MiMeDB: Showing metabocard for PC(20:5(5Z,8Z,11Z,14Z,17Z)/18:1(9Z)) (MMDBc0034059)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2021-11-19 05:14:26 UTC

Update Date

2024-04-30 20:20:30 UTC

Metabolite ID

MMDBc0034059

Metabolite Identification

Common Name

PC(20:5(5Z,8Z,11Z,14Z,17Z)/18:1(9Z))

Description

PC(20:5(5Z,8Z,11Z,14Z,17Z)/18:1(9Z)) is a phosphatidylcholine (PC or GPCho). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, glycerophosphocholines can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PC(20:5(5Z,8Z,11Z,14Z,17Z)/18:1(9Z)), in particular, consists of one chain of eicosapentaenoic acid at the C-1 position and one chain of oleic acid at the C-2 position. The eicosapentaenoic acid moiety is derived from fish oils, liver and kidney, while the oleic acid moiety is derived from vegetable oils, especially olive and canola oil. Phospholipids, are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling.‚Üµ‚ÜµWhile most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PCs can be synthesized via three different routes. In one route, choline is activated first by phosphorylation and then by coupling to CDP prior to attachment to phosphatidic acid. PCs can also synthesized by the addition of choline to CDP-activated 1,2-diacylglycerol. A third route to PC synthesis involves the conversion of either PS or PE to PC.

Structure

MOL SDF PDB SMILES InChI


  Mrv0541 02251200452D          

 57 56  0  0  1  0            999 V2000
   -5.9148    1.0293    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1353    1.2994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9793    2.1095    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1998    2.3796    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0439    3.1897    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2643    3.4597    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1084    4.2699    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3289    4.5399    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1730    5.3501    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3934    5.6201    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2375    6.4302    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4579    6.7003    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3020    7.5104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4775    7.7805    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6334    8.5906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4130    8.8606    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5689    9.6708    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3484    9.9408    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9721    9.4007    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5043   10.7510    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2839   11.0210    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4398   11.8311    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2194   12.1012    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3753   12.9113    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7516   13.4514    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1548   13.1814    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3107   13.9915    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0903   14.2615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2462   15.0717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0257   15.3417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1817   16.1518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5580   16.6919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7139   17.5021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0903   18.0422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3107   17.7721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6871   18.3122    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9075   18.0422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7516   17.2320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9721   16.9620    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8162   16.1518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4398   15.6118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2839   14.8016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9075   14.2615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6871   14.5316    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9075   10.4809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7516    9.6708    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3753    9.1307    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    4.9154    9.7543    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    3.8352    8.5070    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9989    8.5906    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8430    7.7805    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4666    7.2404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3107    6.4302    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    4.5006    6.5861    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1209    6.2743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1548    5.6201    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6603   11.5611    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  9  8  1  4  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 21 20  1  6  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 29 28  1  4  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 32 31  1  4  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 35 34  1  4  0  0  0
 35 36  2  0  0  0  0
 36 37  1  0  0  0  0
 38 37  1  4  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 41 40  1  4  0  0  0
 41 42  2  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 21 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 47 49  2  0  0  0  0
 47 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 53 55  1  0  0  0  0
 53 56  1  0  0  0  0
 21 57  1  1  0  0  0
M  CHG  2  48  -1  53   1
M  END


  Mrv0541 02251200452D          

 57 56  0  0  1  0            999 V2000
   -5.9148    1.0293    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1353    1.2994    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9793    2.1095    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1998    2.3796    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.0439    3.1897    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2643    3.4597    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1084    4.2699    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3289    4.5399    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1730    5.3501    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3934    5.6201    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2375    6.4302    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4579    6.7003    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.3020    7.5104    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4775    7.7805    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6334    8.5906    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4130    8.8606    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5689    9.6708    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.3484    9.9408    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9721    9.4007    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5043   10.7510    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.2839   11.0210    0.0000 C   0  0  2  0  0  0  0  0  0  0  0  0
    3.4398   11.8311    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2194   12.1012    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3753   12.9113    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7516   13.4514    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.1548   13.1814    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3107   13.9915    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0903   14.2615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.2462   15.0717    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0257   15.3417    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1817   16.1518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5580   16.6919    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.7139   17.5021    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0903   18.0422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3107   17.7721    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6871   18.3122    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9075   18.0422    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7516   17.2320    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9721   16.9620    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8162   16.1518    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4398   15.6118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2839   14.8016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9075   14.2615    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6871   14.5316    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9075   10.4809    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.7516    9.6708    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.3753    9.1307    0.0000 P   0  0  0  0  0  0  0  0  0  0  0  0
    4.9154    9.7543    0.0000 O   0  5  0  0  0  0  0  0  0  0  0  0
    3.8352    8.5070    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.9989    8.5906    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.8430    7.7805    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.4666    7.2404    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3107    6.4302    0.0000 N   0  3  0  0  0  0  0  0  0  0  0  0
    4.5006    6.5861    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1209    6.2743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1548    5.6201    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6603   11.5611    0.0000 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  1  0  0  0  0
  9  8  1  4  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  1  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  2  0  0  0  0
 18 20  1  0  0  0  0
 21 20  1  6  0  0  0
 21 22  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 24 25  2  0  0  0  0
 24 26  1  0  0  0  0
 26 27  1  0  0  0  0
 27 28  1  0  0  0  0
 29 28  1  4  0  0  0
 29 30  2  0  0  0  0
 30 31  1  0  0  0  0
 32 31  1  4  0  0  0
 32 33  2  0  0  0  0
 33 34  1  0  0  0  0
 35 34  1  4  0  0  0
 35 36  2  0  0  0  0
 36 37  1  0  0  0  0
 38 37  1  4  0  0  0
 38 39  2  0  0  0  0
 39 40  1  0  0  0  0
 41 40  1  4  0  0  0
 41 42  2  0  0  0  0
 42 43  1  0  0  0  0
 43 44  1  0  0  0  0
 21 45  1  0  0  0  0
 45 46  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 47 49  2  0  0  0  0
 47 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 53 54  1  0  0  0  0
 53 55  1  0  0  0  0
 53 56  1  0  0  0  0
 21 57  1  1  0  0  0
M  CHG  2  48  -1  53   1
M  END
> <DATABASE_ID>
MMDBc0034059

> <DATABASE_NAME>
MIME

> <SMILES>
[H][C@@](COC(=O)CCCC=CCC=CCC=CCC=CCC=CCC)(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCC=CCCCCCCCC

> <INCHI_IDENTIFIER>
InChI=1S/C46H80NO8P/c1-6-8-10-12-14-16-18-20-22-23-25-26-28-30-32-34-36-38-45(48)52-42-44(43-54-56(50,51)53-41-40-47(3,4)5)55-46(49)39-37-35-33-31-29-27-24-21-19-17-15-13-11-9-7-2/h8,10,14,16,20-22,24-26,30,32,44H,6-7,9,11-13,15,17-19,23,27-29,31,33-43H2,1-5H3/t44-/m1/s1

> <INCHI_KEY>
JZKMYCPNBSRARO-USYZEHPZSA-N

> <FORMULA>
C46H80NO8P

> <MOLECULAR_WEIGHT>
806.1031

> <EXACT_MASS>
805.562155053

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
95.94752925629867

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(2-{[(2R)-3-(icosa-5,8,11,14,17-pentaenoyloxy)-2-(octadec-9-enoyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium

> <ALOGPS_LOGP>
5.75

> <JCHEM_LOGP>
8.609678429194922

> <ALOGPS_LOGS>
-7.44

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8550572064467632

> <JCHEM_PKA_STRONGEST_BASIC>
-6.744219009617128

> <JCHEM_POLAR_SURFACE_AREA>
111.19000000000001

> <JCHEM_REFRACTIVITY>
250.1707

> <JCHEM_ROTATABLE_BOND_COUNT>
40

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.09e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
(2-{[(2R)-3-(icosa-5,8,11,14,17-pentaenoyloxy)-2-(octadec-9-enoyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium

> <JCHEM_VEBER_RULE>
0

$$$$

HEADER    PROTEIN                                 25-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-FEB-12         0                                  
HETATM    1  C   UNK     0     -11.041   1.921   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -9.586   2.426   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -9.295   3.938   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -7.840   4.442   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -7.549   5.954   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      -6.093   6.458   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -5.802   7.970   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      -4.347   8.474   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      -4.056   9.987   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      -2.601  10.491   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -2.310  12.003   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -0.855  12.507   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -0.564  14.019   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.891  14.524   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       1.182  16.036   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       2.638  16.540   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       2.929  18.052   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       4.384  18.556   0.000  0.00  0.00           C+0
HETATM   19  O   UNK     0       5.548  17.548   0.000  0.00  0.00           O+0
HETATM   20  O   UNK     0       4.675  20.069   0.000  0.00  0.00           O+0
HETATM   21  C   UNK     0       6.130  20.573   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       6.421  22.085   0.000  0.00  0.00           C+0
HETATM   23  O   UNK     0       7.876  22.589   0.000  0.00  0.00           O+0
HETATM   24  C   UNK     0       8.167  24.101   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0       7.003  25.109   0.000  0.00  0.00           O+0
HETATM   26  C   UNK     0       9.622  24.605   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0       9.913  26.117   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      11.369  26.621   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      11.660  28.134   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0      13.115  28.638   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      13.406  30.150   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0      12.242  31.158   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      12.533  32.671   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      11.369  33.679   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0       9.913  33.175   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       8.749  34.183   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       7.294  33.679   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       7.003  32.166   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       5.548  31.662   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       5.257  30.150   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       6.421  29.142   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0       6.130  27.630   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       7.294  26.621   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       8.749  27.126   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       7.294  19.564   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0       7.003  18.052   0.000  0.00  0.00           O+0
HETATM   47  P   UNK     0       8.167  17.044   0.000  0.00  0.00           P+0
HETATM   48  O   UNK     0       9.175  18.208   0.000  0.00  0.00           O-1
HETATM   49  O   UNK     0       7.159  15.880   0.000  0.00  0.00           O+0
HETATM   50  O   UNK     0       9.331  16.036   0.000  0.00  0.00           O+0
HETATM   51  C   UNK     0       9.040  14.524   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      10.204  13.515   0.000  0.00  0.00           C+0
HETATM   53  N   UNK     0       9.913  12.003   0.000  0.00  0.00           N+1
HETATM   54  C   UNK     0       8.401  12.294   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      11.426  11.712   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0       9.622  10.491   0.000  0.00  0.00           C+0
HETATM   57  H   UNK     0       4.966  21.581   0.000  0.00  0.00           H+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   20                                                  
CONECT   19   18                                                            
CONECT   20   18   21                                                       
CONECT   21   20   22   45   57                                             
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29                                                       
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33                                                       
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38                                                       
CONECT   38   37   39                                                       
CONECT   39   38   40                                                       
CONECT   40   39   41                                                       
CONECT   41   40   42                                                       
CONECT   42   41   43                                                       
CONECT   43   42   44                                                       
CONECT   44   43                                                            
CONECT   45   21   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48   49   50                                             
CONECT   48   47                                                            
CONECT   49   47                                                            
CONECT   50   47   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54   55   56                                             
CONECT   54   53                                                            
CONECT   55   53                                                            
CONECT   56   53                                                            
CONECT   57   21                                                            
MASTER        0    0    0    0    0    0    0    0   57    0  112    0
END

Synonyms

Not Available

Molecular Formula

C₄₆H₈₀NO₈P

Average Mass

806.1031

Monoisotopic Mass

805.562155053

IUPAC Name

(2-{[(2R)-3-(icosa-5,8,11,14,17-pentaenoyloxy)-2-(octadec-9-enoyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium

Traditional Name

(2-{[(2R)-3-(icosa-5,8,11,14,17-pentaenoyloxy)-2-(octadec-9-enoyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium

CAS Registry Number

Not Available

SMILES

[H][C@@](COC(=O)CCCC=CCC=CCC=CCC=CCC=CCC)(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCC=CCCCCCCCC

InChI Identifier

InChI=1S/C46H80NO8P/c1-6-8-10-12-14-16-18-20-22-23-25-26-28-30-32-34-36-38-45(48)52-42-44(43-54-56(50,51)53-41-40-47(3,4)5)55-46(49)39-37-35-33-31-29-27-24-21-19-17-15-13-11-9-7-2/h8,10,14,16,20-22,24-26,30,32,44H,6-7,9,11-13,15,17-19,23,27-29,31,33-43H2,1-5H3/t44-/m1/s1

InChI Key

JZKMYCPNBSRARO-USYZEHPZSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as phosphatidylcholines. These are glycerophosphocholines in which the two free -OH are attached to one fatty acid each through an ester linkage.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Glycerophospholipids

Sub Class

Glycerophosphocholines

Direct Parent

Phosphatidylcholines

Alternative Parents

Substituents

Diacylglycero-3-phosphocholine
Phosphocholine
Fatty acid ester
Dialkyl phosphate
Dicarboxylic acid or derivatives
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Fatty acyl
Quaternary ammonium salt
Tetraalkylammonium salt
Carboxylic acid ester
Carboxylic acid derivative
Organic oxygen compound
Organic nitrogen compound
Carbonyl group
Organooxygen compound
Organonitrogen compound
Organic oxide
Organopnictogen compound
Amine
Organic salt
Hydrocarbon derivative
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

Not Available

Functional Ontology

Not Available

Physical Properties

State

Solid

Predicted Properties

Property	Value	Source
Water Solubility	3.1e-05 g/L	ALOGPS
logP	5.75	ALOGPS
logP	8.61	ChemAxon
logS	-7.4	ALOGPS
pKa (Strongest Acidic)	1.86	ChemAxon
pKa (Strongest Basic)	-6.7	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	111.19 Å²	ChemAxon
Rotatable Bond Count	40	ChemAxon
Refractivity	250.17 m³·mol⁻¹	ChemAxon
Polarizability	95.95 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Deposition Date	View
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, H₂O, predicted)	2022-08-23	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, H₂O, predicted)	2022-08-23	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

All Tissues
Blood
Feces
Saliva
Urine

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference
Obesity	Increased	Association	Human Urine	HMDB	26910390
Obesity		Association	Human Blood	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children
Obesity		Association	Human Blood	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Eukaryota/Fungi	Ascomycota	1	Human feces; Human saliva	Unknown

Exposure Sources

Source Type	Source Sub-type	Species	Data Source	Reference
Animal	Milk	Bos taurus	FooDB	Manually Annotated
Animal	Milk	Bos taurus	FooDB	30994344
Animal	Milk	Bos taurus	FooDB	Manually Annotated
Animal	Milk	Bos taurus	FooDB	30994344
Animal	Milk	Bos taurus	FooDB	30994344
Animal	Milk	Bos taurus	FooDB	30994344

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Urine	Detected and Quantified	0.78	0.08			umol/mmol creatinine	Adolescent (13-18 years old)	Both	Obese	HMDB	26910390
Human Blood	Detected and Quantified	178.280	54.427			uM	Adult (>18 years old)	Female	Pregnancy	HMDB	24704061
Human Urine	Detected and Quantified			0.0	0.1	umol/mmol creatinine	Newborn (0-30 days old)	Both	Normal	HMDB	32340350
Human Urine	Detected and Quantified	0.001		0.0005	0.0036	umol/mmol creatinine	Adult (>18 years old)	Both	Normal	HMDB	24023812
Human Urine	Detected and Quantified	0.01		0.0	0.05	umol/mmol creatinine	Newborn (0-30 days old)	Female	Normal	HMDB	32340350
Human Urine	Detected and Quantified	0.01		0.0	0.1	umol/mmol creatinine	Newborn (0-30 days old)	Male	Normal	HMDB	32340350
Human Feces	Detected and Quantified	0.07	0.04			nmol/g wet feces	Adult (>18 years old)	Both	Normal	HMDB	27624970
Human Feces	Detected and Quantified	0.12	0.11			nmol/g wet feces	Adult (>18 years old)	Both	Normal	HMDB	27624970
Human Urine	Detected and Quantified	0.13	0.15			umol/mmol creatinine	Adolescent (13-18 years old)	Both	Normal	HMDB	26910390
Human Blood	Detected and Quantified	103.41	31.68			uM	Adult (>18 years old)	Both	Normal	HMDB	26010610
Human Blood	Detected and Quantified	49.1		37.8	60.8	uM	Infant (0-1 year old)		Normal	HMDB	25754623
Human Blood	Detected and Quantified	60.6		50.1	72.9	uM	Newborn (0-30 days old)		Normal	HMDB	25754623
Human Blood	Detected and Quantified	88.0	25.0			uM	Adult (>18 years old)	Both	Normal	HMDB	28278231
Human Blood	Detected and Quantified	51.9	20.0			uM	Children (1-13 years old)	Both	Obesity	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children
Human Blood	Detected and Quantified	60.5	21.7			uM	Children (1-13 years old)	Both	Obesity	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children
Human Saliva	Detected and Quantified	0.030	0.004			uM	Adult (>18 years old)	Both	Normal	HMDB	https://doi.org/10.1007/s11306-015-0840-5
Human All tissues	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	34986597

External Links

HMDB ID

Not Available

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB025689

KNApSAcK ID

Not Available

Chemspider ID

Not Available

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

Not Available

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Ramirez-Gaona M, Marcu A, Pon A, Guo AC, Sajed T, Wishart NA, Karu N, Djoumbou Feunang Y, Arndt D, Wishart DS: YMDB 2.0: a significantly expanded version of the yeast metabolome database. Nucleic Acids Res. 2017 Jan 4;45(D1):D440-D445. doi: 10.1093/nar/gkw1058. Epub 2016 Nov 28. [PubMed:27899612 ]

Showing metabocard for PC(20:5(5Z,8Z,11Z,14Z,17Z)/18:1(9Z)) (MMDBc0034059)

MOL for #<Metabolite:0x00007fdb11472518>

3D MOL for #<Metabolite:0x00007fdb11472518>

3D SDF for #<Metabolite:0x00007fdb11472518>

3D-SDF for #<Metabolite:0x00007fdb11472518>

PDB for #<Metabolite:0x00007fdb11472518>

3D PDB for #<Metabolite:0x00007fdb11472518>

SMILES for #<Metabolite:0x00007fdb11472518>

INCHI for #<Metabolite:0x00007fdb11472518>

Structure for #<Metabolite:0x00007fdb11472518>

3D Structure for #<Metabolite:0x00007fdb11472518>