| MMDBm0001982 | Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 | Bacteria | Spirochaetes | Not Available | Not Available | RHEA |
| MMDBm0001974 | Leptospira interrogans serovar Lai str. 56601 | Bacteria | Spirochaetes | Not Available | Not Available | RHEA |
| MMDBm0001777 | Leptospira borgpetersenii serovar Hardjo-bovis JB197 | Bacteria | Spirochaetes | Human | Not Available | RHEA |
| MMDBm0001776 | Leptospira borgpetersenii serovar Hardjo-bovis L550 | Bacteria | Spirochaetes | Human | Not Available | RHEA |
| MMDBm0086646 | Lopadostoma turgidum | Fungi | Ascomycota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0809016 | Phascolarctobacterium succinatutens YIT 12067 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000216 | Megamonas hypermegale ART12/1 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809112 | Mitsuokella multacida DSM 20544 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000218 | Methanobrevibacter smithii ATCC 35061 | Archaea | Euryarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0001599 | Escherichia coli ED1a | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002402 | Pseudomonas fluorescens SBW25 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002534 | Shigella flexneri 5 str. 8401 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0533439 | Citrobacter portucalensis | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0541555 | Escherichia coli K-12 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002764 | Xanthomonas campestris pv. vesicatoria str. 85-10 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002515 | Shewanella amazonensis SB2B | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002496 | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002519 | Shewanella putrefaciens CN-32 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001247 | Azotobacter vinelandii DJ | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002392 | Pseudomonas putida KT2440 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002399 | Pseudomonas aeruginosa UCBPP-PA14 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002767 | Xanthomonas oryzae pv. oryzae PXO99A | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001600 | Escherichia coli 55989 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002511 | Shewanella sp. MR-7 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001587 | Escherichia coli APEC O1 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
