| MMDBm0137637 | Phlebia radiata | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0882080 | Phanerodontia chrysosporium | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0139794 | Trametes versicolor | Fungi | Basidiomycota | Human Feces | Not Available | RHEA |
| MMDBm0101463 | Pneumocystis carinii | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0121383 | Pleurotus eryngii | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0001818 | Methanocaldococcus jannaschii DSM 2661 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001838 | Methanopyrus kandleri AV19 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001955 | Picrophilus torridus DSM 9790 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0394038 | Prevotella stercorea DSM 18206 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0393942 | Prevotella conceptionensis 9403948 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000147 | Dorea formicigenerans ATCC 27755 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001489 | Corynebacterium aurimucosum ATCC 700975 | Bacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0779569 | Staphylococcus pettenkoferi VCU012 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0724473 | Slackia piriformis YIT 12062 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416223 | Fusobacterium nucleatum subsp. animalis 3_1_33 | Bacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000007 | Acinetobacter pittii ANC 4052 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000011 | Aggregatibacter aphrophilus NJ8700 | Bacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0801642 | [Eubacterium] cellulosolvens 6 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000288 | Vibrio mimicus MB-451 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0392248 | Bacteroides xylanisolvens SD CC 2a | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0501236 | Sutterella parvirubra YIT 11816 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000039 | Bacteroides clarus YIT 12056 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
