| MMDBm0139794 | Trametes versicolor | Fungi | Basidiomycota | Human Feces | Not Available | RHEA |
| MMDBm0101463 | Pneumocystis carinii | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0121383 | Pleurotus eryngii | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0137637 | Phlebia radiata | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0882080 | Phanerodontia chrysosporium | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0001818 | Methanocaldococcus jannaschii DSM 2661 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001838 | Methanopyrus kandleri AV19 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001955 | Picrophilus torridus DSM 9790 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0557387 | Tatumella ptyseos ATCC 33301 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0730698 | Bacillus sonorensis L12 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0491302 | Lautropia mirabilis ATCC 51599 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000025 | Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0790564 | Lactobacillus jensenii 1153 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416261 | Fusobacterium varium ATCC 27725 | Bacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0805490 | Faecalibacterium prausnitzii M21/2 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002593 | Streptococcus pyogenes MGAS10394 | Bacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001287 | Bifidobacterium animalis subsp. lactis AD011 | Bacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0767931 | Paenibacillus graminis RSA19 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0392293 | Bacteroides sp. 3_2_5 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0503672 | Neisseria flavescens SK114 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000095 | Bradyrhizobium elkanii USDA 76 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0558122 | Proteus penneri ATCC 35198 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
