MiMeDB: Sphingobium sp. SYK-6 (MMDBm0002159)

Microbe Identification

Microbe name

Sphingobium sp. SYK-6

NCBI Taxonomy ID

627192

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Proteobacteria

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingobium

Species

sp. SYK-6

Strain

Not Available

Microbe Properties

Gram staining properties

Positive

Shape

Not Available

Mobility

Not Available

Flagellar presence

Not Available

Number of membranes

Not Available

Oxygen preference

Not Available

Optimal temperature

Not Available

Temperature range

Not Available

Habitat

Not Available

Biotic relationship

Not Available

Cell arrangement

Not Available

Sporulation

Not Available

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012924	2-oxo-2H-pyran-4,6-dicarboxylic acid	(1E)-4-oxobut-1-ene-1,2,4-tricarboxylic acid	2-pyrone-4,6-dicarbaxylate hydrolase	Hydrolysis of bond	RHEA	34755880
MMDBr0013449	Hydrogen Ion	Carbon dioxide	4-hydroxy-4-methyl-2-oxoglutarate aldolase/4-carboxy-4-hydroxy-2-oxoadipate aldolase	Aldol addition (or reverse); Decarboxylation; Redox reaction	RHEA	34755880
MMDBr0013450	Hydrogen Ion	Carbon dioxide	4-carboxy-4-hydroxy-2-oxoadipate aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0013922	(6S)-5-methyl-5,6,7,8-tetrahydrofolic acid	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	5,10-methylenetetrahydrofolate reductase	Methylation; Reduction	RHEA	34755880
MMDBr0013923	(6S)-5-methyl-5,6,7,8-tetrahydrofolic acid	(6R)-5,10-methylene-5,6,7,8-tetrahydrofolic acid	5,10-methylenetetrahydrofolate reductase	Methylation; Reduction	RHEA	34755880
MMDBr0013966	(6S)-5,6,7,8-tetrahydrofolic acid	(6S)-10-formyltetrahydrofolic acid	C-1-tetrahydrofolate synthase, cytoplasmic	Ligation; Synthesis	RHEA	34755880
MMDBr0014244	4-hydroxy-4-methyl-2-oxoglutarate	Pyruvic acid	4-hydroxy-4-methyl-2-oxoglutarate aldolase cghB	Aldol addition (or reverse)	RHEA	34755880
MMDBr0014409	3,4-dihydroxybenzoic acid	4-carboxy-2-hydroxy-cis,cis-muconic acid 6-semialdehyde	Protocatechuate 4,5-dioxygenase alpha chain	Oxygenation	RHEA	34755880
MMDBr0014881	2-hydroxy-4-oxobutane-1,2,4-tricarboxylic acid	Oxalacetic acid	4-carboxy-4-hydroxy-2-oxoadipic acid aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0014882	2-hydroxy-4-oxobutane-1,2,4-tricarboxylic acid	Oxalacetic acid	4-carboxy-4-hydroxy-2-oxoadipate aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0014924	4-carboxy-2-hydroxymuconic acid semialdehyde hemiacetal	2-oxo-2H-pyran-4,6-dicarboxylic acid	4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0016579	(6S)-5,6,7,8-tetrahydrofolic acid	(6S)-5-methyl-5,6,7,8-tetrahydrofolic acid	Vanillate/3-O-methylgallate O-demethylase	Demethylation	RHEA	34755880
MMDBr0016580	(6S)-5,6,7,8-tetrahydrofolic acid	(6S)-5-methyl-5,6,7,8-tetrahydrofolic acid	Vanillate/3-O-methylgallate O-demethylase	Demethylation	RHEA	34755880
MMDBr0016581	(6S)-5,6,7,8-tetrahydrofolic acid	(6S)-5-methyl-5,6,7,8-tetrahydrofolic acid	Vanillate/3-O-methylgallate O-demethylase	Demethylation	RHEA	34755880
MMDBr0016582	(6S)-5,6,7,8-tetrahydrofolic acid	(6S)-5-methyl-5,6,7,8-tetrahydrofolic acid	Vanillate/3-O-methylgallate O-demethylase	Demethylation	RHEA	34755880
MMDBr0016857	5,5'-dehydrodivanillic acid	2,2',3-trihydroxy-3'-methoxy-5,5'-dicarboxybiphenyl	5,5'-dehydrodivanillate O-demethylase oxygenase subunit	Demethylation	RHEA	34755880
MMDBr0016935	(3Z)-2-oxo-4-carboxy-3-hexenedioic acid	(2S)-2-hydroxy-4-oxobutane-1,2,4-tricarboxylic acid	2-keto-4-carboxy-3-hexenedioate hydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0017024	(6S)-5,6,7,8-tetrahydrofolic acid	(6S)-5-methyl-5,6,7,8-tetrahydrofolic acid	Syringate O-demethylase	Demethylation	RHEA	34755880

Genome Data

Genome Link

Not Available

Genome Length

Not Available

# Predicted Proteins

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

Reference

PMID: 17704766

Source Links

GenBank