MiMeDB: Showing metabocard for alpha-D-ribose 5-phosphate (MMDBc0033082)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-19 04:33:59 UTC

Update Date

2022-08-31 22:25:53 UTC

Metabolite ID

MMDBc0033082

Metabolite Identification

Common Name

alpha-D-ribose 5-phosphate

Description

D-Ribose 5-phosphate, also known as R-5-p, belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups. D-Ribose 5-phosphate is an extremely weak basic (essentially neutral) compound (based on its pKa). A D-Ribose 5-phosphate with an alpha-configuration at anomeric position. D-Ribose 5-phosphate exists in all eukaryotes, ranging from yeast to humans. Within humans, D-ribose 5-phosphate participates in a number of enzymatic reactions. In particular, D-ribose 5-phosphate can be biosynthesized from D-ribulose 5-phosphate; which is mediated by the enzyme ribose-5-phosphate isomerase. In addition, D-ribose 5-phosphate can be biosynthesized from D-ribose through the action of the enzyme ribokinase. In humans, D-ribose 5-phosphate is involved in the metabolic disorder called the ribose-5-phosphate isomerase deficiency pathway.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652309042000242D          

 14 14  0  0  0  0            999 V2000
10000.348810000.5677    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10001.063610000.1557    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
10001.776310000.5677    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
10001.366410001.2804    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
10002.493210000.1557    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
10002.190410001.2804    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9999.8423 9998.7095    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9998.0546 9998.7177    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9997.516710000.4111    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9998.965610000.6500    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
 9998.298210000.1650    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
 9998.5531 9999.3804    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
 9999.3781 9999.3804    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
 9999.633010000.1650    0.0000 C   0  0  1  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  2  0  0  0  0
  3  5  1  0  0  0  0
  3  6  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 10 11  1  0  0  0  0
 10 14  1  0  0  0  0
 14  1  1  6  0  0  0
 13  7  1  1  0  0  0
 12  8  1  1  0  0  0
 11  9  1  1  0  0  0
M  END
> <DATABASE_ID>
MMDBc0033082

> <DATABASE_NAME>
MIME

> <SMILES>
O[C@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O

> <INCHI_IDENTIFIER>
InChI=1S/C5H11O8P/c6-3-2(1-12-14(9,10)11)13-5(8)4(3)7/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4-,5+/m1/s1

> <INCHI_KEY>
KTVPXOYAKDPRHY-AIHAYLRMSA-N

> <FORMULA>
C5H11O8P

> <MOLECULAR_WEIGHT>
230.1098

> <EXACT_MASS>
230.01915384

> <JCHEM_ACCEPTOR_COUNT>
7

> <JCHEM_ATOM_COUNT>
25

> <JCHEM_AVERAGE_POLARIZABILITY>
18.250781635212405

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
5

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
{[(2R,3S,4R,5S)-3,4,5-trihydroxyoxolan-2-yl]methoxy}phosphonic acid

> <ALOGPS_LOGP>
-2.07

> <JCHEM_LOGP>
-2.425770307333333

> <ALOGPS_LOGS>
-0.84

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-2

> <JCHEM_PKA>
6.248502666590344

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.2226866612133929

> <JCHEM_PKA_STRONGEST_BASIC>
-3.680084519580305

> <JCHEM_POLAR_SURFACE_AREA>
136.68

> <JCHEM_REFRACTIVITY>
40.8338

> <JCHEM_ROTATABLE_BOND_COUNT>
3

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
3.36e+01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
α-D-ribose 5-phosphate

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 04-SEP-20   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   04-SEP-20         0                                  
HETATM    1  C   UNK     0    8667.3188667.726   0.000  0.00  0.00           C+0
HETATM    2  O   UNK     0    8668.6528666.957   0.000  0.00  0.00           O+0
HETATM    3  P   UNK     0    8669.9828667.726   0.000  0.00  0.00           P+0
HETATM    4  O   UNK     0    8669.2178669.057   0.000  0.00  0.00           O+0
HETATM    5  O   UNK     0    8671.3218666.957   0.000  0.00  0.00           O+0
HETATM    6  O   UNK     0    8670.7558669.057   0.000  0.00  0.00           O+0
HETATM    7  O   UNK     0    8666.3728664.258   0.000  0.00  0.00           O+0
HETATM    8  O   UNK     0    8663.0358664.273   0.000  0.00  0.00           O+0
HETATM    9  O   UNK     0    8662.0318667.434   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0    8664.7368667.880   0.000  0.00  0.00           O+0
HETATM   11  C   UNK     0    8663.4908666.975   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0    8663.9668665.510   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0    8665.5068665.510   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0    8665.9828666.975   0.000  0.00  0.00           C+0
CONECT    1    2   14                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4    5    6                                             
CONECT    4    3                                                            
CONECT    5    3                                                            
CONECT    6    3                                                            
CONECT    7   13                                                            
CONECT    8   12                                                            
CONECT    9   11                                                            
CONECT   10   11   14                                                       
CONECT   11   12   10    9                                                  
CONECT   12   11   13    8                                                  
CONECT   13   12   14    7                                                  
CONECT   14   13   10    1                                                  
MASTER        0    0    0    0    0    0    0    0   14    0   28    0
END

Synonyms

Value	Source
5-O-Phosphono-alpha-D-ribofuranose	ChEBI
alpha-D-Ribose 5-phosphate	ChEBI
5-O-Phosphono-a-D-ribofuranose	Generator
5-O-Phosphono-α-D-ribofuranose	Generator
a-D-Ribose 5-phosphate	Generator
a-D-Ribose 5-phosphoric acid	Generator
alpha-D-Ribose 5-phosphoric acid	Generator
Α-D-ribose 5-phosphate	Generator
Α-D-ribose 5-phosphoric acid	Generator
D-Ribose 5-phosphoric acid	Generator
D-Ribofuranose 5-phosphate	HMDB
R-5-p	HMDB
Ribose 5-(dihydrogen phosphate)	HMDB
Ribose 5-monophosphate	HMDB
Ribose 5-phosphate	HMDB
alpha-D-Ribose-5-phosphate	HMDB
Α-D-ribose-5-phosphate	HMDB
D-Ribose 5-phosphate	HMDB

Molecular Formula

C₅H₁₁O₈P

Average Mass

230.1098

Monoisotopic Mass

230.01915384

IUPAC Name

{[(2R,3S,4R,5S)-3,4,5-trihydroxyoxolan-2-yl]methoxy}phosphonic acid

Traditional Name

α-D-ribose 5-phosphate

CAS Registry Number

4300-28-1

SMILES

O[C@H]1O[C@H](COP(O)(O)=O)[C@@H](O)[C@H]1O

InChI Identifier

InChI=1S/C5H11O8P/c6-3-2(1-12-14(9,10)11)13-5(8)4(3)7/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4-,5+/m1/s1

InChI Key

KTVPXOYAKDPRHY-AIHAYLRMSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Pentose phosphates

Alternative Parents

Substituents

Pentose phosphate
Pentose-5-phosphate
Monosaccharide phosphate
Monoalkyl phosphate
Alkyl phosphate
Phosphoric acid ester
Organic phosphoric acid derivative
Tetrahydrofuran
1,2-diol
Secondary alcohol
Hemiacetal
Polyol
Oxacycle
Organoheterocyclic compound
Hydrocarbon derivative
Organic oxide
Alcohol
Aliphatic heteromonocyclic compound

Molecular Framework

Aliphatic heteromonocyclic compounds

External Descriptors

D-ribofuranose 5-phosphate (CHEBI:18189 )

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Property	Value	Source
Water Solubility	33.6 g/L	ALOGPS
logP	-2.1	ALOGPS
logP	-2.4	ChemAxon
logS	-0.84	ALOGPS
pKa (Strongest Acidic)	1.22	ChemAxon
pKa (Strongest Basic)	-3.7	ChemAxon
Physiological Charge	-2	ChemAxon
Hydrogen Acceptor Count	7	ChemAxon
Hydrogen Donor Count	5	ChemAxon
Polar Surface Area	136.68 Å²	ChemAxon
Rotatable Bond Count	3	ChemAxon
Refractivity	40.83 m³·mol⁻¹	ChemAxon
Polarizability	18.25 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
GC-MS	GC-MS Spectrum - GC-EI-TOF (Pegasus III TOF-MS system, Leco; GC 6890, Agilent Technologies) (5 TMS)	splash10-014j-1942000000-8c3468eabd202324a3ae	2020-03-06	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Pegasus III TOF-MS system, Leco; GC 6890, Agilent Technologies) (5 TMS)	splash10-0fr2-1943000000-b5d1468f33c224a23bd3	2020-03-06	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Pegasus III TOF-MS system, Leco; GC 6890, Agilent Technologies) (5 TMS; 1 MEOX)	splash10-00di-9532000000-693524b08b2ccd6179c5	2020-03-06	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Pegasus III TOF-MS system, Leco; GC 6890, Agilent Technologies) (5 TMS; 1 MEOX)	splash10-00di-9421000000-dbcd94d0a73f35716059	2020-03-06	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-014j-1942000000-8c3468eabd202324a3ae	2020-03-06	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-0fr2-1943000000-b5d1468f33c224a23bd3	2020-03-06	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-00di-9532000000-693524b08b2ccd6179c5	2020-03-06	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-00di-9421000000-dbcd94d0a73f35716059	2020-03-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	splash10-0002-9320000000-9b5fdcbd0e9ea3ece549	2016-09-22	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - Quattro_QQQ 10V, Positive (Annotated)	splash10-0002-9320000000-7f3d980d223a6b9f5f3f	2020-03-06	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - Quattro_QQQ 25V, Positive (Annotated)	splash10-0002-9000000000-a5df0614f5cbd8b55405	2020-03-06	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Negative	splash10-056r-0090700000-ea86961dacc666b5fc7d	2020-03-06	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Negative	splash10-0002-9100000000-6cbb3e84820a37a47fbb	2020-03-06	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Negative	splash10-004i-0090000000-10949588537786dbae1e	2020-03-06	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Negative	splash10-0a4i-0000900000-10d8b4fd09ed514cc12e	2020-03-06	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QTOF (UPLC Q-Tof Premier, Waters) , Negative	splash10-002b-9000000000-49264a7584727750bd70	2020-03-06	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT , negative	splash10-0002-9100000000-6cbb3e84820a37a47fbb	2020-03-06	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT , negative	splash10-004i-0090000000-10949588537786dbae1e	2020-03-06	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT , negative	splash10-0a4i-0000900000-10d8b4fd09ed514cc12e	2020-03-06	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QTOF , negative	splash10-002b-9000000000-340deaecb0169ce2acd3	2020-03-06	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-001i-1790000000-a3ced14cd6c2537c6d8f	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-001i-5940000000-8bcb763477232ce1dd2c	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-00y1-9300000000-ff5bd2489969fca00eb7	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-004i-7190000000-184075252146923d2684	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-004i-9000000000-917b1eb059131caa49ac	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-004i-9000000000-579393c266ea056c9e74	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-0159-1900000000-c7b876b70c54c880bdf3	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-01c1-9600000000-649e860a529bc7f5b4f8	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-053s-9000000000-f9d938955d2446665511	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-004j-9040000000-9ee7ba6767ffa3f356db	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-004i-9000000000-a5e502a2627af2048a1f	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-004i-9000000000-a5e502a2627af2048a1f	2021-09-22	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, experimental)		2020-03-06	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-16	View Spectrum
2D NMR	[¹H, ¹H]-TOCSY. Unexported temporarily by An Chi on Oct 15, 2021 until json or nmrML file is generated. 2D NMR Spectrum (experimental)		2020-03-06	View Spectrum
2D NMR	[¹H, ¹³C]-HSQC NMR Spectrum (2D, 600 MHz, H₂O, experimental)		2020-03-06	View Spectrum

Biological Properties

Cellular Locations

Cytoplasm
Mitochondria

Biospecimen Locations

Blood
Feces
Prostate
Urine

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species
MMDBp0192212	Ribose-phosphate pyrophosphokinase 3	Unknown	P21108	Homo sapiens
MMDBp0192269	ADP-sugar pyrophosphatase	Unknown	Q9UKK9	Homo sapiens
MMDBp0192270	Ribose-phosphate pyrophosphokinase 1	Unknown	P60891	Homo sapiens
MMDBp0192274	Ribose-phosphate pyrophosphokinase 2	Unknown	P11908	Homo sapiens
MMDBp0192280	ADP-ribose pyrophosphatase, mitochondrial	Unknown	Q9BW91	Homo sapiens
MMDBp0192420	Transketolase-like protein 1	Unknown	P51854	Homo sapiens
MMDBp0192425	Transketolase	Unknown	P29401	Homo sapiens
MMDBp0192694	Ribokinase	Enzyme	Q9H477	Homo sapiens
MMDBp0191639	Phosphoglucomutase-1	Enzyme	P36871	Escherichia coli
MMDBp0193141	Phosphoacetylglucosamine mutase	Unknown	O95394	Homo sapiens
MMDBp0193159	Ribose-5-phosphate isomerase	Enzyme	P49247	Homo sapiens
MMDBp0193368	Transient receptor potential cation channel subfamily M member 2	Unknown	O94759	Homo sapiens
MMDBp0193931	Phosphoglucomutase-2	Unknown	Q96G03	Homo sapiens
MMDBp0194056	Transketolase-like protein 2	Unknown	Q9H0I9	Homo sapiens
MMDBp0196256	Putative uncharacterized protein PRPS2	Enzyme	A6NMS2	Homo sapiens
MMDBp0196257	Ribose-phosphate pyrophosphokinase	Enzyme	Q53FW2	Homo sapiens
MMDBp0196679	Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase	Unknown	Q3LIE5

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0018463	D-Ribulose 5-phosphate	alpha-D-ribose 5-phosphate	Ribose-5-phosphate isomerase A	Isomerization	PathBank	31602464
MMDBr0018464	Xylulose 5-phosphate	D-Sedoheptulose 7-phosphate	Transketolase 1	Transfer of ketol group	PathBank	31602464
MMDBr0018502	Adenosine triphosphate	Hydrogen Ion	Ribose-phosphate pyrophosphokinase	Phosphorylation	PathBank	31602464
MMDBr0018503	alpha-D-ribose 5-phosphate	Ribose-1-phosphate	Phosphopentomutase	Transfers of a phosphate group; Isomerization; Intramolecular transfer of functional group	PathBank	31602464
MMDBr0019169	Ribose-1-phosphate	alpha-D-ribose 5-phosphate	Phosphopentomutase	Transfers of a phosphate group; Isomerization; Intramolecular transfer of functional group	PathBank	31602464
MMDBr0019331	Adenosine monophosphate	Adenine	AMP nucleosidase	Hydrolysis of a nucleotide	PathBank	31602464
MMDBr0019370	D-Ribose	Hydrogen Ion	Ribokinase	Phosphorylation	PathBank	31602464
MMDBr0019572	Adenosine triphosphate	Hydrogen Ion	Ribose-phosphate pyrophosphokinase 1	Phosphorylation	PathBank	31602464
MMDBr0019615	D-Ribulose 5-phosphate	alpha-D-ribose 5-phosphate	Ribose-5-phosphate isomerase	Isomerization	PathBank	31602464
MMDBr0019618	Xylulose 5-phosphate	D-Sedoheptulose 7-phosphate	Transketolase 1	Transfer of ketol group	PathBank	31602464
MMDBr0020054	D-Sedoheptulose 7-phosphate	Xylulose 5-phosphate	Transketolase 1	Transfer of ketol group	PathBank	31602464
MMDBr0020055	alpha-D-ribose 5-phosphate	D-Ribulose 5-phosphate	Ribose-5-phosphate isomerase	Isomerization	PathBank	31602464

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces; Human saliva	Unknown

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference

Host Biospecimen and Location

Host and Biospecimen	Status	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified	Children (6 - 18 years old)	Not Specified	Normal	HMDB	27609529
Human Urine	Detected but not Quantified	Adult (>18 years old)	Both	Normal	HMDB	32966057
Human Blood	Detected but not Quantified	Adult (>18 years old)	Both	Normal	HMDB	32966057
Human Prostate	Detected but not Quantified	Not Specified	Not Specified	Normal	HMDB	34986597

External Links

HMDB ID

HMDB0001548

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB001615

KNApSAcK ID

Not Available

Chemspider ID

389102

KEGG Compound ID

C03736

BioCyc ID

RIBOSE-5P

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

440101

PDB ID

Not Available

ChEBI ID

18189

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Sreekumar A, Poisson LM, Rajendiran TM, Khan AP, Cao Q, Yu J, Laxman B, Mehra R, Lonigro RJ, Li Y, Nyati MK, Ahsan A, Kalyana-Sundaram S, Han B, Cao X, Byun J, Omenn GS, Ghosh D, Pennathur S, Alexander DC, Berger A, Shuster JR, Wei JT, Varambally S, Beecher C, Chinnaiyan AM: Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression. Nature. 2009 Feb 12;457(7231):910-4. doi: 10.1038/nature07762. [PubMed:19212411 ]

Showing metabocard for alpha-D-ribose 5-phosphate (MMDBc0033082)

MOL for #<Metabolite:0x00007fa4e6d30c38>

3D MOL for #<Metabolite:0x00007fa4e6d30c38>

3D SDF for #<Metabolite:0x00007fa4e6d30c38>

3D-SDF for #<Metabolite:0x00007fa4e6d30c38>

PDB for #<Metabolite:0x00007fa4e6d30c38>

3D PDB for #<Metabolite:0x00007fa4e6d30c38>

SMILES for #<Metabolite:0x00007fa4e6d30c38>

INCHI for #<Metabolite:0x00007fa4e6d30c38>

Structure for #<Metabolite:0x00007fa4e6d30c38>

3D Structure for #<Metabolite:0x00007fa4e6d30c38>