Showing metabocard for PC(24:1(15Z)/18:3(9Z,12Z,15Z)) (MMDBc0034123)

Record Information
Version1.0
StatusDetected and Quantified
Creation Date2021-11-19 05:16:58 UTC
Update Date2024-04-30 20:21:32 UTC
Metabolite IDMMDBc0034123
Metabolite Identification
Common NamePC(24:1(15Z)/18:3(9Z,12Z,15Z))
DescriptionPC(24:1(15Z)/18:3(9Z,12Z,15Z)) is a phosphatidylcholine (PC or GPCho). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, glycerophosphocholines can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PC(24:1(15Z)/18:3(9Z,12Z,15Z)), in particular, consists of one chain of nervonic acid at the C-1 position and one chain of a-linolenic acid at the C-2 position. The nervonic acid moiety is derived from fish oils, while the a-linolenic acid moiety is derived from seed oils, especially canola and soybean oil. Phospholipids, are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling.↵↵While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PCs can be synthesized via three different routes. In one route, choline is activated first by phosphorylation and then by coupling to CDP prior to attachment to phosphatidic acid. PCs can also synthesized by the addition of choline to CDP-activated 1,2-diacylglycerol. A third route to PC synthesis involves the conversion of either PS or PE to PC.
Structure
MOLSDFPDBSMILESInChI

MOL for #<Metabolite:0x00005634c2ab6cb8>


  Mrv0541 02251201562D          

 60 59  0  0  1  0            999 V2000
    6.9908    8.9862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7053    8.5737    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4198    8.9862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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   10.5632    8.5737    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.2776    8.9862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9921    8.5737    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.7066    8.9862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.4211    8.5737    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.1355    8.9862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.8500    8.5737    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5645    8.9862    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   16.2789    8.5737    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  CHG  2  32  -1  37   1
M  END
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3D MOL for #<Metabolite:0x00005634c2ab6cb8>

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3D SDF for #<Metabolite:0x00005634c2ab6cb8>

  Mrv0541 02251201562D          

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 58 59  1  0  0  0  0
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M  CHG  2  32  -1  37   1
M  END
> <DATABASE_ID>
MMDBc0034123

> <DATABASE_NAME>
MIME

> <SMILES>
CCCCCCCCC=CCCCCCCCCCCCCCC(=O)OC[C@H](COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCC=CCC=CCC=CCC

> <INCHI_IDENTIFIER>
InChI=1S/C50H92NO8P/c1-6-8-10-12-14-16-18-20-22-23-24-25-26-27-29-30-32-34-36-38-40-42-49(52)56-46-48(47-58-60(54,55)57-45-44-51(3,4)5)59-50(53)43-41-39-37-35-33-31-28-21-19-17-15-13-11-9-7-2/h9,11,15,17,20-22,28,48H,6-8,10,12-14,16,18-19,23-27,29-47H2,1-5H3/t48-/m1/s1

> <INCHI_KEY>
OENQWPYNVSKSGJ-QSCHNALKSA-N

> <FORMULA>
C50H92NO8P

> <MOLECULAR_WEIGHT>
866.2411

> <EXACT_MASS>
865.656055437

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
108.96510695265133

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
trimethyl(2-{[(2R)-2-(octadeca-9,12,15-trienoyloxy)-3-(tetracos-15-enoyloxy)propyl phosphonato]oxy}ethyl)azanium

> <ALOGPS_LOGP>
6.56

> <JCHEM_LOGP>
11.111796402528253

> <ALOGPS_LOGS>
-7.53

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA_STRONGEST_ACIDIC>
1.8550572064469137

> <JCHEM_PKA_STRONGEST_BASIC>
-6.744159309169722

> <JCHEM_POLAR_SURFACE_AREA>
111.19

> <JCHEM_REFRACTIVITY>
266.3415

> <JCHEM_ROTATABLE_BOND_COUNT>
46

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.70e-05 g/l

> <JCHEM_TRADITIONAL_IUPAC>
trimethyl(2-{[(2R)-2-(octadeca-9,12,15-trienoyloxy)-3-(tetracos-15-enoyloxy)propyl phosphonato]oxy}ethyl)azanium

> <JCHEM_VEBER_RULE>
0

$$$$

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3D-SDF for #<Metabolite:0x00005634c2ab6cb8>
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PDB for #<Metabolite:0x00005634c2ab6cb8>
HEADER    PROTEIN                                 25-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   25-FEB-12         0                                  
HETATM    1  C   UNK     0      13.049  16.774   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      14.383  16.004   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      15.717  16.774   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      17.051  16.004   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      18.384  16.774   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      19.718  16.004   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      21.052  16.774   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      22.385  16.004   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      23.719  16.774   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      25.053  16.004   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      26.386  16.774   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      27.720  16.004   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      29.054  16.774   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      30.387  16.004   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      31.721  16.774   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      33.055  16.004   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0      34.388  16.774   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      35.722  16.004   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      37.056  16.774   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      38.389  16.004   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      39.723  16.774   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      41.057  16.004   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      42.391  16.774   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      43.724  16.004   0.000  0.00  0.00           C+0
HETATM   25  O   UNK     0      43.724  14.464   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0      45.058  16.774   0.000  0.00  0.00           O+0
HETATM   27  C   UNK     0      46.392  16.004   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      47.725  16.774   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0      47.725  18.314   0.000  0.00  0.00           C+0
HETATM   30  O   UNK     0      49.059  19.084   0.000  0.00  0.00           O+0
HETATM   31  P   UNK     0      49.059  20.624   0.000  0.00  0.00           P+0
HETATM   32  O   UNK     0      47.519  20.624   0.000  0.00  0.00           O-1
HETATM   33  O   UNK     0      50.599  20.624   0.000  0.00  0.00           O+0
HETATM   34  O   UNK     0      49.059  22.164   0.000  0.00  0.00           O+0
HETATM   35  C   UNK     0      50.393  22.934   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0      50.393  24.474   0.000  0.00  0.00           C+0
HETATM   37  N   UNK     0      51.726  25.244   0.000  0.00  0.00           N+1
HETATM   38  C   UNK     0      52.496  23.911   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0      50.956  26.578   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0      53.060  26.014   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      49.059  16.004   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      50.393  16.774   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      50.393  18.314   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0      51.726  16.004   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      53.060  16.774   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      54.394  16.004   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      55.727  16.774   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      57.061  16.004   0.000  0.00  0.00           C+0
HETATM   49  C   UNK     0      58.395  16.774   0.000  0.00  0.00           C+0
HETATM   50  C   UNK     0      59.728  16.004   0.000  0.00  0.00           C+0
HETATM   51  C   UNK     0      61.062  16.774   0.000  0.00  0.00           C+0
HETATM   52  C   UNK     0      62.396  16.004   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      63.729  16.774   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0      63.729  18.314   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0      65.063  19.084   0.000  0.00  0.00           C+0
HETATM   56  C   UNK     0      65.063  20.624   0.000  0.00  0.00           C+0
HETATM   57  C   UNK     0      63.729  21.394   0.000  0.00  0.00           C+0
HETATM   58  C   UNK     0      63.729  22.934   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0      62.396  23.704   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0      61.062  22.934   0.000  0.00  0.00           C+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23                                                       
CONECT   23   22   24                                                       
CONECT   24   23   25   26                                                  
CONECT   25   24                                                            
CONECT   26   24   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   41                                                  
CONECT   29   28   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32   33   34                                             
CONECT   32   31                                                            
CONECT   33   31                                                            
CONECT   34   31   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37                                                       
CONECT   37   36   38   39   40                                             
CONECT   38   37                                                            
CONECT   39   37                                                            
CONECT   40   37                                                            
CONECT   41   28   42                                                       
CONECT   42   41   43   44                                                  
CONECT   43   42                                                            
CONECT   44   42   45                                                       
CONECT   45   44   46                                                       
CONECT   46   45   47                                                       
CONECT   47   46   48                                                       
CONECT   48   47   49                                                       
CONECT   49   48   50                                                       
CONECT   50   49   51                                                       
CONECT   51   50   52                                                       
CONECT   52   51   53                                                       
CONECT   53   52   54                                                       
CONECT   54   53   55                                                       
CONECT   55   54   56                                                       
CONECT   56   55   57                                                       
CONECT   57   56   58                                                       
CONECT   58   57   59                                                       
CONECT   59   58   60                                                       
CONECT   60   59                                                            
MASTER        0    0    0    0    0    0    0    0   60    0  118    0
END

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3D PDB for #<Metabolite:0x00005634c2ab6cb8>
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SMILES for #<Metabolite:0x00005634c2ab6cb8>
CCCCCCCCC=CCCCCCCCCCCCCCC(=O)OC[C@H](COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCC=CCC=CCC=CCC
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INCHI for #<Metabolite:0x00005634c2ab6cb8>
InChI=1S/C50H92NO8P/c1-6-8-10-12-14-16-18-20-22-23-24-25-26-27-29-30-32-34-36-38-40-42-49(52)56-46-48(47-58-60(54,55)57-45-44-51(3,4)5)59-50(53)43-41-39-37-35-33-31-28-21-19-17-15-13-11-9-7-2/h9,11,15,17,20-22,28,48H,6-8,10,12-14,16,18-19,23-27,29-47H2,1-5H3/t48-/m1/s1
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SynonymsNot Available
Molecular FormulaC50H92NO8P
Average Mass866.2411
Monoisotopic Mass865.656055437
IUPAC Nametrimethyl(2-{[(2R)-2-(octadeca-9,12,15-trienoyloxy)-3-(tetracos-15-enoyloxy)propyl phosphonato]oxy}ethyl)azanium
Traditional Nametrimethyl(2-{[(2R)-2-(octadeca-9,12,15-trienoyloxy)-3-(tetracos-15-enoyloxy)propyl phosphonato]oxy}ethyl)azanium
CAS Registry NumberNot Available
SMILES
CCCCCCCCC=CCCCCCCCCCCCCCC(=O)OC[C@H](COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CCCCCCCC=CCC=CCC=CCC
InChI Identifier
InChI=1S/C50H92NO8P/c1-6-8-10-12-14-16-18-20-22-23-24-25-26-27-29-30-32-34-36-38-40-42-49(52)56-46-48(47-58-60(54,55)57-45-44-51(3,4)5)59-50(53)43-41-39-37-35-33-31-28-21-19-17-15-13-11-9-7-2/h9,11,15,17,20-22,28,48H,6-8,10,12-14,16,18-19,23-27,29-47H2,1-5H3/t48-/m1/s1
InChI KeyOENQWPYNVSKSGJ-QSCHNALKSA-N