9  7  1  0  0  0  0
 10  8  1  0  0  0  0
 11  9  1  0  0  0  0
 12  6  2  0  0  0  0
 13  6  1  0  0  0  0
 14 10  1  0  0  0  0
 15 11  1  0  0  0  0
 17 16  2  0  0  0  0
 18  3  2  0  0  0  0
 18  6  1  0  0  0  0
 19 12  1  0  0  0  0
 19 16  1  0  0  0  0
 20 13  2  0  0  0  0
 20 16  1  0  0  0  0
 21  3  1  0  0  0  0
 21 12  1  0  0  0  0
 14 21  1  1  0  0  0
 22  7  2  0  0  0  0
  8 23  1  6  0  0  0
  9 24  1  1  0  0  0
 10 25  1  6  0  0  0
 11 26  1  1  0  0  0
 27 13  1  0  0  0  0
 32  2  1  0  0  0  0
 33  4  1  0  0  0  0
 33 15  1  0  0  0  0
 34  5  1  0  0  0  0
 34 14  1  0  0  0  0
 15 35  1  6  0  0  0
 37 28  1  0  0  0  0
 37 29  2  0  0  0  0
 37 32  1  0  0  0  0
 37 36  1  0  0  0  0
 38 30  1  0  0  0  0
 38 31  2  0  0  0  0
 38 35  1  0  0  0  0
 38 36  1  0  0  0  0
  4 39  1  6  0  0  0
  5 40  1  6  0  0  0
  8 41  1  1  0  0  0
  9 42  1  6  0  0  0
 10 43  1  1  0  0  0
 11 44  1  6  0  0  0
 14 45  1  6  0  0  0
 15 46  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0029625

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@]1(COP(O)(=O)OP(O)(=O)O[C@@]2([H])O[C@]([H])(C)C(=O)[C@]([H])(O)[C@]2([H])O)O[C@@]([H])(N2C=NC3=C2NC(=N)N=C3O)[C@]([H])(O)[C@]1([H])O

> <INCHI_IDENTIFIER>
InChI=1S/C16H23N5O15P2/c1-4-7(22)9(24)11(26)15(33-4)35-38(30,31)36-37(28,29)32-2-5-8(23)10(25)14(34-5)21-3-18-6-12(21)19-16(17)20-13(6)27/h3-5,8-11,14-15,23-26H,2H2,1H3,(H,28,29)(H,30,31)(H3,17,19,20,27)/t4-,5-,8-,9+,10-,11+,14-,15-/m1/s1

> <INCHI_KEY>
PNHLMHWWFOPQLK-BKUUWRAGSA-N

> <FORMULA>
C16H23N5O15P2

> <MOLECULAR_WEIGHT>
587.3258

> <EXACT_MASS>
587.066588115

> <JCHEM_ACCEPTOR_COUNT>
15

> <JCHEM_ATOM_COUNT>
61

> <JCHEM_AVERAGE_POLARIZABILITY>
48.011189405107416

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
8

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
[({[(2R,3S,4R,5R)-5-(2-amino-6-oxo-6,9-dihydro-1H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]({[(2R,3S,4R,6R)-3,4-dihydroxy-6-methyl-5-oxooxan-2-yl]oxy})phosphinic acid

> <ALOGPS_LOGP>
-1.28

> <JCHEM_LOGP>
-3.625497991999999

> <ALOGPS_LOGS>
-1.97

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
4

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
3.1762589158164913

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.7324931621412873

> <JCHEM_PKA_STRONGEST_BASIC>
-3.668913176691966

> <JCHEM_POLAR_SURFACE_AREA>
304.03999999999996

> <JCHEM_REFRACTIVITY>
116.20089999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
6.35e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
gdp-4-keto-6-deoxymannose

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0001346
     RDKit          3D
GDP-4-Dehydro-6-deoxy-D-mannose
 61 64  0  0  0  0  0  0  0  0999 V2000
   -8.0178    0.2080    1.6142 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7914    0.6809    0.2049 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.5253    1.2267    0.0208 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4983    0.3332    0.1806 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3566    0.9140   -0.4163 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1142    1.1602    0.6687 P   0  0  0  0  0  5  0  0  0  0  0  0
   -3.6676    1.4359    2.0687 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1216    2.4431    0.2701 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1702   -0.2422    0.8018 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3633   -0.5561   -0.6486 P   0  0  0  0  0  5  0  0  0  0  0  0
   -1.6305   -2.0139   -0.9903 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9619    0.4871   -1.8227 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2920   -0.2869   -0.4782 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6269    0.0198    0.8401 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0859    0.2637    1.0242 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8706   -0.8355    0.6792 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1533   -0.3440    0.8559 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1570   -1.2457    0.3262 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.0895   -2.5557    0.0882 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2630   -2.9886   -0.4070 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.1132   -1.9421   -0.4942 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4170   -1.7906   -0.9181 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0508   -2.7820   -1.3368 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0207   -0.5933   -0.8892 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.3129    0.4610   -0.4322 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8873    1.7596   -0.3730 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.0354    0.3387   -0.0116 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.3837   -0.8532   -0.0226 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1159    0.9495    0.0665 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8793    1.9166    0.6768 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6353    1.3323    0.1145 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4489    2.6039    0.6263 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6947   -0.9973   -0.4650 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.9980   -2.0105    0.4492 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8146   -0.9521   -1.4825 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.0554   -2.2029   -2.0206 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0012   -0.3854   -0.7989 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1074   -0.7819   -1.0532 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8138   -0.5780    1.5901 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1065   -0.1088    2.1334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4523    1.0460    2.2289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5239    1.4888   -0.0006 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2188    0.2010    1.2665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3007    2.8332   -0.6214 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3466    0.6315   -2.5767 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3043   -0.7483    1.5510 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0905    0.9558    1.0897 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2710    0.4724    2.0907 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3004   -0.1303    1.9191 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2441   -3.1862    0.2567 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0035   -0.4399   -1.2009 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5422    2.4722    0.3262 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6613    2.0686   -1.0023 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4298    0.8023   -0.9907 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3192    2.5992    1.0820 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1643    1.2253   -0.8735 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4912    2.6843    0.8683 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7552   -1.3465   -0.9854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5161   -2.8404    0.2796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5145   -0.2088   -2.2616 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2220   -2.0678   -3.0061 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  6  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 10 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  2  0
 27 28  1  0
 17 29  1  0
 29 30  1  0
 29 31  1  0
 31 32  1  0
  4 33  1  0
 33 34  1  0
 33 35  1  0
 35 36  1  0
 35 37  1  0
 37 38  2  0
 37  2  1  0
 31 15  1  0
 28 18  1  0
 28 21  2  0
  1 39  1  0
  1 40  1  0
  1 41  1  0
  2 42  1  6
  4 43  1  1
  8 44  1  0
 12 45  1  0
 14 46  1  0
 14 47  1  0
 15 48  1  1
 17 49  1  1
 19 50  1  0
 24 51  1  0
 26 52  1  0
 26 53  1  0
 29 54  1  6
 30 55  1  0
 31 56  1  6
 32 57  1  0
 33 58  1  6
 34 59  1  0
 35 60  1  6
 36 61  1  0
M  END

HEADER    PROTEIN                                 22-JUN-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   22-JUN-20         0                                  
HETATM    1  C   UNK     0     -10.769 -13.897   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -3.454  -6.934   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.173  -1.303   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -9.362 -14.523   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -2.208  -6.029   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       1.197  -0.533   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -9.201 -16.055   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -0.744  -6.505   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -7.794 -16.681   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       0.161  -5.259   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -6.548 -15.776   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       1.197  -2.073   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.530   0.237   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      -0.744  -4.013   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -6.709 -14.245   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       3.864  -2.073   0.000  0.00  0.00           C+0
HETATM   17  N   UNK     0       5.198  -2.843   0.000  0.00  0.00           N+0
HETATM   18  N   UNK     0      -0.268  -0.057   0.000  0.00  0.00           N+0
HETATM   19  N   UNK     0       2.530  -2.843   0.000  0.00  0.00           N+0
HETATM   20  N   UNK     0       3.864  -0.533   0.000  0.00  0.00           N+0
HETATM   21  N   UNK     0      -0.268  -2.549   0.000  0.00  0.00           N+0
HETATM   22  O   UNK     0     -10.447 -16.960   0.000  0.00  0.00           O+0
HETATM   23  O   UNK     0      -0.268  -7.970   0.000  0.00  0.00           O+0
HETATM   24  O   UNK     0      -7.633 -18.213   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0       1.701  -5.259   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0      -5.141 -16.403   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       2.530   1.777   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0      -5.444  -8.125   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      -3.634 -10.617   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0      -7.156 -11.969   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      -4.092 -11.647   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0      -3.293  -8.466   0.000  0.00  0.00           O+0
HETATM   33  O   UNK     0      -8.116 -13.618   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0      -2.208  -4.489   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0      -5.463 -13.340   0.000  0.00  0.00           O+0
HETATM   36  O   UNK     0      -5.785 -10.276   0.000  0.00  0.00           O+0
HETATM   37  P   UNK     0      -4.539  -9.371   0.000  0.00  0.00           P+0
HETATM   38  P   UNK     0      -5.624 -11.808   0.000  0.00  0.00           P+0
HETATM   39  H   UNK     0     -10.608 -15.429   0.000  0.00  0.00           H+0
HETATM   40  H   UNK     0      -1.967  -7.550   0.000  0.00  0.00           H+0
HETATM   41  H   UNK     0       0.777  -6.746   0.000  0.00  0.00           H+0
HETATM   42  H   UNK     0      -9.040 -17.587   0.000  0.00  0.00           H+0
HETATM   43  H   UNK     0       0.861  -3.887   0.000  0.00  0.00           H+0
HETATM   44  H   UNK     0      -6.387 -17.308   0.000  0.00  0.00           H+0
HETATM   45  H   UNK     0      -1.833  -2.924   0.000  0.00  0.00           H+0
HETATM   46  H   UNK     0      -5.302 -14.871   0.000  0.00  0.00           H+0
CONECT    1    4                                                            
CONECT    2    5   32                                                       
CONECT    3   18   21                                                       
CONECT    4    1    7   33   39                                             
CONECT    5    2    8   34   40                                             
CONECT    6   12   13   18                                                  
CONECT    7    4    9   22                                                  
CONECT    8    5   10   23   41                                             
CONECT    9    7   11   24   42                                             
CONECT   10    8   14   25   43                                             
CONECT   11    9   15   26   44                                             
CONECT   12    6   19   21                                                  
CONECT   13    6   20   27                                                  
CONECT   14   10   21   34   45                                             
CONECT   15   11   33   35   46                                             
CONECT   16   17   19   20                                                  
CONECT   17   16                                                            
CONECT   18    3    6                                                       
CONECT   19   12   16                                                       
CONECT   20   13   16                                                       
CONECT   21    3   12   14                                                  
CONECT   22    7                                                            
CONECT   23    8                                                            
CONECT   24    9                                                            
CONECT   25   10                                                            
CONECT   26   11                                                            
CONECT   27   13                                                            
CONECT   28   37                                                            
CONECT   29   37                                                            
CONECT   30   38                                                            
CONECT   31   38                                                            
CONECT   32    2   37                                                       
CONECT   33    4   15                                                       
CONECT   34    5   14                                                       
CONECT   35   15   38                                                       
CONECT   36   37   38                                                       
CONECT   37   28   29   32   36                                             
CONECT   38   30   31   35   36                                             
CONECT   39    4                                                            
CONECT   40    5                                                            
CONECT   41    8                                                            
CONECT   42    9                                                            
CONECT   43   10                                                            
CONECT   44   11                                                            
CONECT   45   14                                                            
CONECT   46   15                                                            
MASTER        0    0    0    0    0    0    0    0   46    0   98    0
END

COMPND    HMDB0001346
HETATM    1  C1  UNL     1      -8.018   0.208   1.614  1.00  0.00           C  
HETATM    2  C2  UNL     1      -7.791   0.681   0.205  1.00  0.00           C  
HETATM    3  O1  UNL     1      -6.525   1.227   0.021  1.00  0.00           O  
HETATM    4  C3  UNL     1      -5.498   0.333   0.181  1.00  0.00           C  
HETATM    5  O2  UNL     1      -4.357   0.914  -0.416  1.00  0.00           O  
HETATM    6  P1  UNL     1      -3.114   1.160   0.669  1.00  0.00           P  
HETATM    7  O3  UNL     1      -3.668   1.436   2.069  1.00  0.00           O  
HETATM    8  O4  UNL     1      -2.122   2.443   0.270  1.00  0.00           O  
HETATM    9  O5  UNL     1      -2.170  -0.242   0.802  1.00  0.00           O  
HETATM   10  P2  UNL     1      -1.363  -0.556  -0.649  1.00  0.00           P  
HETATM   11  O6  UNL     1      -1.631  -2.014  -0.990  1.00  0.00           O  
HETATM   12  O7  UNL     1      -1.962   0.487  -1.823  1.00  0.00           O  
HETATM   13  O8  UNL     1       0.292  -0.287  -0.478  1.00  0.00           O  
HETATM   14  C4  UNL     1       0.627   0.020   0.840  1.00  0.00           C  
HETATM   15  C5  UNL     1       2.086   0.264   1.024  1.00  0.00           C  
HETATM   16  O9  UNL     1       2.871  -0.835   0.679  1.00  0.00           O  
HETATM   17  C6  UNL     1       4.153  -0.344   0.856  1.00  0.00           C  
HETATM   18  N1  UNL     1       5.157  -1.246   0.326  1.00  0.00           N  
HETATM   19  C7  UNL     1       5.090  -2.556   0.088  1.00  0.00           C  
HETATM   20  N2  UNL     1       6.263  -2.989  -0.407  1.00  0.00           N  
HETATM   21  C8  UNL     1       7.113  -1.942  -0.494  1.00  0.00           C  
HETATM   22  C9  UNL     1       8.417  -1.791  -0.918  1.00  0.00           C  
HETATM   23  O10 UNL     1       9.051  -2.782  -1.337  1.00  0.00           O  
HETATM   24  N3  UNL     1       9.021  -0.593  -0.889  1.00  0.00           N  
HETATM   25  C10 UNL     1       8.313   0.461  -0.432  1.00  0.00           C  
HETATM   26  N4  UNL     1       8.887   1.760  -0.373  1.00  0.00           N  
HETATM   27  N5  UNL     1       7.035   0.339  -0.012  1.00  0.00           N  
HETATM   28  C11 UNL     1       6.384  -0.853  -0.023  1.00  0.00           C  
HETATM   29  C12 UNL     1       4.116   0.949   0.066  1.00  0.00           C  
HETATM   30  O11 UNL     1       4.879   1.917   0.677  1.00  0.00           O  
HETATM   31  C13 UNL     1       2.635   1.332   0.114  1.00  0.00           C  
HETATM   32  O12 UNL     1       2.449   2.604   0.626  1.00  0.00           O  
HETATM   33  C14 UNL     1      -5.695  -0.997  -0.465  1.00  0.00           C  
HETATM   34  O13 UNL     1      -5.998  -2.010   0.449  1.00  0.00           O  
HETATM   35  C15 UNL     1      -6.815  -0.952  -1.482  1.00  0.00           C  
HETATM   36  O14 UNL     1      -7.055  -2.203  -2.021  1.00  0.00           O  
HETATM   37  C16 UNL     1      -8.001  -0.385  -0.799  1.00  0.00           C  
HETATM   38  O15 UNL     1      -9.107  -0.782  -1.053  1.00  0.00           O  
HETATM   39  H1  UNL     1      -8.814  -0.578   1.590  1.00  0.00           H  
HETATM   40  H2  UNL     1      -7.106  -0.109   2.133  1.00  0.00           H  
HETATM   41  H3  UNL     1      -8.452   1.046   2.229  1.00  0.00           H  
HETATM   42  H4  UNL     1      -8.524   1.489  -0.001  1.00  0.00           H  
HETATM   43  H5  UNL     1      -5.219   0.201   1.266  1.00  0.00           H  
HETATM   44  H6  UNL     1      -2.301   2.833  -0.621  1.00  0.00           H  
HETATM   45  H7  UNL     1      -1.347   0.632  -2.577  1.00  0.00           H  
HETATM   46  H8  UNL     1       0.304  -0.748   1.551  1.00  0.00           H  
HETATM   47  H9  UNL     1       0.090   0.956   1.090  1.00  0.00           H  
HETATM   48  H10 UNL     1       2.271   0.472   2.091  1.00  0.00           H  
HETATM   49  H11 UNL     1       4.300  -0.130   1.919  1.00  0.00           H  
HETATM   50  H12 UNL     1       4.244  -3.186   0.257  1.00  0.00           H  
HETATM   51  H13 UNL     1      10.004  -0.440  -1.201  1.00  0.00           H  
HETATM   52  H14 UNL     1       8.542   2.472   0.326  1.00  0.00           H  
HETATM   53  H15 UNL     1       9.661   2.069  -1.002  1.00  0.00           H  
HETATM   54  H16 UNL     1       4.430   0.802  -0.991  1.00  0.00           H  
HETATM   55  H17 UNL     1       4.319   2.599   1.082  1.00  0.00           H  
HETATM   56  H18 UNL     1       2.164   1.225  -0.874  1.00  0.00           H  
HETATM   57  H19 UNL     1       1.491   2.684   0.868  1.00  0.00           H  
HETATM   58  H20 UNL     1      -4.755  -1.346  -0.985  1.00  0.00           H  
HETATM   59  H21 UNL     1      -5.516  -2.840   0.280  1.00  0.00           H  
HETATM   60  H22 UNL     1      -6.514  -0.209  -2.262  1.00  0.00           H  
HETATM   61  H23 UNL     1      -7.222  -2.068  -3.006  1.00  0.00           H  
CONECT    1    2   39   40   41
CONECT    2    3   37   42
CONECT    3    4
CONECT    4    5   33   43
CONECT    5    6
CONECT    6    7    7    8    9
CONECT    8   44
CONECT    9   10
CONECT   10   11   11   12   13
CONECT   12   45
CONECT   13   14
CONECT   14   15   46   47
CONECT   15   16   31   48
CONECT   16   17
CONECT   17   18   29   49
CONECT   18   19   28
CONECT   19   20   20   50
CONECT   20   21
CONECT   21   22   28   28
CONECT   22   23   23   24
CONECT   24   25   51
CONECT   25   26   27   27
CONECT   26   52   53
CONECT   27   28
CONECT   29   30   31   54
CONECT   30   55
CONECT   31   32   56
CONECT   32   57
CONECT   33   34   35   58
CONECT   34   59
CONECT   35   36   37   60
CONECT   36   61
CONECT   37   38   38
END

HMDB0001346
     RDKit          3D
GDP-4-Dehydro-6-deoxy-D-mannose
 61 64  0  0  0  0  0  0  0  0999 V2000
   -8.0178    0.2080    1.6142 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7914    0.6809    0.2049 C   0  0  1  0  0  0  0  0  0  0  0  0
   -6.5253    1.2267    0.0208 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4983    0.3332    0.1806 C   0  0  2  0  0  0  0  0  0  0  0  0
   -4.3566    0.9140   -0.4163 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1142    1.1602    0.6687 P   0  0  0  0  0  5  0  0  0  0  0  0
   -3.6676    1.4359    2.0687 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1216    2.4431    0.2701 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1702   -0.2422    0.8018 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3633   -0.5561   -0.6486 P   0  0  0  0  0  5  0  0  0  0  0  0
   -1.6305   -2.0139   -0.9903 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9619    0.4871   -1.8227 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.2920   -0.2869   -0.4782 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.6269    0.0198    0.8401 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0859    0.2637    1.0242 C   0  0  1  0  0  0  0  0  0  0  0  0
    2.8706   -0.8355    0.6792 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.1533   -0.3440    0.8559 C   0  0  1  0  0  0  0  0  0  0  0  0
    5.1570   -1.2457    0.3262 N   0  0  0  0  0  0  0  0  0  0  0  0
    5.0895   -2.5557    0.0882 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2630   -2.9886   -0.4070 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.1132   -1.9421   -0.4942 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4170   -1.7906   -0.9181 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.0508   -2.7820   -1.3368 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.0207   -0.5933   -0.8892 N   0  0  0  0  0  0  0  0  0  0  0  0
    8.3129    0.4610   -0.4322 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8873    1.7596   -0.3730 N   0  0  0  0  0  0  0  0  0  0  0  0
    7.0354    0.3387   -0.0116 N   0  0  0  0  0  0  0  0  0  0  0  0
    6.3837   -0.8532   -0.0226 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1159    0.9495    0.0665 C   0  0  2  0  0  0  0  0  0  0  0  0
    4.8793    1.9166    0.6768 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6353    1.3323    0.1145 C   0  0  2  0  0  0  0  0  0  0  0  0
    2.4489    2.6039    0.6263 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6947   -0.9973   -0.4650 C   0  0  1  0  0  0  0  0  0  0  0  0
   -5.9980   -2.0105    0.4492 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8146   -0.9521   -1.4825 C   0  0  1  0  0  0  0  0  0  0  0  0
   -7.0554   -2.2029   -2.0206 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0012   -0.3854   -0.7989 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1074   -0.7819   -1.0532 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8138   -0.5780    1.5901 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1065   -0.1088    2.1334 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4523    1.0460    2.2289 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5239    1.4888   -0.0006 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2188    0.2010    1.2665 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3007    2.8332   -0.6214 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3466    0.6315   -2.5767 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3043   -0.7483    1.5510 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0905    0.9558    1.0897 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2710    0.4724    2.0907 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3004   -0.1303    1.9191 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.2441   -3.1862    0.2567 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.0035   -0.4399   -1.2009 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5422    2.4722    0.3262 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.6613    2.0686   -1.0023 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4298    0.8023   -0.9907 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3192    2.5992    1.0820 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1643    1.2253   -0.8735 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.4912    2.6843    0.8683 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7552   -1.3465   -0.9854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5161   -2.8404    0.2796 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5145   -0.2088   -2.2616 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2220   -2.0678   -3.0061 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  2  0
  6  8  1  0
  6  9  1  0
  9 10  1  0
 10 11  2  0
 10 12  1  0
 10 13  1  0
 13 14  1  0
 14 15  1  0
 15 16  1  0
 16 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  2  0
 27 28  1  0
 17 29  1  0
 29 30  1  0
 29 31  1  0
 31 32  1  0
  4 33  1  0
 33 34  1  0
 33 35  1  0
 35 36  1  0
 35 37  1  0
 37 38  2  0
 37  2  1  0
 31 15  1  0
 28 18  1  0
 28 21  2  0
  1 39  1  0
  1 40  1  0
  1 41  1  0
  2 42  1  6
  4 43  1  1
  8 44  1  0
 12 45  1  0
 14 46  1  0
 14 47  1  0
 15 48  1  1
 17 49  1  1
 19 50  1  0
 24 51  1  0
 26 52  1  0
 26 53  1  0
 29 54  1  6
 30 55  1  0
 31 56  1  6
 32 57  1  0
 33 58  1  6
 34 59  1  0
 35 60  1  6
 36 61  1  0
M  END

Synonyms

Value	Source
GDP-4-Dehydro-6-deoxy-D-talose	ChEBI
GDP-4-Dehydro-D-rhamnose	ChEBI
GDP-4-Keto-6-deoxy-D-mannose	ChEBI
GDP-4-Keto-6-deoxymannose	ChEBI
GDP-4-oxo-6-Deoxy-D-mannose	ChEBI
Guanosine 5'-(trihydrogen diphosphate), p'-(6-deoxy-alpha-D-lyxo-hexopyranos-4-ulos-1-yl) ester	ChEBI
Guanosine diphosphate-4-keto-6-deoxy-D-mannose	ChEBI
GDP-4-Dehydro-alpha-D-rhamnose	Kegg
GDP-4-Dehydro-6-deoxy-alpha-D-mannose	Kegg
Guanosine 5'-(trihydrogen diphosphate), p'-(6-deoxy-a-D-lyxo-hexopyranos-4-ulos-1-yl) ester	Generator
Guanosine 5'-(trihydrogen diphosphate), p'-(6-deoxy-α-D-lyxo-hexopyranos-4-ulos-1-yl) ester	Generator
Guanosine 5'-(trihydrogen diphosphoric acid), p'-(6-deoxy-a-D-lyxo-hexopyranos-4-ulos-1-yl) ester	Generator
Guanosine 5'-(trihydrogen diphosphoric acid), p'-(6-deoxy-alpha-D-lyxo-hexopyranos-4-ulos-1-yl) ester	Generator
Guanosine 5'-(trihydrogen diphosphoric acid), p'-(6-deoxy-α-D-lyxo-hexopyranos-4-ulos-1-yl) ester	Generator
Guanosine diphosphoric acid-4-keto-6-deoxy-D-mannose	Generator
GDP-4-Dehydro-a-D-rhamnose	Generator
GDP-4-Dehydro-α-D-rhamnose	Generator
GDP-4-Dehydro-6-deoxy-a-D-mannose	Generator
GDP-4-Dehydro-6-deoxy-α-D-mannose	Generator
GDP-4-Keto-6-D-deoxymannose	HMDB
GDP-4-oxo-6-Deoxymannose	HMDB
Guanosine 5'-diphosphate 4-keto-6-deoxy-D-mannose	HMDB
Guanosine 5’-diphosphate 4-keto-6-deoxy-D-mannose	HMDB

Molecular Formula

C₁₆H₂₃N₅O₁₅P₂

Average Mass

587.3258

Monoisotopic Mass

587.066588115

IUPAC Name

[({[(2R,3S,4R,5R)-5-(2-amino-6-oxo-6,9-dihydro-1H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy]({[(2R,3S,4R,6R)-3,4-dihydroxy-6-methyl-5-oxooxan-2-yl]oxy})phosphinic acid

Traditional Name

gdp-4-keto-6-deoxymannose

CAS Registry Number

18186-48-6

SMILES

[H][C@]1(COP(O)(=O)OP(O)(=O)O[C@@]2([H])O[C@]([H])(C)C(=O)[C@]([H])(O)[C@]2([H])O)O[C@@]([H])(N2C=NC3=C2NC(=N)N=C3O)[C@]([H])(O)[C@]1([H])O

InChI Identifier

InChI=1S/C16H23N5O15P2/c1-4-7(22)9(24)11(26)15(33-4)35-38(30,31)36-37(28,29)32-2-5-8(23)10(25)14(34-5)21-3-18-6-12(21)19-16(17)20-13(6)27/h3-5,8-11,14-15,23-26H,2H2,1H3,(H,28,29)(H,30,31)(H3,17,19,20,27)/t4-,5-,8-,9+,10-,11+,14-,15-/m1/s1

InChI Key

PNHLMHWWFOPQLK-BKUUWRAGSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as purine nucleotide sugars. These are purine nucleotides bound to a saccharide derivative through the terminal phosphate group.

Kingdom

Organic compounds

Super Class

Nucleosides, nucleotides, and analogues

Class

Purine nucleotides

Sub Class

Purine nucleotide sugars

Direct Parent

Purine nucleotide sugars

Alternative Parents

Substituents

Purine nucleotide sugar
Purine ribonucleoside diphosphate
Purine ribonucleoside monophosphate
Pentose phosphate
Pentose-5-phosphate
Glycosyl compound
N-glycosyl compound
6-oxopurine
Hypoxanthine
Monosaccharide phosphate
Organic pyrophosphate
Imidazopyrimidine
Purine
Aminopyrimidine
Monoalkyl phosphate
Pyrimidone
Pyrimidine
Alkyl phosphate
Phosphoric acid ester
Oxane
Monosaccharide
Organic phosphoric acid derivative
N-substituted imidazole
Tetrahydrofuran
Vinylogous amide
Azole
Imidazole
Heteroaromatic compound
Cyclic ketone
Secondary alcohol
Ketone
Organoheterocyclic compound
Azacycle
Oxacycle
Hydrocarbon derivative
Primary amine
Organic oxide
Organopnictogen compound
Organic oxygen compound
Carbonyl group
Alcohol
Organic nitrogen compound
Organooxygen compound
Organonitrogen compound
Amine
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

GDP-sugar (CHEBI:16955 )

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Property	Value	Source
Water Solubility	6.35 g/L	ALOGPS
logP	-1.3	ALOGPS
logP	-3.6	ChemAxon
logS	-2	ALOGPS
pKa (Strongest Acidic)	1.73	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	15	ChemAxon
Hydrogen Donor Count	8	ChemAxon
Polar Surface Area	304.04 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	116.2 m³·mol⁻¹	ChemAxon
Polarizability	48.01 Å³	ChemAxon
Number of Rings	4	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	splash10-00mo-7594640000-f6eaffb3b87a7209c04d	2017-09-01	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (1 TMS) - 70eV, Positive	splash10-002f-6891604000-2d6996a185dcede1dcba	2017-10-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS ("GDP-4-Dehydro-6-deoxy-D-mannose,1TMS,#1" TMS) - 70eV, Positive	Not Available	2021-10-14	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_4) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_5) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_6) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_7) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_8) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_9) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_10) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_1) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_2) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_3) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_4) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_5) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_6) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_7) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_8) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_9) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_10) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_11) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_12) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_2_13) - 70eV, Positive	Not Available	2021-10-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-0udi-0910520000-fcbc13f148251be94ff4	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0udi-0910000000-ed550a57c125fee026ee	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-0udi-1900000000-a873b451fb06d591cb14	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0f79-3901480000-ab8899450fb110bccaf6	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-0udi-1901000000-c6a3e1a0d5247f947a8a	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-0pdl-3900000000-148e1fc1e5c7ae57395c	2015-09-15	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-000i-0000090000-45b44004cbf29fe6aa8f	2021-09-24	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-072c-7902450000-9b1901584b05fbc14f34	2021-09-24	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-05fr-2721910000-5a19390a8eaa546bc477	2021-09-24	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-0udi-0900030000-a9251fc5a1b28bbacc54	2021-09-24	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0udi-2911220000-4e86fd74cab914f8c823	2021-09-24	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-0zgr-9631000000-4a357d49912c73e87853	2021-09-24	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-16	View Spectrum

Biological Properties

Cellular Locations

Cytoplasm

Biospecimen Locations

Feces

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species
MMDBp0192052	GDP-mannose 4,6 dehydratase	Enzyme	O60547	Homo sapiens
MMDBp0192543	GDP-L-fucose synthase	Enzyme	Q13630	Homo sapiens

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Data Source	Reference
MMDBr0001281	GDP-4-Dehydro-6-deoxy-D-mannose	GDP-L-Fucose	Not Available	VMH; KEGG	30371894
MMDBr0002712	GDP-4-Dehydro-6-deoxy-D-mannose	GDP-L-Fucose	tissue specific transplantation antigen P35B	VMH	10410995 2428310 9603974
MMDBr0007452	Guanosine diphosphate mannose	GDP-4-Dehydro-6-deoxy-D-mannose	Not Available	VMH; KEGG	30371894

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Proteobacteria	74	Human feces; Human sputum; Human ; Human pleural fluid plaque; Human stool; Human feces; pleural fluid plaque; bal	Unknown; Metabolic reconstruction
Bacteria	Verrucomicrobia	1	Human ; Human feces	Metabolic reconstruction
Bacteria	Bacteroidetes	114	Human feces; Human ; Human stool; Human saliva; Human gastric fluid; Human urine; Human subgingival plaque	Metabolic reconstruction
Bacteria	Firmicutes	28	Human feces; Human stool	Metabolic reconstruction
Bacteria	Spirochaetes	1	Human feces	Metabolic reconstruction
Bacteria	Fusobacteria	3	Human feces	Metabolic reconstruction
Bacteria	Synergistetes	1	Human feces	Metabolic reconstruction
Bacteria	Actinobacteria	8	Human feces; Human	Metabolic reconstruction
Archaea	Euryarchaeota	1		Metabolic reconstruction

Exposure Sources

Source Type	Species	Data Source	Reference
Animal	Chondrus crispus	FooDB	Manually Annotated
Animal	Laminaria	FooDB	Manually Annotated
Animal	Haliotis	FooDB	Manually Annotated
Animal	Strombidae	FooDB	Manually Annotated
Animal	Clupea harengus harengus	FooDB	Manually Annotated
Animal	Undaria pinnatifida	FooDB	Manually Annotated
Animal	Peprilus triacanthus	FooDB	Manually Annotated
Animal	Rhodophyta	FooDB	Manually Annotated
Animal	Myoxocephalus	FooDB	Manually Annotated
Animal	Eucheuma	FooDB	Manually Annotated
Animal	Saccharina japonica	FooDB	Manually Annotated
Animal	Spirulina	FooDB	Manually Annotated
Animal	Lota lota	FooDB	Manually Annotated
Animal	Porphyra umbilicalis	FooDB	Manually Annotated
Plant	Brassica rapa var. perviridis	FooDB	Manually Annotated
Plant	Cucurbita pepo var. cylindrica	FooDB	Manually Annotated
Plant	Mentha aquatica	FooDB	Manually Annotated
Plant	Salvia elegans	FooDB	Manually Annotated
Plant	Mentha	FooDB	Manually Annotated
Plant	Sagittaria latifolia	FooDB	Manually Annotated
Plant	Solanum tuberosum	FooDB	Manually Annotated
Plant	Olea europaea	FooDB	Manually Annotated
Plant	Sambucus	FooDB	Manually Annotated
Plant	Pinus	FooDB	Manually Annotated
Plant	Psidium guajava	FooDB	Manually Annotated
Plant	Syzygium cumini	FooDB	Manually Annotated
Plant	Tilia tomentosa	FooDB	Manually Annotated
Plant	Typha angustifolia	FooDB	Manually Annotated
Plant	Daucus carota	FooDB	Manually Annotated
Plant	Empetrum nigrum	FooDB	Manually Annotated
Plant	Valerianella locusta	FooDB	Manually Annotated
Plant	Myrica rubra	FooDB	Manually Annotated
Plant	Vaccinium vitis-idaea	FooDB	Manually Annotated
Plant	Vaccinium angustifolium x vaccinium corymbosum	FooDB	Manually Annotated
Plant	Sisymbrium	FooDB	Manually Annotated
Plant	Vanilla	FooDB	Manually Annotated
Plant	Carya	FooDB	Manually Annotated
Plant	Brassica oleracea l. var. capitata l. f. alba dc.	FooDB	Manually Annotated
Plant	Physalis philadelphica var. immaculata	FooDB	Manually Annotated
Plant	Vigna radiata	FooDB	Manually Annotated
Plant	Borago officinalis	FooDB	Manually Annotated
Plant	Raphanus sativus	FooDB	Manually Annotated
Plant	Prunus dulcis	FooDB	Manually Annotated
Plant	Hyssopus officinalis	FooDB	Manually Annotated
Plant	Manihot esculenta	FooDB	Manually Annotated
Plant	Beta vulgaris ssp. cicla	FooDB	Manually Annotated
Plant	Scorzonera hispanica	FooDB	Manually Annotated
Plant	Vigna unguiculata ssp. sesquipedalis	FooDB	Manually Annotated
Plant	Angelica keiskei	FooDB	Manually Annotated
Plant	Ipomoea aquatica	FooDB	Manually Annotated
Plant	Musa x paradisiaca	FooDB	Manually Annotated
Plant	Cuminum cyminum	FooDB	Manually Annotated
Plant	Rubus spectabilis	FooDB	Manually Annotated
Plant	Allium sativum	FooDB	Manually Annotated
Plant	Arachis hypogaea	FooDB	Manually Annotated
Plant	Rubus idaeus	FooDB	Manually Annotated
Plant	Cantharellus cibarius	FooDB	Manually Annotated
Plant	Sinapis alba	FooDB	Manually Annotated
Plant	Fragaria x ananassa	FooDB	Manually Annotated
Plant	Pyrus communis	FooDB	Manually Annotated
Plant	Brassica ruvo	FooDB	Manually Annotated
Plant	Apium graveolens var. secalinum	FooDB	Manually Annotated
Plant	Morus nigra	FooDB	Manually Annotated
Plant	Solanum lycopersicum	FooDB	Manually Annotated
Plant	Abelmoschus esculentus	FooDB	Manually Annotated
Plant	Moringa oleifera	FooDB	Manually Annotated
Plant	Pinus edulis	FooDB	Manually Annotated
Plant	Passiflora edulis	FooDB	Manually Annotated
Plant	Opuntia macrorhiza	FooDB	Manually Annotated
Plant	Vigna angularis	FooDB	Manually Annotated
Plant	Manilkara zapota	FooDB	Manually Annotated
Plant	Cucurbita pepo var. clypeata	FooDB	Manually Annotated
Plant	Helianthus annuus	FooDB	Manually Annotated
Plant	Mentha spicata	FooDB	Manually Annotated
Plant	Corylus	FooDB	Manually Annotated
Plant	Malus	FooDB	Manually Annotated
Plant	Pisum sativum	FooDB	Manually Annotated
Plant	Sambucus nigra	FooDB	Manually Annotated
Plant	Allium cepa	FooDB	Manually Annotated
Plant	Juglans	FooDB	Manually Annotated
Plant	Mangifera indica	FooDB	Manually Annotated
Plant	Petroselinum crispum	FooDB	Manually Annotated
Plant	Ribes nigrum	FooDB	Manually Annotated
Plant	Zingiber officinale	FooDB	Manually Annotated
Plant	Chamaemelum nobile	FooDB	Manually Annotated
Plant	Illicium verum	FooDB	Manually Annotated
Plant		FooDB	Manually Annotated
Plant	Laurus nobilis	FooDB	Manually Annotated
Plant	Auricularia auricula-judae	FooDB	Manually Annotated
Plant	Attalea speciosa	FooDB	Manually Annotated
Plant	Juglans ailanthifolia	FooDB	Manually Annotated
Plant	Melissa officinalis	FooDB	Manually Annotated
Plant	Hippophae rhamnoides	FooDB	Manually Annotated
Plant	Polygonum alpinum	FooDB	Manually Annotated
Plant	Brassica juncea	FooDB	Manually Annotated
Plant	Pediomelum esculentum	FooDB	Manually Annotated
Plant	Spinacia oleracea	FooDB	Manually Annotated
Plant	Auricularia polytricha	FooDB	Manually Annotated
Plant	Camellia oleifera	FooDB	Manually Annotated
Plant	Vaccinium corymbosum	FooDB	Manually Annotated
Plant	Chrysanthemum coronarium	FooDB	Manually Annotated
Plant	Eleocharis dulcis	FooDB	Manually Annotated
Plant	Thymus vulgaris	FooDB	Manually Annotated
Plant	Actinidia chinensis	FooDB	Manually Annotated
Plant	Carica papaya	FooDB	Manually Annotated
Plant	Pimenta dioica	FooDB	Manually Annotated
Plant	Medicago sativa	FooDB	Manually Annotated
Plant	Vigna mungo	FooDB	Manually Annotated
Plant	Rubus arcticus	FooDB	Manually Annotated
Plant	Agaricus bisporus	FooDB	Manually Annotated
Plant	Cajanus cajan	FooDB	Manually Annotated
Plant	Rumex articus	FooDB	Manually Annotated
Plant	Origanum majorana	FooDB	Manually Annotated
Plant	Armoracia rusticana	FooDB	Manually Annotated
Plant	Hibiscus sabdariffa	FooDB	Manually Annotated
Plant	Benincasa hispida	FooDB	Manually Annotated
Plant	Prunus persica	FooDB	Manually Annotated
Plant	Canarium ovatum	FooDB	Manually Annotated
Plant	Ribes aureum var. villosum	FooDB	Manually Annotated
Plant	Cucurbita pepo var. cylindrica	FooDB	Manually Annotated
Plant	Brassica oleracea var. gemmifera	FooDB	Manually Annotated
Plant	Foeniculum vulgare	FooDB	Manually Annotated
Plant	Phoenix dactylifera	FooDB	Manually Annotated
Plant	Vaccinium macrocarpon	FooDB	Manually Annotated
Plant		FooDB	Manually Annotated
Plant	Arctium lappa	FooDB	Manually Annotated
Plant	Brassica oleracea var. gongylodes	FooDB	Manually Annotated
Plant	Juglans cinerea	FooDB	Manually Annotated
Plant	Prunus cerasus	FooDB	Manually Annotated
Plant	Eruca vesicaria ssp. sativa	FooDB	Manually Annotated
Plant	Rosmarinus officinalis	FooDB	Manually Annotated
Plant	Artocarpus altilis	FooDB	Manually Annotated
Plant	Citrus x paradisi	FooDB	Manually Annotated
Plant	Vigna unguiculata	FooDB	Manually Annotated
Plant	Cynara scolymus	FooDB	Manually Annotated
Plant	Cyathea	FooDB	Manually Annotated
Plant	Metroxylon sagu	FooDB	Manually Annotated
Plant	Vitis rotundifolia	FooDB	Manually Annotated
Plant	Brosimum alicastrum	FooDB	Manually Annotated
Plant	Ficus carica	FooDB	Manually Annotated
Plant	Lentinus edodes	FooDB	Manually Annotated
Plant	Psidium cattleianum	FooDB	Manually Annotated
Plant	Beta vulgaris var. rubra	FooDB	Manually Annotated
Plant	Castanea mollissima	FooDB	Manually Annotated
Plant	Lepidium sativum	FooDB	Manually Annotated
Plant	Morus	FooDB	Manually Annotated
Plant	Helianthus tuberosus	FooDB	Manually Annotated
Plant	Phytolacca americana	FooDB	Manually Annotated
Plant	Grifola frondosa	FooDB	Manually Annotated
Plant	Vitis labrusca	FooDB	Manually Annotated
Plant	Tetragonia tetragonioides	FooDB	Manually Annotated
Plant	Artemisia vulgaris	FooDB	Manually Annotated
Plant	Cucumis metuliferus	FooDB	Manually Annotated
Plant	Nephelium lappaceum	FooDB	Manually Annotated
Plant	Myrica	FooDB	Manually Annotated
Plant		FooDB	Manually Annotated
Plant	Corylus avellana	FooDB	Manually Annotated
Plant	Castanea crenata	FooDB	Manually Annotated
Plant	Litchi chinensis	FooDB	Manually Annotated
Plant	Juglans regia	FooDB	Manually Annotated
Plant	Quercus	FooDB	Manually Annotated
Plant	Trigonella foenum-graecum	FooDB	Manually Annotated
Plant	Vaccinium angustifolium	FooDB	Manually Annotated
Plant	Malpighia emarginata	FooDB	Manually Annotated
Plant	Physalis	FooDB	Manually Annotated
Plant	Brassica oleracea var. sabauda	FooDB	Manually Annotated
Plant	Thelesperma	FooDB	Manually Annotated
Plant	Brassica napus	FooDB	Manually Annotated
Plant	Asparagus officinalis	FooDB	Manually Annotated
Plant	Chamerion angustifolium	FooDB	Manually Annotated
Plant	Levisticum officinale	FooDB	Manually Annotated
Plant	Pimpinella anisum	FooDB	Manually Annotated
Plant	Vaccinium elliottii	FooDB	Manually Annotated
Plant	Artemisia dracunculus	FooDB	Manually Annotated
Plant	Matricaria recutita	FooDB	Manually Annotated
Plant	Citrus aurantiifolia	FooDB	Manually Annotated
Plant	Ziziphus zizyphus	FooDB	Manually Annotated
Plant	Lactuca sativa	FooDB	Manually Annotated
Plant	Dimocarpus longan	FooDB	Manually Annotated
Plant	Eragrostis tef	FooDB	Manually Annotated
Plant	Salvia hispanica	FooDB	Manually Annotated
Plant	Pistacia vera	FooDB	Manually Annotated
Plant	Cynara cardunculus	FooDB	Manually Annotated
Plant	Vitellaria paradoxa	FooDB	Manually Annotated
Plant	Pangium edule	FooDB	Manually Annotated
Plant	Malus pumila	FooDB	Manually Annotated
Plant	Allium	FooDB	Manually Annotated
Plant	Brassica oleracea var. viridis	FooDB	Manually Annotated
Plant	Punica granatum	FooDB	Manually Annotated
Plant	Agave	FooDB	Manually Annotated
Plant	Hedysarum alpinum	FooDB	Manually Annotated
Plant	Diospyros	FooDB	Manually Annotated
Plant		FooDB	Manually Annotated
Plant	Vigna aconitifolia	FooDB	Manually Annotated
Plant	Amaranthus	FooDB	Manually Annotated
Plant	Gossypium	FooDB	Manually Annotated
Plant	Beta vulgaris	FooDB	Manually Annotated
Plant	Mammea americana	FooDB	Manually Annotated
Plant	Brassica alboglabra	FooDB	Manually Annotated
Plant	Annona squamosa	FooDB	Manually Annotated
Plant	Apium graveolens var. dulce	FooDB	Manually Annotated
Plant	Vitis	FooDB	Manually Annotated
Plant	Xanthosoma sagittifolium	FooDB	Manually Annotated
Plant	Basella alba	FooDB	Manually Annotated
Plant	Cucumis sativus	FooDB	Manually Annotated
Plant	Citrus latifolia	FooDB	Manually Annotated
Plant	Carya illinoinensis	FooDB	Manually Annotated
Plant	Capsicum baccatum var. baccatum	FooDB	Manually Annotated
Plant	Byrsonima crassifolia	FooDB	Manually Annotated
Plant	Capsicum pubescens	FooDB	Manually Annotated
Plant	Cinnamomum aromaticum	FooDB	Manually Annotated
Plant	Ribes rubrum	FooDB	Manually Annotated
Plant	Crateva religiosa	FooDB	Manually Annotated
Plant		FooDB	Manually Annotated
Plant	Vitis aestivalis	FooDB	Manually Annotated
Plant	Brassica rapa var. chinensis	FooDB	Manually Annotated
Plant	Eugenia javanica	FooDB	Manually Annotated
Plant	Portulaca oleracea	FooDB	Manually Annotated
Plant	Ipomoea batatas	FooDB	Manually Annotated
Plant	Mentha arvensis	FooDB	Manually Annotated
Plant	Pastinaca sativa	FooDB	Manually Annotated
Plant	Cucurbita maxima	FooDB	Manually Annotated
Plant	Vaccinium stamineum	FooDB	Manually Annotated
Plant	Solanum lycopersicum var. cerasiforme	FooDB	Manually Annotated
Plant	Chenopodium album	FooDB	Manually Annotated
Plant	Psophocarpus tetragonolobus	FooDB	Manually Annotated
Plant	Allium ampeloprasum	FooDB	Manually Annotated
Plant	Brassica oleracea	FooDB	Manually Annotated
Plant	Sechium edule	FooDB	Manually Annotated
Plant	Lactuca sativa l. var. longifolia	FooDB	Manually Annotated
Plant	Grataegosorbus mitschurinii	FooDB	Manually Annotated
Plant	Diospyros virginiana	FooDB	Manually Annotated
Plant	Origanum x majoricum	FooDB	Manually Annotated
Plant	Rubus x loganobaccus	FooDB	Manually Annotated
Plant	Tragopogon porrifolius	FooDB	Manually Annotated
Plant	Taraxacum officinale	FooDB	Manually Annotated
Plant	Rumex	FooDB	Manually Annotated
Plant	Allium ascalonicum	FooDB	Manually Annotated
Plant	Curcuma longa	FooDB	Manually Annotated
Plant	Rubus chamaemorus	FooDB	Manually Annotated
Plant	Elettaria cardamomum	FooDB	Manually Annotated
Plant	Citrullus lanatus var. fistulosus	FooDB	Manually Annotated
Plant	Ananas comosus	FooDB	Manually Annotated
Plant	Persea americana	FooDB	Manually Annotated
Plant	Amelanchier alnifolia	FooDB	Manually Annotated
Plant	Eugenia uniflora	FooDB	Manually Annotated
Plant	Annona reticulata	FooDB	Manually Annotated
Plant	Cichorium intybus	FooDB	Manually Annotated
Plant	Sesbania bispinosa	FooDB	Manually Annotated
Plant	Chenopodium quinoa	FooDB	Manually Annotated
Plant	Brassica oleracea var. botrytis	FooDB	Manually Annotated
Plant	Ribes x nidigrolaria	FooDB	Manually Annotated
Plant	Garcinia mangostana	FooDB	Manually Annotated
Plant	Cucumis melo	FooDB	Manually Annotated
Plant	Dioscorea pentaphylla	FooDB	Manually Annotated
Plant	Corchorus olitorius	FooDB	Manually Annotated
Plant	Juglans nigra	FooDB	Manually Annotated
Plant	Lathyrus sativus	FooDB	Manually Annotated
Plant	Allium tuberosum	FooDB	Manually Annotated
Plant	Cinnamomum verum	FooDB	Manually Annotated
Plant	Glycine max	FooDB	Manually Annotated
Plant	Gaylussacia baccata	FooDB	Manually Annotated
Plant	Petasites japonicus	FooDB	Manually Annotated
Plant	Prunus tomentosa	FooDB	Manually Annotated
Plant	Ocimum basilicum	FooDB	Manually Annotated
Plant	Mentha x piperita	FooDB	Manually Annotated
Plant	Maranta arundinacea	FooDB	Manually Annotated
Plant	Matteuccia struthiopteris	FooDB	Manually Annotated
Plant	Cucurbita moschata	FooDB	Manually Annotated
Plant	Macadamia	FooDB	Manually Annotated
Plant	Tilia	FooDB	Manually Annotated
Plant	Citrus limon	FooDB	Manually Annotated
Plant	Vaccinium myrtilloides	FooDB	Manually Annotated
Plant	Capsicum annuum var. annuum	FooDB	Manually Annotated
Plant	Apium graveolens var. rapaceum	FooDB	Manually Annotated
Plant	Papaver	FooDB	Manually Annotated
Plant	Rosa	FooDB	Manually Annotated
Plant	Nelumbo	FooDB	Manually Annotated
Plant	Brassica oleracea var. conica	FooDB	Manually Annotated
Plant	Sesamum orientale	FooDB	Manually Annotated
Plant	Annona cherimola	FooDB	Manually Annotated
Plant	Brassica rapa var. pekinensis	FooDB	Manually Annotated
Plant	Brassica rapa	FooDB	Manually Annotated
Plant	Lippia graveolens	FooDB	Manually Annotated
Plant	Prunus	FooDB	Manually Annotated
Plant	Capparis spinosa	FooDB	Manually Annotated
Plant	Citrus sinensis	FooDB	Manually Annotated
Plant	Lens culinaris	FooDB	Manually Annotated
Plant	Vaccinium deliciosum	FooDB	Manually Annotated
Plant	Phaseolus lunatus	FooDB	Manually Annotated
Plant	Artocarpus heterophyllus	FooDB	Manually Annotated
Plant	Prunus virginiana	FooDB	Manually Annotated
Plant	Musa acuminata	FooDB	Manually Annotated
Plant	Citrullus lanatus	FooDB	Manually Annotated
Plant	Linum usitatissimum	FooDB	Manually Annotated
Plant	Vigna unguiculata ssp. unguiculata	FooDB	Manually Annotated
Plant	Macadamia tetraphylla	FooDB	Manually Annotated
Plant	Phyllostachys edulis	FooDB	Manually Annotated
Plant	Lagenaria siceraria	FooDB	Manually Annotated
Plant	Prunus domestica	FooDB	Manually Annotated
Plant	Prunus armeniaca	FooDB	Manually Annotated
Plant	Carum carvi	FooDB	Manually Annotated
Plant	Allium schoenoprasum	FooDB	Manually Annotated
Plant	Carissa macrocarpa	FooDB	Manually Annotated
Plant	Citrus reticulata	FooDB	Manually Annotated
Plant	Satureja hortensis	FooDB	Manually Annotated
Plant	Averrhoa carambola	FooDB	Manually Annotated
Plant	Brassica rapa var. rapa	FooDB	Manually Annotated
Plant	Sorbus aucuparia	FooDB	Manually Annotated
Plant	Anethum graveolens	FooDB	Manually Annotated
Plant	Nelumbo nucifera	FooDB	Manually Annotated
Plant	Coriandrum sativum	FooDB	Manually Annotated
Plant	Bertholletia excelsa	FooDB	Manually Annotated
Plant	Brassica oleracea var. costata	FooDB	Manually Annotated
Plant	Panax	FooDB	Manually Annotated
Plant	Ceratonia siliqua	FooDB	Manually Annotated
Plant	Cymbopogon citratus	FooDB	Manually Annotated
Plant	Luffa aegyptiaca	FooDB	Manually Annotated
Plant	Anacardium occidentale	FooDB	Manually Annotated
Plant	Carthamus tinctorius	FooDB	Manually Annotated
Plant	Rubus occidentalis	FooDB	Manually Annotated
Plant	Vigna umbellata	FooDB	Manually Annotated
Plant	Cicer arietinum	FooDB	Manually Annotated
Plant	Allium fistulosum	FooDB	Manually Annotated
Plant	Capsicum	FooDB	Manually Annotated
Plant	Vaccinium alaskaense	FooDB	Manually Annotated
Plant	Lupinus	FooDB	Manually Annotated
Plant	Tilia cordata	FooDB	Manually Annotated
Plant	Camellia sinensis	FooDB	Manually Annotated
Plant	Prunus persica var. nucipersica	FooDB	Manually Annotated
Plant	Durio zibethinus	FooDB	Manually Annotated
Plant	Eriobotrya japonica	FooDB	Manually Annotated
Plant	Solanum lycopersicum var. lycopersicum	FooDB	Manually Annotated
Plant	Brassica napus var. pabularia	FooDB	Manually Annotated
Plant	Oenothera biennis	FooDB	Manually Annotated
Plant	Diospyros kaki	FooDB	Manually Annotated
Plant	Ribes glandulosum	FooDB	Manually Annotated
Plant	Phaseolus vulgaris	FooDB	Manually Annotated
Plant	Virola surinamensis	FooDB	Manually Annotated
Plant	Verbena officinalis	FooDB	Manually Annotated
Plant	Theobroma cacao	FooDB	Manually Annotated
Plant	Daucus carota ssp. sativus	FooDB	Manually Annotated
Plant	Vaccinium oxycoccos	FooDB	Manually Annotated
Plant	Rumex acetosa	FooDB	Manually Annotated
Plant	Syzygium aromaticum	FooDB	Manually Annotated
Plant	Pyrus pyrifolia	FooDB	Manually Annotated
Plant	Vaccinium myrtillus	FooDB	Manually Annotated
Plant	Vaccinium parvifolium	FooDB	Manually Annotated
Plant	Aloysia triphylla	FooDB	Manually Annotated
Plant	Brassica oleracea var. capitata	FooDB	Manually Annotated
Plant	Capsicum chinense	FooDB	Manually Annotated
Plant	Vicia faba	FooDB	Manually Annotated
Plant	Vaccinium reticulatum	FooDB	Manually Annotated
Plant	Solanum quitoense	FooDB	Manually Annotated
Plant	Ginkgo biloba	FooDB	Manually Annotated
Plant	Theobroma grandiflorum	FooDB	Manually Annotated
Plant	Vigna unguiculata ssp. cylindrica	FooDB	Manually Annotated
Plant	Flammulina velutipes	FooDB	Manually Annotated
Plant	Satureja montana	FooDB	Manually Annotated
Plant		FooDB	Manually Annotated
Plant	Vitis vinifera	FooDB	Manually Annotated
Plant	Citrus japonica	FooDB	Manually Annotated
Plant	Prunus avium	FooDB	Manually Annotated
Plant	Perideridia oregana	FooDB	Manually Annotated
Plant	Vaccinium arboreum	FooDB	Manually Annotated
Plant	Pouteria sapota	FooDB	Manually Annotated
Plant	Wasabia japonica	FooDB	Manually Annotated
Plant	Piper nigrum	FooDB	Manually Annotated
Plant	Origanum onites	FooDB	Manually Annotated
Plant	Capsicum annuum	FooDB	Manually Annotated
Plant	Origanum vulgare	FooDB	Manually Annotated
Plant	Viburnum edule	FooDB	Manually Annotated
Plant	Dioscorea	FooDB	Manually Annotated
Plant	Brassica oleracea var. italica	FooDB	Manually Annotated
Plant	Momordica charantia	FooDB	Manually Annotated
Plant	Vaccinium uliginosum	FooDB	Manually Annotated
Plant	Castanea	FooDB	Manually Annotated
Plant	Rubus ursinus x idaeus	FooDB	Manually Annotated
Plant	Pleurotus ostreatus	FooDB	Manually Annotated
Plant	Cirsium	FooDB	Manually Annotated
Plant	Solanum melongena	FooDB	Manually Annotated
Plant	Opuntia	FooDB	Manually Annotated
Plant	Raphanus sativus var. sativus	FooDB	Manually Annotated
Plant	Colocasia esculenta	FooDB	Manually Annotated
Plant	Prunus persica var. persica	FooDB	Manually Annotated
Plant	Anthriscus cerefolium	FooDB	Manually Annotated
Plant	Nuphar lutea	FooDB	Manually Annotated
Plant	Lupinus albus	FooDB	Manually Annotated
Plant	Myristica fragrans	FooDB	Manually Annotated
Plant	Pachyrhizus erosus	FooDB	Manually Annotated
Plant	Cichorium endivia	FooDB	Manually Annotated
Plant	Apium graveolens	FooDB	Manually Annotated
Plant	Elaeis	FooDB	Manually Annotated
Plant	Cinnamomum	FooDB	Manually Annotated
Plant	Ribes uva-crispa	FooDB	Manually Annotated
Plant	Feijoa sellowiana	FooDB	Manually Annotated
Plant	Dysphania ambrosioides	FooDB	Manually Annotated
Plant	Raphanus sativus var. niger	FooDB	Manually Annotated
Plant	Photinia melanocarpa	FooDB	Manually Annotated
Plant	Salvia officinalis	FooDB	Manually Annotated
Plant	Rheum rhabarbarum	FooDB	Manually Annotated
Plant	Vaccinium	FooDB	Manually Annotated
Plant	Lablab purpureus	FooDB	Manually Annotated
Plant	Crocus sativus	FooDB	Manually Annotated
Plant	Citrus maxima	FooDB	Manually Annotated
Plant	Syzygium jambos	FooDB	Manually Annotated
Plant	Salix pulchra	FooDB	Manually Annotated
Plant	Castanea sativa	FooDB	Manually Annotated
Plant	Cydonia oblonga	FooDB	Manually Annotated
Plant	Annona muricata	FooDB	Manually Annotated
Plant	Fagus	FooDB	Manually Annotated
Plant	Cucurbita	FooDB	Manually Annotated
Plant	Opuntia cochenillifera	FooDB	Manually Annotated
Plant	Vaccinium ovatum	FooDB	Manually Annotated
Plant	Cocos nucifera	FooDB	Manually Annotated
Plant	Phaseolus coccineus	FooDB	Manually Annotated
Plant	Thymus pulegioides	FooDB	Manually Annotated
Plant	Tamarindus indica	FooDB	Manually Annotated
Plant	Mespilus germanica	FooDB	Manually Annotated

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified									HMDB

External Links

HMDB ID

HMDB0001346

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

KNApSAcK ID

Chemspider ID

KEGG Compound ID

BioCyc ID

GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE

BiGG ID

37116

Wikipedia Link

Not Available

METLIN ID

6180

PubChem Compound

439446

PDB ID

Not Available

ChEBI ID

16955

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Roos C, Kolmer M, Mattila P, Renkonen R: Composition of Drosophila melanogaster proteome involved in fucosylated glycan metabolism. J Biol Chem. 2002 Feb 1;277(5):3168-75. doi: 10.1074/jbc.M107927200. Epub 2001 Nov 6. [PubMed:11698403 ]

Showing metabocard for GDP-4-Dehydro-6-deoxy-D-mannose (MMDBc0029625)

MOL for #<Metabolite:0x00007fdb70c636c8>

3D MOL for #<Metabolite:0x00007fdb70c636c8>

3D SDF for #<Metabolite:0x00007fdb70c636c8>

3D-SDF for #<Metabolite:0x00007fdb70c636c8>

PDB for #<Metabolite:0x00007fdb70c636c8>

3D PDB for #<Metabolite:0x00007fdb70c636c8>

SMILES for #<Metabolite:0x00007fdb70c636c8>

INCHI for #<Metabolite:0x00007fdb70c636c8>

Structure for #<Metabolite:0x00007fdb70c636c8>

3D Structure for #<Metabolite:0x00007fdb70c636c8>