| MMDBm0056938 | Verticillium dahliae VdLs.17 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0001678 | Haloquadratum walsbyi DSM 16790 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001926 | Natronomonas pharaonis DSM 2160 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001681 | Halorubrum lacusprofundi ATCC 49239 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001669 | Haloarcula marismortui ATCC 43049 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001672 | Halobacterium salinarum R1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001671 | Halobacterium sp. NRC-1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0766676 | Listeria monocytogenes serotype 4a str. L99 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0533123 | Atlantibacter hermannii NBRC 105704 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0572812 | Acinetobacter haemolyticus NIPH 261 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0610808 | Vibrio fluvialis I21563 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001602 | Escherichia coli BW2952 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001252 | Bacillus cereus ATCC 14579 | Bacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002521 | Shewanella sediminis HAW-EB3 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002418 | Psychromonas ingrahamii 37 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0533412 | Citrobacter amalonaticus Y19 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0392290 | Bacteroides sp. 3_1_23 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0764325 | Oceanobacillus picturae | Bacteria | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0881919 | Halococcus morrhuae DSM 1307 | Archaea | Euryarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0000513 | Actinomyces viscosus | Bacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0774633 | Mammaliicoccus vitulinus F1028 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001967 | Corynebacterium diphtheriae NCTC 13129 | Bacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0001883 | Mycobacterium avium subsp. paratuberculosis K-10 | Bacteria | Actinobacteria | Cattle | Not Available | RHEA |
| MMDBm0645903 | Actinomyces naeslundii str. Howell 279 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002046 | Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
