| MMDBm0001849 | Methanothermobacter thermautotrophicus str. Delta H | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001818 | Methanocaldococcus jannaschii DSM 2661 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001828 | Methanococcus aeolicus Nankai-3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001838 | Methanopyrus kandleri AV19 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001843 | Methanosarcina acetivorans C2A | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001844 | Methanosarcina mazei Go1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001845 | Methanosarcina barkeri str. Fusaro | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001825 | Methanococcus maripaludis S2 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001824 | Methanococcoides burtonii DSM 6242 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0792655 | Lactobacillus brevis subsp. gravesensis ATCC 27305 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001963 | Thermotoga maritima MSB8 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0001501 | Cronobacter sakazakii ATCC BAA-894 | Bacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0000079 | Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 | Bacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0002561 | Staphylococcus aureus subsp. aureus MW2 | Bacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001534 | Desulfitobacterium hafniense DCB-2 | Bacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001586 | Escherichia coli 536 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001052 | Clostridium saccharoperbutylacetonicum | Bacteria | Firmicutes | Not Available | Metabolic reconstruction | VMH |
| MMDBm0002531 | Shigella sonnei Ss046 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002444 | Rhodococcus erythropolis PR4 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001574 | Enterobacter asburiae LF7a | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0779599 | Staphylococcus warneri SG1 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0435884 | Methylobacterium mesophilicum SR1.6/6 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001067 | Klebsiella variicola | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001951 | Nocardioides sp. JS614 | Bacteria | Actinobacteria | Not Available | Not Available | RHEA |
| MMDBm0000105 | Citrobacter freundii ATCC 8090 = MTCC 1658 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
