MiMeDB: Bacillus subtilis (MMDBm0000031)

Microbe Identification

Microbe name

Bacillus subtilis

NCBI Taxonomy ID

1423

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Firmicutes

Class

Bacilli

Order

Bacillales

Family

Bacillaceae

Genus

Bacillus

Species

subtilis

Strain

Not Available

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Yes

Flagellar presence

Yes

Number of membranes

Oxygen preference

Facultative

Optimal temperature

Temperature range

Mesophilic

Habitat

HostAssociated

Biotic relationship

Free living

Cell arrangement

Not Available

Sporulation

Sporulating

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human			Not Available	Human Oral Microbiome Database (HOMD)	20624719
Human	Large intestine		Not Available	BacDive	34718743

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0013524	digallate	Gallic acid	Tannase	Not Available	RHEA	34755880
MMDBr0015230	Prephenate	3-[(4R)-4-Hydroxycyclohexa-1,5-dien-1-yl]-2-oxopropanoate	Prephenate decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0015270	3-[(4R)-4-Hydroxycyclohexa-1,5-dien-1-yl]-2-oxopropanoate	3-[(1E,4R)-4-hydroxycyclohex-2-en-1-ylidene]pyruvic acid	H2HPP isomerase	Isomerization	RHEA	34755880
MMDBr0016072	L-Alanine	Bacilysin	Alanine--anticapsin ligase	Ligation	RHEA	34755880
MMDBr0016094	L-Dihydroanticapsin	Anticapsin	Dihydroanticapsin 7-dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024460	S-Adenosylmethionine	S-Adenosylhomocysteine	Type II methyltransferase M.MthTI	Methylation	RHEA	34755880
MMDBr0024497	S-Adenosylmethionine	S-Adenosylhomocysteine	Type I restriction enzyme MjaVII methylase subunit	Methylation	RHEA	34755880
MMDBr0024545	S-Adenosylmethionine	S-Adenosylhomocysteine	Type II methyltransferase M.MwoI	Methylation	RHEA	34755880
MMDBr0024549	Myo-inositol hexakisphosphate	D-Myo-inositol 1,2,4,5,6-pentakisphosphate	3-phytase	Hydrolysis	RHEA	34755880
MMDBr0025016	Malonyl-CoA	CoA	Malonyl CoA-acyl carrier protein transacylase	Synthesis	RHEA	34755880
MMDBr0025091	S-Adenosylmethionine	S-Adenosylhomocysteine	rRNA adenine N-6-methyltransferase	Methylation	RHEA	34755880
MMDBr0025189	L-Arginine	Hydrogen Ion	L-arginine-specific L-amino acid ligase	Hydrolysis; Ligation	RHEA	34755880
MMDBr0025218	L-Serine	Adenosine 3',5'-diphosphate	Enterobactin synthase component D	Synthesis	RHEA	34755880
MMDBr0026113	L-Arginine	Arginyl-L-arginine	L-arginine-specific L-amino acid ligase	Hydrolysis; Ligation	RHEA	34755880
MMDBr0026114	L-Arginine	L-Argininyl-L-leucine	L-arginine-specific L-amino acid ligase	Hydrolysis; Ligation	RHEA	34755880
MMDBr0024502	Adenosine triphosphate	diphosphate	Long-chain-fatty-acid--CoA ligase FadD15	Hydrolysis; Ligation; Synthesis	RHEA	34755880
MMDBr0036096	tetradecanoate (n-C14:0)	Tetradecanoyl-CoA	Long-chain-fatty-acid--CoA ligase	Hydrolysis; Ligation; Synthesis	RHEA	34755880
MMDBr0036097	Octadecanoate (N-C18:0)	Stearoyl-CoA	Long-chain-fatty-acid--CoA ligase	Hydrolysis; Ligation; Synthesis	RHEA	34755880
MMDBr0036098	Octadecenoate (N-C18:1)	oleoyl-CoA	Long-chain-fatty-acid--CoA ligase	Hydrolysis; Ligation; Synthesis	RHEA	34755880
MMDBr0036099	Behenic acid	Docosanoyl-CoA	Long-chain-fatty-acid--CoA ligase	Hydrolysis; Ligation; Synthesis	RHEA	34755880
MMDBr0036100	(12R)-hydroxy-(9Z)-octadecenoic acid	(12R)-hydroxy-(9Z)-octadecenoyl-CoA	Long-chain-fatty-acid--CoA ligase	Hydrolysis; Ligation; Synthesis	RHEA	34755880
MMDBr0036134	tetradecanoate (n-C14:0)	3-Hydroxymyristate	Fatty-acid peroxygenase	Hydroxylation	RHEA	34755880
MMDBr0038698	Oleic acid	oleoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038699	Linoleic acid	Linoleoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038700	Arachidonic acid	Arachidonyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038701	alpha-Linolenic acid	Alpha-Linolenoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038702	Vaccenic acid	11E-Octadecenoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038703	Eicosapentaenoic acid	(5Z,8Z,11Z,14Z,17Z)-Icosapentaenoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038704	Myristoleic acid	(9Z)-tetradecenoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038705	Docosahexaenoic acid	Cervonyl Coenzyme A	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038706	Palmitoleic acid	Palmitoleyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038707	lignoceric acid	Tetracosanoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038708	Erucic acid	13Z-docosenoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0038709	cerotic acid	hexacosanoyl-CoA	Long-chain-fatty-acid--CoA ligase 1	Hydrolysis; Ligation	RHEA	34755880
MMDBr0026126	L-Alanine	D-Alanine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026127	L-Lysine	D-Lysine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026128	L-Serine	D-Serine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026129	L-Proline	D-Proline	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026130	L-Cysteine	D-Cysteine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026131	L-Glutamine	D-Glutamine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026132	L-Aspartic acid	D-Aspartic acid	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026133	L-Methionine	D-methionine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026134	L-Valine	D-Valine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026135	L-Phenylalanine	D-phenylalanine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026136	L-Tryptophan	D-Tryptophan	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026137	L-Leucine	D-Leucine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0026138	L-Tyrosine	D-Tyrosine	Broad substrate specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039017	L-Homoserine	D-homoserine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039018	L-Leucine	D-Leucine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039019	L-Phenylalanine	D-phenylalanine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039020	L-Proline	D-Proline	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039021	L-Threonine	D-Threonine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039022	L-Tyrosine	D-Tyrosine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039023	L-Valine	D-Valine	Broad specificity amino-acid racemase	Racemization	RHEA	34755880
MMDBr0039044	L-Arginine	Arginyl-L-arginine	L-arginine-specific L-amino acid ligase	Hydrolysis; Ligation	RHEA	34755880
MMDBr0039065	Behenic acid	2-hydroxydocosanoic acid	Fatty-acid peroxygenase	Hydroxylation	RHEA	34755880
MMDBr0039066	hexadecanoic acid	2-hydroxyhexadecanoic acid	Fatty-acid peroxygenase	Hydroxylation	RHEA	34755880
MMDBr0039067	Arachidic acid	2-hydroxyicosanoic acid	Fatty-acid peroxygenase	Hydroxylation	RHEA	34755880
MMDBr0039068	Octadecanoate (N-C18:0)	2-hydroxyoctadecanoic acid	Fatty-acid peroxygenase	Hydroxylation	RHEA	34755880
MMDBr0039069	tetradecanoate (n-C14:0)	(2S)-hydroxytetradecanoic acid	Fatty-acid peroxygenase	Hydroxylation	RHEA	34755880

Genome Data

Genome Link

MMDBm0000031

Genome Length

4275829 bp

# Predicted Proteins

4375

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-28 03:47:43 UTC

Reference

PMID: 17704766

Source Links

GenBank

NC_000964