MiMeDB: Pseudomonas fluorescens (MMDBm0000332)

Microbe Identification

Microbe name

Pseudomonas fluorescens

NCBI Taxonomy ID

294

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Proteobacteria

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Species

fluorescens

Strain

Not Available

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Yes

Flagellar presence

Yes

Number of membranes

Oxygen preference

Aerobe

Optimal temperature

Temperature range

Mesophilic

Habitat

Multiple

Biotic relationship

Free living

Cell arrangement

Singles

Sporulation

Singles

Metabolism

Not Available

Energy source

Heterotroph

Host and Biospecimens

Host	Body site	Biospecimen	Data Source	Reference
Human			Human Oral Microbiome Database (HOMD)	20624719
Human	Lower respiratory tract		BacDive	34718743
Human	Lower respiratory tract		BacDive	34718743
Human	Gingiva	Subgingival plaque	Disbiome	31329044

Health Effects

Host	Related Health Condition	Microbal response/effect	Data Source	Reference
Human	Cystic fibrosis		BacDive
Human	Cystic fibrosis		BacDive
Human	Cystic fibrosis		BacDive
Human	Cystic fibrosis		BacDive
Human	Periodontal disease	Reduced	Disbiome	31329044

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0013045	Alpha-D-glucose 6-phosphate	beta-D-Fructose 6-phosphate	Glucose-6-phosphate isomerase	Isomerization	RHEA	34755880
MMDBr0013110	D-mannose 6-phosphate	Fructose 6-phosphate	Alginate biosynthesis protein AlgA	Isomerization	RHEA	34755880
MMDBr0013124	2-amino-2-deoxy-D-gluconic acid	2-Dehydro-3-deoxy-D-gluconate	Glucosaminate ammonia-lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0013172	N-Formyl-L-kynurenine	formate	Kynurenine formamidase	Amide hydrolysis	RHEA	34755880
MMDBr0013173	Uridine 5'-monophosphate	Phosphoribosyl pyrophosphate	Bifunctional protein PyrR	Transfer of phosphoribosyl group	RHEA	34755880
MMDBr0013206	Vanillin	4-hydroxy-3-methoxybenzoic acid	Benzaldehyde dehydrogenase YfmT	Dehydrogenation	RHEA	34755880
MMDBr0013307	Riboflavin	Flavin mononucleotide	Bifunctional riboflavin kinase/FMN adenylyltransferase	Phosphorylation	RHEA	34755880
MMDBr0013345	D-Erythrose 4-phosphate	3-deoxy-D-arabino-heptulosonate-7-phosphate	Phospho-2-dehydro-3-deoxyheptonate aldolase AMT16	Aldol addition (or reverse)	RHEA	34755880
MMDBr0013389	Meso-2,6-Diaminoheptanedioate	L-Lysine	Diaminopimelate decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0013404	alpha-D-mannose 1-phosphate	Guanosine diphosphate mannose	Alginate biosynthesis protein AlgA	Synthesis	RHEA	34755880
MMDBr0013422	LL-2,6-Diaminoheptanedioate	Meso-2,6-Diaminoheptanedioate	Diaminopimelate epimerase	Epimerization; Racemization	RHEA	34755880
MMDBr0013548	L-Aspartic acid	fumarate	Aspartate ammonia-lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0013559	Phosphonoacetate	Acetic acid	Phosphonoacetate hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0013570	L-Kynurenine	2-Aminobenzoic acid	Kynureninase	Cleavage of kynurenine	RHEA	34755880
MMDBr0013588	1-aminocyclopropane-1-carboxylic acid	2-oxobutanoic acid	1-aminocyclopropane-1-carboxylate deaminase	Deamination	RHEA	34755880
MMDBr0013706	3-Hydroxyanthranilic acid	(2Z,4Z)-2-amino-3-carboxymuconic acid 6-semialdehyde	3-hydroxyanthranilate 3,4-dioxygenase	Oxygenation	RHEA	34755880
MMDBr0013735	glyoxylate	(S)-malate(2-)	Malate synthase	Synthesis	RHEA	34755880
MMDBr0013845	naphthalene	(1R,2S)-1,2-dihydronaphthalene-1,2-diol	Naphthalene 1,2-dioxygenase system, large oxygenase component	Oxygenation	RHEA	34755880
MMDBr0013880	4-Hydroxybenzoic acid	3,4-dihydroxybenzoic acid	p-hydroxybenzoate-m-hydroxylase A	Hydroxylation; Oxygenation	RHEA	34755880
MMDBr0013884	L-Aspartic acid	beta-Alanine	L-aspartate decarboxylase dtxS4	Decarboxylation	RHEA	34755880
MMDBr0013908	Guanosine triphosphate	Guanosine diphosphate	GTPase ArgK	Dephosphorylation; Hydrolysis; Nucleic acid synthesis and/or repair	RHEA	34755880
MMDBr0013970	L-Alanine	D-Alanine	L-alanine/L-glutamate racemase	Racemization	RHEA	34755880
MMDBr0014001	L-Kynurenine	L-3-Hydroxykynurenine	Kynurenine 3-monooxygenase	Oxygenation	RHEA	34755880
MMDBr0014086	D-Galactose	D-galactono-1,4-lactone	L-arabinose 1-dehydrogenase (NAD(P)(+))	Dehydrogenation	RHEA	34755880
MMDBr0014098	Phenylacetaldehyde	2-phenylacetic acid	Phenylacetaldehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014106	benzoin	Benzaldehyde	Benzaldehyde lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0014120	styrene oxide	Phenylacetaldehyde	Styrene-oxide isomerase	Isomerization	RHEA	34755880
MMDBr0014272	4'-hydroxyacetophenone	4-acetoxyphenol	4-hydroxyacetophenone monooxygenase	Oxygenation	RHEA	34755880
MMDBr0014390	Hg	Hg(2+)	Mercuric reductase	Reduction	RHEA	34755880
MMDBr0014517	L-3-Hydroxykynurenine	3-Hydroxyanthranilic acid	Kynureninase	Cleavage of kynurenine	RHEA	34755880
MMDBr0017927	L-Tryptophan	7-chloro-L-tryptophan	Flavin-dependent tryptophan halogenase PrnA	Chlorination; Halocyclization	RHEA	34755880
MMDBr0014668	6-Hydroxynicotinic acid	2,5-dihydroxypyridine	6-hydroxynicotinate 3-monooxygenase	Oxygenation	RHEA	34755880
MMDBr0014796	(5S,6S)-6-amino-5-hydroxycyclohexa-1,3-diene-1-carboxyate	(1R,6S)-6-Amino-5-oxocyclohex-2-ene-1-carboxylate	Trans-2,3-dihydro-3-hydroxyanthranilate isomerase	Isomerization	RHEA	34755880
MMDBr0015074	Styrene	(2S)-2-phenyloxirane	Styrene monooxygenase StyA	Oxygenation	RHEA	34755880
MMDBr0015149	S-Adenosylmethionine	Precorrin-2	Siroheme synthase	Methylation; Synthesis	RHEA	34755880
MMDBr0015150	S-Adenosylmethionine	Precorrin-2	Uroporphyrinogen-III C-methyltransferase	Methylation	RHEA	34755880
MMDBr0015220	(2Z,4E)-2-hydroxyhexa-2,4-dienedioic acid	(3E)-2-oxohex-3-enedioate	2-hydroxymuconate tautomerase	Ketonization	RHEA	34755880
MMDBr0015490	(E)-caffeoyl-CoA	3,4-dihydroxybenzaldehyde	Hydroxycinnamoyl-CoA hydratase-lyase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0015889	Nitrogen	Nitrous oxide	Nitrous-oxide reductase	Reduction	RHEA	34755880
MMDBr0016237	WB2838	Pyrrolnitrin	Aminopyrrolnitrin oxygenase PrnD	Oxygenation	RHEA	34755880
MMDBr0016450	2-Amino-2-deoxyisochorismate	(5S,6S)-6-amino-5-hydroxycyclohexa-1,3-diene-1-carboxyate	Phenazine biosynthesis protein PhzD	Synthesis	RHEA	34755880
MMDBr0016483	(1R,6R)-1,4,5,5a,6,9-hexahydrophenazine-1,6-dicarboxylic acid	(1R,10aS)-1,4,10,10a-tetrahydrophenazine-1,6-dicarboxylic acid	Dihydrophenazinedicarboxylate synthase	Synthesis	RHEA	34755880
MMDBr0016484	(1R,6R)-1,4,5,5a,6,9-hexahydrophenazine-1,6-dicarboxylic acid	(1R,10aS)-1,4,10,10a-tetrahydrophenazine-1,6-dicarboxylic acid	Dihydrophenazinedicarboxylate synthase	Synthesis	RHEA	34755880
MMDBr0016485	(1R,10aS)-1,4,10,10a-tetrahydrophenazine-1,6-dicarboxylic acid	(5aS)-5,5a-dihydrophenazine-1,6-dicarboxylic acid	Dihydrophenazinedicarboxylate synthase	Synthesis	RHEA	34755880
MMDBr0016486	(1R,10aS)-1,4,10,10a-tetrahydrophenazine-1,6-dicarboxylic acid	(5aS)-5,5a-dihydrophenazine-1,6-dicarboxylic acid	Dihydrophenazinedicarboxylate synthase	Synthesis	RHEA	34755880
MMDBr0016487	(1R,10aS)-1,4,10,10a-tetrahydrophenazine-1-carboxylic acid	(10aS)-10,10a-Dihydrophenazine-1-carboxylate	Dihydrophenazinedicarboxylate synthase	Synthesis	RHEA	34755880
MMDBr0016488	(1R,10aS)-1,4,10,10a-tetrahydrophenazine-1-carboxylic acid	(10aS)-10,10a-Dihydrophenazine-1-carboxylate	Dihydrophenazinedicarboxylate synthase	Synthesis	RHEA	34755880
MMDBr0016489	(1R)-1,4,5,10-Tetrahydrophenazine-1-carboxylate	(10aS)-10,10a-Dihydrophenazine-1-carboxylate	Dihydrophenazinedicarboxylate synthase	Synthesis	RHEA	34755880
MMDBr0016490	(1R)-1,4,5,10-Tetrahydrophenazine-1-carboxylate	(10aS)-10,10a-Dihydrophenazine-1-carboxylate	Dihydrophenazinedicarboxylate synthase	Synthesis	RHEA	34755880
MMDBr0016511	Malonyl-CoA	1,3,5-trihydroxybenzene	Phloroglucinol synthase	Synthesis	RHEA	34755880
MMDBr0016982	2,4-Diacetylphloroglucinol	2-acetylphloroglucinol	2,4-diacetylphloroglucinol hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0017229	(E)-feruloyl-CoA	Vanillin	Hydroxycinnamoyl-CoA hydratase-lyase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0017230	(E)-4-coumaroyl-CoA	4-Hydroxybenzaldehyde	Hydroxycinnamoyl-CoA hydratase-lyase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0017716	(S)-2-chloropropanoic acid	D-Lactic acid	(S)-2-haloacid dehalogenase	Dehalogenation	RHEA	34755880
MMDBr0017746	peracetic acid	Acetic acid	Bifunctional esterase/perhydrolase DCH	Hydrolysis of bond	RHEA	34755880
MMDBr0017895	L-Histidine	Histamine	Histidine decarboxylase	Carboxylation	RHEA	34755880
MMDBr0017905	Chorismate	2-Aminobenzoic acid	Aminodeoxychorismate/anthranilate synthase component 2	Synthesis	RHEA	34755880
MMDBr0017914	L-Tryptophan	N-Formyl-L-kynurenine	Indoleamine 2,3-dioxygenase nanC	Oxygenation	RHEA	34755880
MMDBr0024341	S-Adenosylmethionine	5'-Methylthioadenosine	Acyl-homoserine-lactone synthase	Synthesis	RHEA	34755880
MMDBr0024368	L-Isoleucine	diphosphate	Isoleucine--tRNA ligase	Ligation	RHEA	34755880
MMDBr0024420	Glycerol 3-phosphate	CMP	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	Synthesis	RHEA	34755880
MMDBr0024471	L-Methionine	L-Cysteine	Peptide methionine sulfoxide reductase MsrA	Reduction	RHEA	34755880
MMDBr0024493	NAD	Hydrogen Ion	Dihydrolipoyl dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024644	L-Cystine	L-Cysteine	Peptide methionine sulfoxide reductase MsrA	Reduction	RHEA	34755880
MMDBr0024782	di-mu-Sulfido-diiron(2+)	di-mu-Sulfido-diiron(1+)	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	Reduction	RHEA	34755880
MMDBr0024789	di-mu-Sulfido-diiron(2+)	di-mu-Sulfido-diiron(1+)	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	Reduction	RHEA	34755880
MMDBr0024871	NAD	Hydrogen Ion	NADH-dependent flavin reductase StyB	Reduction	RHEA	34755880
MMDBr0025072	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (uracil(54)-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025152	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA/tmRNA (uracil-C(5))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025214	(S)-malate(2-)	Oxalacetic acid	Probable malate:quinone oxidoreductase	Redox reaction	RHEA	34755880
MMDBr0025367	7-chloro-L-tryptophan	monodechloroaminopyrrolnitrin	Monodechloroaminopyrrolnitrin synthase PrnB	Synthesis	RHEA	34755880
MMDBr0025650	Hydrogen Ion	Hydrogen Ion	NADH-quinone oxidoreductase subunit C/D	Redox reaction	RHEA	34755880

Genome Data

Genome Link

MMDBm0000332

Genome Length

6604570 bp

# Predicted Proteins

6216

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-25 17:33:41 UTC

Reference

PMID: 17704766

Source Links

GenBank

NZ_LT907842