MiMeDB: Showing metabocard for 15-cis-phytoene (MMDBc0054149)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2022-06-05 22:55:43 UTC

Update Date

2024-04-30 20:51:41 UTC

Metabolite ID

MMDBc0054149

Metabolite Identification

Common Name

15-cis-phytoene

Description

15-cis-Phytoene is found in cauliflower. 15-cis-Phytoene is isolated from tomato (Lycopersicon esculentum var. `Tangella'). 7,7',8,8',11,11',12,12'-Octahydrocarotene, is a carotenoid found in human fluids. Carotenoids are isoprenoid molecules that are widespread in nature and are typically seen as pigments in fruits, flowers, birds, and crustacea. Animals are unable to synthesize carotenoids de novo, and rely upon the diet as a source of these compounds. Over recent years there has been considerable interest in dietary carotenoids with respect to their potential in alleviating age-related diseases in humans. This attention has been mirrored by significant advances in cloning most of the carotenoid genes and in the genetic manipulation of crop plants with the intention of increasing levels in the diet. Studies have shown an inverse relationship between the consumption of certain fruits and vegetables and the risk of epithelial cancer. Since carotenoids are among the micronutrients found in cancer-preventive foods, detailed qualitative and quantitative determination of these compounds, particularly in fruits and vegetables and in human plasma, have recently become increasingly important (PMID: 1416048 , 15003396 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv1652307201900052D          

 40 39  0  0  0  0            999 V2000
10010.741410005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10010.025910005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10009.312310005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10008.596810005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10007.881210005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10007.167810005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10006.452110005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10005.627110005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10004.912210005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10004.195310005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10003.480610005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10002.765910005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10002.051110005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10001.336210005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10000.621510005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9999.906710005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9999.191910005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9998.477010005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9997.762210005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9997.047510005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9996.332810005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9995.618110005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9994.903110005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9995.618110006.6878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
 9998.477010006.6878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10001.336210006.6878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10004.195310006.6878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10007.881210006.6878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10011.454910005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10012.170510005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10012.886010005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10013.599510005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10014.315110005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10015.030710005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10015.744110005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10016.459810005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10017.175310005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10016.459810006.6878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10013.599510006.6878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10010.741410006.6878    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  2  0  0  0  0
  1 29  1  0  0  0  0
  1 40  1  0  0  0  0
  2  3  1  0  0  0  0
  3  4  1  0  0  0  0
  4  5  1  0  0  0  0
  5  6  2  0  0  0  0
  5 28  1  0  0  0  0
  6  7  1  0  0  0  0
  7  8  2  0  0  0  0
  8  9  1  0  0  0  0
  9 10  2  0  0  0  0
 10 11  1  0  0  0  0
 10 27  1  0  0  0  0
 11 12  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 14 26  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  2  0  0  0  0
 18 19  1  0  0  0  0
 18 25  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 21 22  2  0  0  0  0
 22 23  1  0  0  0  0
 22 24  1  0  0  0  0
 29 30  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  2  0  0  0  0
 32 33  1  0  0  0  0
 32 39  1  0  0  0  0
 33 34  1  0  0  0  0
 34 35  1  0  0  0  0
 35 36  2  0  0  0  0
 36 37  1  0  0  0  0
 36 38  1  0  0  0  0
M  END

HMDB0039093
     RDKit          3D
15-cis-Phytoene
104103  0  0  0  0  0  0  0  0999 V2000
   14.3788   -1.5702    1.6624 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7689   -2.2646    0.4919 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4660   -3.4612   -0.0378 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6426   -1.7855   -0.0244 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9000   -2.3282   -1.1629 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5207   -2.8167   -0.8911 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5506   -1.8402   -0.3990 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7056   -1.0927    0.8479 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4283   -1.6287   -1.1348 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4151   -0.6416   -0.6784 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1158   -1.2508   -0.2480 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2365   -0.0968    0.2152 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6991    0.7299    1.3559 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0980    0.0612   -0.4152 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0791    1.0592   -0.2005 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3257    2.2425    0.6355 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1304    3.1572    0.7145 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2677    4.4312    1.4948 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9797    2.9071    0.1366 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.5956    2.4324   -1.0583 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8236    2.2714   -1.5880 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.2044    1.7991   -0.3035 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2894    1.0254    0.3750 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6360   -0.2568   -0.2849 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8995   -0.4065   -0.7384 C   0  0  0  0  0  0  0  0  0  0  0  0
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  -10.2214   -1.7032   -1.3857 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3285   -2.4596   -0.6782 C   0  0  0  0  0  0  0  0  0  0  0  0
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  -11.7081   -2.3687    1.7223 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3175   -2.6842    3.1471 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.9674   -1.6146    1.5141 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2851   -0.4716    1.6085 H   0  0  0  0  0  0  0  0  0  0  0  0
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   10.5498   -3.7081   -0.1889 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.2164   -1.9967    0.5546 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.6737   -1.7483   -1.1136 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8623    1.7816    1.1563 H   0  0  0  0  0  0  0  0  0  0  0  0
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    6.7481    0.3325    1.5830 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8672   -0.6761   -1.2465 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.6853    1.4141   -1.1983 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1280    0.5546    0.2303 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.1283    2.9031    0.2175 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6309    2.0031    1.6936 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.0875    5.2794    0.8283 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.2881    4.5323    1.9168 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5463    4.3782    2.3267 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.4888    2.1381   -1.3211 H   0  0  0  0  0  0  0  0  0  0  0  0
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   -7.9868    0.8426    1.4362 H   0  0  0  0  0  0  0  0  0  0  0  0
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  -10.5630   -1.5246   -2.4256 H   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  1  0
  2  3  1  0
  2  4  2  3
  4  5  1  0
  5  6  1  0
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  7  8  1  0
  7  9  2  0
  9 10  1  0
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 37 98  1  0
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 39100  1  0
 39101  1  0
 40102  1  0
 40103  1  0
 40104  1  0
M  END


  Mrv1652307201900052D          

 40 39  0  0  0  0            999 V2000
10010.741410005.8623    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
10010.025910005.4507    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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  1  2  2  0  0  0  0
  1 29  1  0  0  0  0
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 36 38  1  0  0  0  0
M  END
> <DATABASE_ID>
MMDBc0054149

> <DATABASE_NAME>
MIME

> <SMILES>
CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\C=C/C=C(\C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C

> <INCHI_IDENTIFIER>
InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3/b12-11-,35-21+,36-22+,37-27+,38-28+,39-29+,40-30+

> <INCHI_KEY>
YVLPJIGOMTXXLP-BHLJUDRVSA-N

> <FORMULA>
C40H64

> <MOLECULAR_WEIGHT>
544.952

> <EXACT_MASS>
544.500802061

> <JCHEM_ACCEPTOR_COUNT>
0

> <JCHEM_ATOM_COUNT>
104

> <JCHEM_AVERAGE_POLARIZABILITY>
74.47233693728761

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
0

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(6E,10E,14E,16Z,18E,22E,26E)-2,6,10,14,19,23,27,31-octamethyldotriaconta-2,6,10,14,16,18,22,26,30-nonaene

> <ALOGPS_LOGP>
9.60

> <JCHEM_LOGP>
13.379518445999997

> <ALOGPS_LOGS>
-6.23

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_POLAR_SURFACE_AREA>
0.0

> <JCHEM_REFRACTIVITY>
193.33960000000008

> <JCHEM_ROTATABLE_BOND_COUNT>
20

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.17e-04 g/l

> <JCHEM_TRADITIONAL_IUPAC>
cis-phytoene

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0039093
     RDKit          3D
15-cis-Phytoene
104103  0  0  0  0  0  0  0  0999 V2000
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 22 74  1  0
 24 75  1  0
 24 76  1  0
 24 77  1  0
 25 78  1  0
 25 79  1  0
 26 80  1  0
 26 81  1  0
 27 82  1  0
 29 83  1  0
 29 84  1  0
 29 85  1  0
 30 86  1  0
 30 87  1  0
 31 88  1  0
 31 89  1  0
 32 90  1  0
 34 91  1  0
 34 92  1  0
 34 93  1  0
 35 94  1  0
 35 95  1  0
 36 96  1  0
 36 97  1  0
 37 98  1  0
 39 99  1  0
 39100  1  0
 39101  1  0
 40102  1  0
 40103  1  0
 40104  1  0
M  END

HEADER    PROTEIN                                 20-JUL-19   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   20-JUL-19         0                                  
HETATM    1  C   UNK     0    8686.7178677.610   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0    8685.3828676.841   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0    8684.0508677.610   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0    8682.7148676.841   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0    8681.3788677.610   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0    8680.0478676.841   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0    8678.7118677.610   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0    8677.1718677.610   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0    8675.8368676.841   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0    8674.4988677.610   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0    8673.1648676.841   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0    8671.8308677.610   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0    8670.4958676.841   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0    8669.1618677.610   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0    8667.8278676.841   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0    8666.4938677.610   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0    8665.1588676.841   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0    8663.8248677.610   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0    8662.4898676.841   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0    8661.1558677.610   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0    8659.8218676.841   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0    8658.4878677.610   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0    8657.1528676.841   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0    8658.4878679.151   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0    8663.8248679.151   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0    8669.1618679.151   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0    8674.4988679.151   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0    8681.3788679.151   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0    8688.0498676.841   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0    8689.3858677.610   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0    8690.7218676.841   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0    8692.0528677.610   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0    8693.3888676.841   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0    8694.7248677.610   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0    8696.0568676.841   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0    8697.3928677.610   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0    8698.7278676.841   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0    8697.3928679.151   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0    8692.0528679.151   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0    8686.7178679.151   0.000  0.00  0.00           C+0
CONECT    1    2   29   40                                                  
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6   28                                                  
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11   27                                                  
CONECT   11   10   12                                                       
CONECT   12   11   13                                                       
CONECT   13   12   14                                                       
CONECT   14   13   15   26                                                  
CONECT   15   14   16                                                       
CONECT   16   15   17                                                       
CONECT   17   16   18                                                       
CONECT   18   17   19   25                                                  
CONECT   19   18   20                                                       
CONECT   20   19   21                                                       
CONECT   21   20   22                                                       
CONECT   22   21   23   24                                                  
CONECT   23   22                                                            
CONECT   24   22                                                            
CONECT   25   18                                                            
CONECT   26   14                                                            
CONECT   27   10                                                            
CONECT   28    5                                                            
CONECT   29    1   30                                                       
CONECT   30   29   31                                                       
CONECT   31   30   32                                                       
CONECT   32   31   33   39                                                  
CONECT   33   32   34                                                       
CONECT   34   33   35                                                       
CONECT   35   34   36                                                       
CONECT   36   35   37   38                                                  
CONECT   37   36                                                            
CONECT   38   36                                                            
CONECT   39   32                                                            
CONECT   40    1                                                            
MASTER        0    0    0    0    0    0    0    0   40    0   78    0
END

COMPND    HMDB0039093
HETATM    1  C1  UNL     1      14.379  -1.570   1.662  1.00  0.00           C  
HETATM    2  C2  UNL     1      13.769  -2.265   0.492  1.00  0.00           C  
HETATM    3  C3  UNL     1      14.466  -3.461  -0.038  1.00  0.00           C  
HETATM    4  C4  UNL     1      12.643  -1.785  -0.024  1.00  0.00           C  
HETATM    5  C5  UNL     1      11.900  -2.328  -1.163  1.00  0.00           C  
HETATM    6  C6  UNL     1      10.521  -2.817  -0.891  1.00  0.00           C  
HETATM    7  C7  UNL     1       9.551  -1.840  -0.399  1.00  0.00           C  
HETATM    8  C8  UNL     1       9.706  -1.093   0.848  1.00  0.00           C  
HETATM    9  C9  UNL     1       8.428  -1.629  -1.135  1.00  0.00           C  
HETATM   10  C10 UNL     1       7.415  -0.642  -0.678  1.00  0.00           C  
HETATM   11  C11 UNL     1       6.116  -1.251  -0.248  1.00  0.00           C  
HETATM   12  C12 UNL     1       5.236  -0.097   0.215  1.00  0.00           C  
HETATM   13  C13 UNL     1       5.699   0.730   1.356  1.00  0.00           C  
HETATM   14  C14 UNL     1       4.098   0.061  -0.415  1.00  0.00           C  
HETATM   15  C15 UNL     1       3.079   1.059  -0.201  1.00  0.00           C  
HETATM   16  C16 UNL     1       3.326   2.242   0.635  1.00  0.00           C  
HETATM   17  C17 UNL     1       2.130   3.157   0.714  1.00  0.00           C  
HETATM   18  C18 UNL     1       2.268   4.431   1.495  1.00  0.00           C  
HETATM   19  C19 UNL     1       0.980   2.907   0.137  1.00  0.00           C  
HETATM   20  C20 UNL     1      -0.134   3.860   0.266  1.00  0.00           C  
HETATM   21  C21 UNL     1      -1.290   3.621  -0.287  1.00  0.00           C  
HETATM   22  C22 UNL     1      -1.596   2.432  -1.058  1.00  0.00           C  
HETATM   23  C23 UNL     1      -2.824   2.271  -1.588  1.00  0.00           C  
HETATM   24  C24 UNL     1      -3.831   3.322  -1.371  1.00  0.00           C  
HETATM   25  C25 UNL     1      -3.063   1.055  -2.368  1.00  0.00           C  
HETATM   26  C26 UNL     1      -4.099   0.169  -1.740  1.00  0.00           C  
HETATM   27  C27 UNL     1      -5.385   0.859  -1.600  1.00  0.00           C  
HETATM   28  C28 UNL     1      -5.912   1.083  -0.403  1.00  0.00           C  
HETATM   29  C29 UNL     1      -5.160   0.613   0.796  1.00  0.00           C  
HETATM   30  C30 UNL     1      -7.204   1.799  -0.303  1.00  0.00           C  
HETATM   31  C31 UNL     1      -8.289   1.025   0.375  1.00  0.00           C  
HETATM   32  C32 UNL     1      -8.636  -0.257  -0.285  1.00  0.00           C  
HETATM   33  C33 UNL     1      -9.900  -0.406  -0.738  1.00  0.00           C  
HETATM   34  C34 UNL     1     -10.890   0.682  -0.575  1.00  0.00           C  
HETATM   35  C35 UNL     1     -10.221  -1.703  -1.386  1.00  0.00           C  
HETATM   36  C36 UNL     1     -11.329  -2.460  -0.678  1.00  0.00           C  
HETATM   37  C37 UNL     1     -10.962  -2.761   0.719  1.00  0.00           C  
HETATM   38  C38 UNL     1     -11.708  -2.369   1.722  1.00  0.00           C  
HETATM   39  C39 UNL     1     -11.318  -2.684   3.147  1.00  0.00           C  
HETATM   40  C40 UNL     1     -12.967  -1.615   1.514  1.00  0.00           C  
HETATM   41  H1  UNL     1      14.285  -0.472   1.608  1.00  0.00           H  
HETATM   42  H2  UNL     1      15.450  -1.831   1.810  1.00  0.00           H  
HETATM   43  H3  UNL     1      13.809  -1.885   2.563  1.00  0.00           H  
HETATM   44  H4  UNL     1      14.149  -4.327   0.594  1.00  0.00           H  
HETATM   45  H5  UNL     1      14.329  -3.655  -1.099  1.00  0.00           H  
HETATM   46  H6  UNL     1      15.573  -3.285   0.122  1.00  0.00           H  
HETATM   47  H7  UNL     1      12.238  -0.885   0.441  1.00  0.00           H  
HETATM   48  H8  UNL     1      11.819  -1.566  -2.005  1.00  0.00           H  
HETATM   49  H9  UNL     1      12.464  -3.167  -1.654  1.00  0.00           H  
HETATM   50  H10 UNL     1      10.172  -3.298  -1.860  1.00  0.00           H  
HETATM   51  H11 UNL     1      10.550  -3.708  -0.189  1.00  0.00           H  
HETATM   52  H12 UNL     1       8.744  -0.987   1.414  1.00  0.00           H  
HETATM   53  H13 UNL     1      10.063  -0.050   0.726  1.00  0.00           H  
HETATM   54  H14 UNL     1      10.353  -1.678   1.556  1.00  0.00           H  
HETATM   55  H15 UNL     1       8.337  -2.206  -2.035  1.00  0.00           H  
HETATM   56  H16 UNL     1       7.837   0.124  -0.014  1.00  0.00           H  
HETATM   57  H17 UNL     1       7.146  -0.047  -1.619  1.00  0.00           H  
HETATM   58  H18 UNL     1       6.216  -1.997   0.555  1.00  0.00           H  
HETATM   59  H19 UNL     1       5.674  -1.748  -1.114  1.00  0.00           H  
HETATM   60  H20 UNL     1       5.862   1.782   1.156  1.00  0.00           H  
HETATM   61  H21 UNL     1       5.174   0.493   2.311  1.00  0.00           H  
HETATM   62  H22 UNL     1       6.748   0.332   1.583  1.00  0.00           H  
HETATM   63  H23 UNL     1       3.867  -0.676  -1.246  1.00  0.00           H  
HETATM   64  H24 UNL     1       2.685   1.414  -1.198  1.00  0.00           H  
HETATM   65  H25 UNL     1       2.128   0.555   0.230  1.00  0.00           H  
HETATM   66  H26 UNL     1       4.128   2.903   0.218  1.00  0.00           H  
HETATM   67  H27 UNL     1       3.631   2.003   1.694  1.00  0.00           H  
HETATM   68  H28 UNL     1       2.087   5.279   0.828  1.00  0.00           H  
HETATM   69  H29 UNL     1       3.288   4.532   1.917  1.00  0.00           H  
HETATM   70  H30 UNL     1       1.546   4.378   2.327  1.00  0.00           H  
HETATM   71  H31 UNL     1       0.903   1.989  -0.423  1.00  0.00           H  
HETATM   72  H32 UNL     1       0.022   4.763   0.825  1.00  0.00           H  
HETATM   73  H33 UNL     1      -2.104   4.361  -0.163  1.00  0.00           H  
HETATM   74  H34 UNL     1      -0.861   1.678  -1.214  1.00  0.00           H  
HETATM   75  H35 UNL     1      -3.415   4.341  -1.636  1.00  0.00           H  
HETATM   76  H36 UNL     1      -4.160   3.317  -0.320  1.00  0.00           H  
HETATM   77  H37 UNL     1      -4.724   3.150  -2.012  1.00  0.00           H  
HETATM   78  H38 UNL     1      -3.478   1.332  -3.384  1.00  0.00           H  
HETATM   79  H39 UNL     1      -2.138   0.454  -2.511  1.00  0.00           H  
HETATM   80  H40 UNL     1      -4.292  -0.705  -2.435  1.00  0.00           H  
HETATM   81  H41 UNL     1      -3.778  -0.215  -0.744  1.00  0.00           H  
HETATM   82  H42 UNL     1      -5.924   1.188  -2.508  1.00  0.00           H  
HETATM   83  H43 UNL     1      -5.647   0.922   1.745  1.00  0.00           H  
HETATM   84  H44 UNL     1      -5.026  -0.471   0.816  1.00  0.00           H  
HETATM   85  H45 UNL     1      -4.155   1.089   0.781  1.00  0.00           H  
HETATM   86  H46 UNL     1      -7.489   2.138  -1.321  1.00  0.00           H  
HETATM   87  H47 UNL     1      -7.006   2.733   0.307  1.00  0.00           H  
HETATM   88  H48 UNL     1      -7.987   0.843   1.436  1.00  0.00           H  
HETATM   89  H49 UNL     1      -9.179   1.689   0.430  1.00  0.00           H  
HETATM   90  H50 UNL     1      -7.916  -1.056  -0.412  1.00  0.00           H  
HETATM   91  H51 UNL     1     -11.083   0.949   0.481  1.00  0.00           H  
HETATM   92  H52 UNL     1     -11.845   0.351  -1.023  1.00  0.00           H  
HETATM   93  H53 UNL     1     -10.587   1.610  -1.125  1.00  0.00           H  
HETATM   94  H54 UNL     1     -10.563  -1.525  -2.426  1.00  0.00           H  
HETATM   95  H55 UNL     1      -9.341  -2.363  -1.469  1.00  0.00           H  
HETATM   96  H56 UNL     1     -12.301  -1.889  -0.746  1.00  0.00           H  
HETATM   97  H57 UNL     1     -11.531  -3.418  -1.195  1.00  0.00           H  
HETATM   98  H58 UNL     1     -10.056  -3.318   0.898  1.00  0.00           H  
HETATM   99  H59 UNL     1     -12.250  -2.765   3.741  1.00  0.00           H  
HETATM  100  H60 UNL     1     -10.759  -3.650   3.190  1.00  0.00           H  
HETATM  101  H61 UNL     1     -10.713  -1.869   3.570  1.00  0.00           H  
HETATM  102  H62 UNL     1     -12.780  -0.596   1.165  1.00  0.00           H  
HETATM  103  H63 UNL     1     -13.629  -2.121   0.757  1.00  0.00           H  
HETATM  104  H64 UNL     1     -13.554  -1.611   2.484  1.00  0.00           H  
CONECT    1    2   41   42   43
CONECT    2    3    4    4
CONECT    3   44   45   46
CONECT    4    5   47
CONECT    5    6   48   49
CONECT    6    7   50   51
CONECT    7    8    9    9
CONECT    8   52   53   54
CONECT    9   10   55
CONECT   10   11   56   57
CONECT   11   12   58   59
CONECT   12   13   14   14
CONECT   13   60   61   62
CONECT   14   15   63
CONECT   15   16   64   65
CONECT   16   17   66   67
CONECT   17   18   19   19
CONECT   18   68   69   70
CONECT   19   20   71
CONECT   20   21   21   72
CONECT   21   22   73
CONECT   22   23   23   74
CONECT   23   24   25
CONECT   24   75   76   77
CONECT   25   26   78   79
CONECT   26   27   80   81
CONECT   27   28   28   82
CONECT   28   29   30
CONECT   29   83   84   85
CONECT   30   31   86   87
CONECT   31   32   88   89
CONECT   32   33   33   90
CONECT   33   34   35
CONECT   34   91   92   93
CONECT   35   36   94   95
CONECT   36   37   96   97
CONECT   37   38   38   98
CONECT   38   39   40
CONECT   39   99  100  101
CONECT   40  102  103  104
END

HMDB0039093
     RDKit          3D
15-cis-Phytoene
104103  0  0  0  0  0  0  0  0999 V2000
   14.3788   -1.5702    1.6624 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7689   -2.2646    0.4919 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.4660   -3.4612   -0.0378 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6426   -1.7855   -0.0244 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.9000   -2.3282   -1.1629 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5207   -2.8167   -0.8911 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.5506   -1.8402   -0.3990 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.7056   -1.0927    0.8479 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4283   -1.6287   -1.1348 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.4151   -0.6416   -0.6784 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.1158   -1.2508   -0.2480 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2365   -0.0968    0.2152 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6991    0.7299    1.3559 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0980    0.0612   -0.4152 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0791    1.0592   -0.2005 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3257    2.2425    0.6355 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1304    3.1572    0.7145 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2677    4.4312    1.4948 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9797    2.9071    0.1366 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1344    3.8605    0.2656 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2901    3.6211   -0.2869 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5956    2.4324   -1.0583 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8236    2.2714   -1.5880 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8306    3.3216   -1.3706 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

Synonyms

Value	Source
(6E,10E,14E,16Z,18E,22E,26E)-2,6,10,14,19,23,27,31-Octamethyldotriaconta-2,6,10,14,16,18,22,26,30-nonaene	ChEBI
cis-Phytoene	ChEBI
Phytoene	Kegg
7,7',8,8',11,11',12,12'-Octahydro-psi,psi-carotene	HMDB
Phytoene, (15-cis)-isomer	HMDB
Phytoene, (cis)-isomer	HMDB
(15Z)-Phytoene	HMDB
15,15'-cis-Phytoene	HMDB
15,15’-cis-phytoene	HMDB
15-cis-7,7',8,8',11,11',12,12'-Octahydro-psi,psi-carotene	HMDB
15-cis-7,7',8,8',11,11',12,12'-Octahydro-ψ,ψ-carotene	HMDB
15-cis-7,7’,8,8’,11,11’,12,12’-octahydro-ψ,ψ-carotene	HMDB
15-cis-Phytoene	HMDB

Molecular Formula

C₄₀H₆₄

Average Mass

544.952

Monoisotopic Mass

544.500802061

IUPAC Name

(6E,10E,14E,16Z,18E,22E,26E)-2,6,10,14,19,23,27,31-octamethyldotriaconta-2,6,10,14,16,18,22,26,30-nonaene

Traditional Name

cis-phytoene

CAS Registry Number

Not Available

SMILES

CC(C)=CCC\C(C)=C\CC\C(C)=C\CC\C(C)=C\C=C/C=C(\C)CC\C=C(/C)CC\C=C(/C)CCC=C(C)C

InChI Identifier

InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3/b12-11-,35-21+,36-22+,37-27+,38-28+,39-29+,40-30+

InChI Key

YVLPJIGOMTXXLP-BHLJUDRVSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as carotenes. These are a type of unsaturated hydrocarbons containing eight consecutive isoprene units. They are characterized by the presence of two end-groups (mostly cyclohexene rings, but also cyclopentene rings or acyclic groups) linked by a long branched alkyl chain. Carotenes belonging form a subgroup of the carotenoids family.

Kingdom

Organic compounds

Super Class

Lipids and lipid-like molecules

Class

Prenol lipids

Sub Class

Tetraterpenoids

Direct Parent

Carotenes

Alternative Parents

Substituents

Carotene
Branched unsaturated hydrocarbon
Unsaturated aliphatic hydrocarbon
Unsaturated hydrocarbon
Olefin
Acyclic olefin
Hydrocarbon
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

phytoene (CHEBI:27787 )
C40 isoprenoids (tetraterpenes) (C05421 )
Carotenoids (C05421 )
C40 isoprenoids (tetraterpenes) (LMPR01070255 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	0.00032 g/L	ALOGPS
logP	9.6	ALOGPS
logP	13.38	ChemAxon
logS	-6.2	ALOGPS
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	0	ChemAxon
Hydrogen Donor Count	0	ChemAxon
Polar Surface Area	0 Å²	ChemAxon
Rotatable Bond Count	20	ChemAxon
Refractivity	193.34 m³·mol⁻¹	ChemAxon
Polarizability	74.47 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-0002-0221190000-d93f77f3ff241df961d5	2017-06-28	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0a73-1894620000-793d9becebb0aec43dfa	2017-06-28	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-000i-3677900000-14db45f4b146f4e99a28	2017-06-28	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0006-0000090000-9ceac4f213b24253b327	2017-06-28	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-0006-0000090000-d401744bb8038d261a1e	2017-06-28	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-004i-1955680000-c478d68aa5230706f73e	2017-06-28	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Negative	splash10-0006-0000090000-a09e228124f7e70550ec	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Negative	splash10-0006-0130190000-51d2c39c749d50842ec5	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Negative	splash10-0a6r-1301910000-b874116ff6c9bd752bf0	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-0002-2450690000-e405778b880bd192827d	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-0fsr-2100920000-e081fc96fa43a10f0504	2021-09-22	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-01zi-1423910000-2025343822b18280fa44	2021-09-22	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites
Bacteria	Actinobacteria	1
Bacteria	Proteobacteria	3	Human
Bacteria	Cyanobacteria	1
Bacteria	nah	2	Human
Eukaryota/Fungi	Ascomycota	12	Human feces
Eukaryota/Fungi	Mucoromycota	3
Eukaryota/Fungi	Basidiomycota	3	Human feces

Exposure Sources

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference

External Links

HMDB ID

HMDB0039093

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

C00000905

Chemspider ID

8138988

KEGG Compound ID

C05421

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Phytoene

METLIN ID

Not Available

PubChem Compound

9963391

PDB ID

Not Available

ChEBI ID

27787

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Khachik F, Beecher GR, Goli MB, Lusby WR, Smith JC Jr: Separation and identification of carotenoids and their oxidation products in the extracts of human plasma. Anal Chem. 1992 Sep 15;64(18):2111-22. doi: 10.1021/ac00042a016. [PubMed:1416048 ]
Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. doi: 10.1038/35036052. [PubMed:11413487 ]
Fraser PD, Bramley PM: The biosynthesis and nutritional uses of carotenoids. Prog Lipid Res. 2004 May;43(3):228-65. doi: 10.1016/j.plipres.2003.10.002. [PubMed:15003396 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. doi: 10.1194/jlr.R600022-JLR200. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. doi: 10.1194/jlr.R700005-JLR200. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
Yannai, Shmuel (2004). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. Boca Raton: Chapman & Hall/CRC..
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for 15-cis-phytoene (MMDBc0054149)

MOL for #<Metabolite:0x00007fdb4dd8deb8>

3D MOL for #<Metabolite:0x00007fdb4dd8deb8>

3D SDF for #<Metabolite:0x00007fdb4dd8deb8>

3D-SDF for #<Metabolite:0x00007fdb4dd8deb8>

PDB for #<Metabolite:0x00007fdb4dd8deb8>

3D PDB for #<Metabolite:0x00007fdb4dd8deb8>

SMILES for #<Metabolite:0x00007fdb4dd8deb8>

INCHI for #<Metabolite:0x00007fdb4dd8deb8>

Structure for #<Metabolite:0x00007fdb4dd8deb8>

3D Structure for #<Metabolite:0x00007fdb4dd8deb8>