| MMDBm0000015 | Akkermansia muciniphila ATCC BAA-835 | Bacteria | Verrucomicrobia | Human | Metabolic reconstruction | VMH |
| MMDBm0810479 | Peptoniphilus indolicus ATCC 29427 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810484 | Peptoniphilus lacrimalis DSM 7455 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810781 | Kallipyga massiliensis ph2 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810498 | Peptoniphilus timonensis JC401 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810309 | Anaerococcus vaginalis ATCC 51170 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0810478 | Peptoniphilus harei ACS-146-V-Sch2b | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001952 | Aeropyrum pernix K1 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002643 | Sulfolobus acidocaldarius DSM 639 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002641 | Sulfolobus solfataricus P2 | Archaea | Crenarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0002642 | Sulfolobus tokodaii str. 7 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001954 | Pyrobaculum aerophilum str. IM2 | Archaea | Crenarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002702 | Thermoplasma volcanium GSS1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001955 | Picrophilus torridus DSM 9790 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0881917 | Methanomassiliicoccus luminyensis B10 | Archaea | Euryarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0002701 | Thermoplasma acidophilum DSM 1728 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002424 | Pyrococcus horikoshii OT3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002423 | Pyrococcus abyssi GE5 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002425 | Pyrococcus furiosus DSM 3638 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002690 | Thermococcus kodakarensis KOD1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0000107 | Cloacibacillus evryensis DSM 19522 | Bacteria | Synergistetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0645329 | Pyramidobacter piscolens W5455 | Bacteria | Synergistetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0641709 | Brachyspira pilosicoli B2904 | Bacteria | Spirochaetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0074691 | Diaporthe amygdali | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
