MiMeDB: Showing metabocard for PC(20:4(8Z,11Z,14Z,17Z)/14:0) (MMDBc0034049)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-19 05:14:03 UTC

Update Date

2024-04-30 20:20:21 UTC

Metabolite ID

MMDBc0034049

Metabolite Identification

Common Name

PC(20:4(8Z,11Z,14Z,17Z)/14:0)

Description

PC(20:4(8Z,11Z,14Z,17Z)/14:0) is a phosphatidylcholine (PC or GPCho). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, glycerophosphocholines can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PC(20:4(8Z,11Z,14Z,17Z)/14:0), in particular, consists of one chain of eicsoatetraenoic acid at the C-1 position and one chain of myristic acid at the C-2 position. The eicsoatetraenoic acid moiety is derived from fish oils, while the myristic acid moiety is derived from nutmeg and butter. Phospholipids, are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling.‚Üµ‚ÜµWhile most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PCs can be synthesized via three different routes. In one route, choline is activated first by phosphorylation and then by coupling to CDP prior to attachment to phosphatidic acid. PCs can also synthesized by the addition of choline to CDP-activated 1,2-diacylglycerol. A third route to PC synthesis involves the conversion of either PS or PE to PC.

Structure

MOL SDF PDB SMILES InChI


  Mrv0541 02251200382D          

 53 52  0  0  1  0            999 V2000
   12.1836    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8980    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.6125    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.3270    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0414    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7559    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4704    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1849    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8993    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6138    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.3283    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.0427    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.7572    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.4717    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.4717    9.0967    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.1862    7.8592    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.9006    8.2717    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   23.6151    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.3296    8.2717    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.0440    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.0440    7.0342    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.7585    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.4730    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.1874    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.9019    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.6164    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.3309    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.0453    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.7598    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.4743    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.4743    9.0967    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.1887    9.5092    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.1887   10.3342    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.4743   10.7467    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.4743   11.5717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.7598   11.9842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.0453   11.5717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.3309   11.9842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.6164   11.5717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.6164   10.7467    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.9006    9.0967    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.6151    9.5092    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.6151   10.3342    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   22.7901   10.3342    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   24.4401   10.3342    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.6151   11.1592    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.3296   11.5717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.3296   12.3967    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.0440   12.8092    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   25.4565   12.0947    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.6315   13.5237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.7585   13.2217    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.9006    7.4467    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 17 16  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 28 27  1  4  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 31 30  1  4  0  0  0
 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 34 33  1  4  0  0  0
 34 35  2  0  0  0  0
 35 36  1  0  0  0  0
 37 36  1  4  0  0  0
 37 38  2  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 17 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 43 45  2  0  0  0  0
 43 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 49 51  1  0  0  0  0
 49 52  1  0  0  0  0
 17 53  1  6  0  0  0
M  CHG  2  44  -1  49   1
M  END


  Mrv0541 02251200382D          

 53 52  0  0  1  0            999 V2000
   12.1836    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.8980    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.6125    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.3270    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.0414    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.7559    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.4704    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.1849    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   17.8993    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   18.6138    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   19.3283    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.0427    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   20.7572    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.4717    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   21.4717    9.0967    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.1862    7.8592    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   22.9006    8.2717    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
   23.6151    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.3296    8.2717    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.0440    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.0440    7.0342    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   25.7585    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   26.4730    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.1874    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   27.9019    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.6164    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.3309    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.0453    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.7598    7.8592    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.4743    8.2717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.4743    9.0967    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.1887    9.5092    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   32.1887   10.3342    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.4743   10.7467    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   31.4743   11.5717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.7598   11.9842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   30.0453   11.5717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   29.3309   11.9842    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.6164   11.5717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   28.6164   10.7467    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.9006    9.0967    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   23.6151    9.5092    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.6151   10.3342    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
   22.7901   10.3342    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
   24.4401   10.3342    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   23.6151   11.1592    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   24.3296   11.5717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.3296   12.3967    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.0440   12.8092    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
   25.4565   12.0947    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   24.6315   13.5237    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   25.7585   13.2217    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   22.9006    7.4467    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  2  0  0  0  0
 14 16  1  0  0  0  0
 17 16  1  1  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  2  0  0  0  0
 20 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 28 27  1  4  0  0  0
 28 29  2  0  0  0  0
 29 30  1  0  0  0  0
 31 30  1  4  0  0  0
 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 34 33  1  4  0  0  0
 34 35  2  0  0  0  0
 35 36  1  0  0  0  0
 37 36  1  4  0  0  0
 37 38  2  0  0  0  0
 38 39  1  0  0  0  0
 39 40  1  0  0  0  0
 17 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 43 45  2  0  0  0  0
 43 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 49 50  1  0  0  0  0
 49 51  1  0  0  0  0
 49 52  1  0  0  0  0
 17 53  1  6  0  0  0
M  CHG  2  44  -1  49   1
M  END
> <DATABASE_ID>
MMDBc0034049

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@](COC(=O)CCCCCCC=CCC=CCC=CCC=CCC)(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCCCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C42H76NO8P/c1-6-8-10-12-14-16-18-19-20-21-22-23-25-26-28-30-32-34-41(44)48-38-40(39-50-52(46,47)49-37-36-43(3,4)5)51-42(45)35-33-31-29-27-24-17-15-13-11-9-7-2/h8,10,14,16,19-20,22-23,40H,6-7,9,11-13,15,17-18,21,24-39H2,1-5H3/t40-/m1/s1

> <INCHI_KEY>
ZSYMQFVRTIVMFA-RRHRGVEJSA-N

> <FORMULA>
C42H76NO8P

> <MOLECULAR_WEIGHT>
754.0285

> <EXACT_MASS>
753.530854925

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
90.08632243906996

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[(2R)-3-(icosa-8,11,14,17-tetraenoyloxy)-2-(tetradecanoyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium

> <ALOGPS_LOGP>
5.32

> <JCHEM_LOGP>
7.555247082528254

> <ALOGPS_LOGS>
-7.40

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8550572064469137

> <JCHEM_PKA_STRONGEST_BASIC>
-6.744159309193598

> <JCHEM_POLAR_SURFACE_AREA>
111.19000000000001

> <JCHEM_REFRACTIVITY>
229.53349999999998

> <JCHEM_ROTATABLE_BOND_COUNT>
38

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.22e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2-{[(2R)-3-(icosa-8,11,14,17-tetraenoyloxy)-2-(tetradecanoyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-FEB-12         0                                  
HETATM    1  C   UNK     0      22.743  14.671   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      24.076  15.441   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      25.410  14.671   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      26.744  15.441   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      28.077  14.671   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      29.411  15.441   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      30.745  14.671   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      32.078  15.441   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      33.412  14.671   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      34.746  15.441   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      36.079  14.671   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      37.413  15.441   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      38.747  14.671   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      40.081  15.441   0.000  0.00  0.00           C+0
HETATM   15  O   UNK     0      40.081  16.981   0.000  0.00  0.00           O+0
HETATM   16  O   UNK     0      41.414  14.671   0.000  0.00  0.00           O+0
HETATM   17  C   UNK     0      42.748  15.441   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      44.082  14.671   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0      45.415  15.441   0.000  0.00  0.00           O+0
HETATM   20  C   UNK     0      46.749  14.671   0.000  0.00  0.00           C+0
HETATM   21  O   UNK     0      46.749  13.131   0.000  0.00  0.00           O+0
HETATM   22  C   UNK     0      48.083  15.441   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      49.416  14.671   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      50.750  15.441   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      52.084  14.671   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      53.417  15.441   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      54.751  14.671   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      56.085  15.441   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      57.418  14.671   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      58.752  15.441   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      58.752  16.981   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      60.086  17.751   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      60.086  19.291   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      58.752  20.061   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      58.752  21.601   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      57.418  22.371   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      56.085  21.601   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      54.751  22.371   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      53.417  21.601   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      53.417  20.061   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      42.748  16.981   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      44.082  17.751   0.000  0.00  0.00           O+0
HETATM   43  P   UNK     0      44.082  19.291   0.000  0.00  0.00           P+0
HETATM   44  O   UNK     0      42.542  19.291   0.000  0.00  0.00           O-1
HETATM   45  O   UNK     0      45.622  19.291   0.000  0.00  0.00           O+0
HETATM   46  O   UNK     0      44.082  20.831   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0      45.415  21.601   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      45.415  23.141   0.000  0.00  0.00           C+0
HETATM   49  N   UNK     0      46.749  23.911   0.000  0.00  0.00           N+1
HETATM   50  C   UNK     0      47.519  22.577   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      45.979  25.244   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      48.083  24.681   0.000  0.00  0.00           C+0
HETATM   53  H   UNK     0      42.748  13.901   0.000  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   16                                                  
CONECT   15   14                                                            
CONECT   16   14   17                                                       
CONECT   17   16   18   41   53                                             
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   22                                                  
CONECT   21   20                                                            
CONECT   22   20   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39                                                            
CONECT   41   17   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44   45   46                                             
CONECT   44   43                                                            
CONECT   45   43                                                            
CONECT   46   43   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50   51   52                                             
CONECT   50   49                                                            
CONECT   51   49                                                            
CONECT   52   49                                                            
CONECT   53   17                                                            
MASTER        0    0    0    0    0    0    0    0   53    0  104    0
END

Synonyms

Not Available

Molecular Formula

C₄₂H₇₆NO₈P

Average Mass

754.0285

Monoisotopic Mass

753.530854925

IUPAC Name

(2-{[(2R)-3-(icosa-8,11,14,17-tetraenoyloxy)-2-(tetradecanoyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium

Traditional Name

(2-{[(2R)-3-(icosa-8,11,14,17-tetraenoyloxy)-2-(tetradecanoyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium

CAS Registry Number

Not Available

SMILES

[H][C@@](COC(=O)CCCCCCC=CCC=CCC=CCC=CCC)(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCCCCCCC

InChI Identifier

InChI=1S/C42H76NO8P/c1-6-8-10-12-14-16-18-19-20-21-22-23-25-26-28-30-32-34-41(44)48-38-40(39-50-52(46,47)49-37-36-43(3,4)5)51-42(45)35-33-31-29-27-24-17-15-13-11-9-7-2/h8,10,14,16,19-20,22-23,40H,6-7,9,11-13,15,17-18,21,24-39H2,1-5H3/t40-/m1/s1

InChI Key

ZSYMQFVRTIVMFA-RRHRGVEJSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phosphatidylcholines. These are glycerophosphocholines in which the two free -OH are attached to one fatty acid each through an ester linkage.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

Glycerophosphocholines

Direct Parent

Phosphatidylcholines

Alternative Parents

Substituents

Diacylglycero-3-phosphocholine
Phosphocholine
Fatty acid ester
Dialkyl phosphate
Dicarboxylic acid or derivatives
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Fatty acyl
Quaternary ammonium salt
Tetraalkylammonium salt
Carboxylic acid ester
Carboxylic acid derivative
Organic oxygen compound
Organic nitrogen compound
Carbonyl group
Organooxygen compound
Organonitrogen compound
Organic oxide
Organopnictogen compound
Amine
Organic salt
Hydrocarbon derivative
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Property	Value	Source
Water Solubility	3.2e-05 g/L	ALOGPS
logP	5.32	ALOGPS
logP	7.56	ChemAxon
logS	-7.4	ALOGPS
pKa (Strongest Acidic)	1.86	ChemAxon
pKa (Strongest Basic)	-6.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	111.19 Å²	ChemAxon
Rotatable Bond Count	38	ChemAxon
Refractivity	229.53 m³·mol⁻¹	ChemAxon
Polarizability	90.09 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Not Available

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

All Tissues
Blood
Feces
Urine

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference
Obesity	Decreased	Association	Human Urine	HMDB	26910390
Obesity		Association	Human Blood	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children
Obesity		Association	Human Blood	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces; Human saliva	Unknown

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference
Animal	Milk	Bos taurus	FooDB	31437929
Animal	Milk	Bos taurus	FooDB	31437929

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Urine	Detected and Quantified	0.34	0.02			umol/mmol creatinine	Adolescent (13-18 years old)	Both	Obese	HMDB	26910390
Human Blood	Detected and Quantified	2.9268	1.229			uM	Adult (>18 years old)	Female	Pregnancy	HMDB	24704061
Human Urine	Detected and Quantified	0.0023		0.0002	0.018	umol/mmol creatinine	Adult (>18 years old)	Both	Normal	HMDB	24023812
Human Feces	Detected and Quantified	0.02	0.01			nmol/g wet feces	Adult (>18 years old)	Both	Normal	HMDB	27624970
Human Feces	Detected and Quantified	0.05	0.1			nmol/g wet feces	Adult (>18 years old)	Both	Normal	HMDB	27624970
Human Blood	Detected and Quantified	0.52		0.43	0.62	uM	Newborn (0-30 days old)		Normal	HMDB	25754623
Human Urine	Detected and Quantified	0.66	0.15			umol/mmol creatinine	Adolescent (13-18 years old)	Both	Normal	HMDB	26910390
Human Blood	Detected and Quantified	0.82		0.63	1.14	uM	Infant (0-1 year old)		Normal	HMDB	25754623
Human Blood	Detected and Quantified	1.87	0.66			uM	Adult (>18 years old)	Both	Normal	HMDB	28278231
Human Blood	Detected and Quantified	2.76	1.13			uM	Adult (>18 years old)	Both	Normal	HMDB	26010610
Human Blood	Detected and Quantified	1.40	0.61			uM	Children (1-13 years old)	Both	Obesity	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children
Human Blood	Detected and Quantified	1.74	0.59			uM	Children (1-13 years old)	Both	Obesity	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children
Human All tissues	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	34986597

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB025649

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Ramirez-Gaona M, Marcu A, Pon A, Guo AC, Sajed T, Wishart NA, Karu N, Djoumbou Feunang Y, Arndt D, Wishart DS: YMDB 2.0: a significantly expanded version of the yeast metabolome database. Nucleic Acids Res. 2017 Jan 4;45(D1):D440-D445. doi: 10.1093/nar/gkw1058. Epub 2016 Nov 28. [PubMed:27899612 ]

Showing metabocard for PC(20:4(8Z,11Z,14Z,17Z)/14:0) (MMDBc0034049)

MOL for #<Metabolite:0x00005634c0d6d940>

3D MOL for #<Metabolite:0x00005634c0d6d940>

3D SDF for #<Metabolite:0x00005634c0d6d940>

3D-SDF for #<Metabolite:0x00005634c0d6d940>

PDB for #<Metabolite:0x00005634c0d6d940>

3D PDB for #<Metabolite:0x00005634c0d6d940>

SMILES for #<Metabolite:0x00005634c0d6d940>

INCHI for #<Metabolite:0x00005634c0d6d940>

Structure for #<Metabolite:0x00005634c0d6d940>

3D Structure for #<Metabolite:0x00005634c0d6d940>