| MMDBm0029026 | Aspergillus fumigatus Af293 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0064156 | Fusarium graminearum PH-1 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101463 | Pneumocystis carinii | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0082117 | Neurospora crassa OR74A | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0095324 | Candida albicans SC5314 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101467 | Pneumocystis carinii B80 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0138596 | Ganoderma lucidum | Fungi | Basidiomycota | Not Available | Not Available | RHEA |
| MMDBm0767931 | Paenibacillus graminis RSA19 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002553 | Spirosoma linguale DSM 74 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0786748 | Enterococcus casseliflavus ATCC 12755 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0730456 | Bacillus fordii DSM 16014 = CIP 108821 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0546994 | Kluyvera ascorbata ATCC 33433 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002403 | Pseudomonas putida F1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001529 | Delftia acidovorans SPH-1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0483496 | Burkholderia cepacia GG4 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0481922 | Alcaligenes faecalis subsp. faecalis NCIB 8687 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0580585 | Pseudomonas monteilii NBRC 103158 = DSM 14164 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0480821 | Achromobacter xylosoxidans NBRC 15126 = ATCC 27061 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002190 | Vibrio furnissii NCTC 11218 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0461764 | Roseomonas mucosa ATCC BAA-692 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000150 | Eggerthella lenta DSM 2243 | Bacteria | Actinobacteria | Human | Metabolic reconstruction | VMH |
| MMDBm0001858 | Methylobacterium radiotolerans JCM 2831 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
