MiMeDB: Myxococcus xanthus (MMDBm0511356)

Microbe Identification

Microbe name

Myxococcus xanthus

NCBI Taxonomy ID

Microbe Taxonomy

Superkingdom

Bacteria

Kingdom

Eubacteria

Phylum

Proteobacteria

Class

Deltaproteobacteria

Order

Myxococcales

Family

Myxococcaceae

Genus

Myxococcus

Species

xanthus

Strain

Not Available

Microbe Properties

Gram staining properties

Positive

Shape

Cocci

Mobility

Not Available

Flagellar presence

Not Available

Number of membranes

Not Available

Oxygen preference

Not Available

Optimal temperature

Not Available

Temperature range

Not Available

Habitat

Not Available

Biotic relationship

Not Available

Cell arrangement

Not Available

Sporulation

Not Available

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0013395	Pyridoxine 5'-phosphate	Hydrogen peroxide	Probable pyridoxamine 5'-phosphate oxidase	Oxidation	RHEA	34755880
MMDBr0013466	Pyridoxamine 5'-phosphate	Hydrogen peroxide	Probable pyridoxamine 5'-phosphate oxidase	Oxidation	RHEA	34755880
MMDBr0013475	N2-Acetylornithine	Acetic acid	N-acetyl-L-citrulline deacetylase	Deacetylation	RHEA	34755880
MMDBr0013564	Potassium	Potassium	Potassium-transporting ATPase ATP-binding subunit	ATP hydrolysis	RHEA	34755880
MMDBr0013565	Potassium	Potassium	Potassium-transporting ATPase ATP-binding subunit	ATP hydrolysis	RHEA	34755880
MMDBr0013717	alpha-Ketoglutarate	L-Glutamic acid	Acetylornithine aminotransferase	Amine group addition	RHEA	34755880
MMDBr0014105	(S)-malate(2-)	Oxalacetic acid	Malate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014171	Guanosine triphosphate	Guanosine 3'-diphosphate 5'-triphosphate	GTP pyrophosphokinase	Hydrolysis of bond; Phosphorylation	RHEA	34755880
MMDBr0014372	Hydrogen carbonate	(S)-Methylmalonyl-CoA	Propionyl-CoA carboxylase, biotin carboxylase and biotin-carboxyl carrier subunit	Carboxylation	RHEA	34755880
MMDBr0014373	Hydrogen carbonate	(S)-Methylmalonyl-CoA	Propionyl-CoA carboxylase, biotin carboxylase and biotin-carboxyl carrier subunit	Carboxylation	RHEA	34755880
MMDBr0014563	Protoporphyrinogen IX	Hydrogen peroxide	Coproporphyrinogen III oxidase	Oxidation	RHEA	34755880
MMDBr0014564	Protoporphyrinogen IX	Hydrogen peroxide	Coproporphyrinogen III oxidase	Oxidation	RHEA	34755880
MMDBr0017168	1-O-(13-methyltetradecyl)-2-(13-methyltetradecanoyl)-sn-glycero-3-phosphoethanolamine	1-O-(1Z-13-methyltetradecenyl)-2-(13-methyltetradecanoyl)-sn-glycero-3-phosphoethanolamine	Plasmanylethanolamine desaturase	Desaturation	RHEA	34755880
MMDBr0017169	1-O-(13-methyltetradecyl)-2-(13-methyltetradecanoyl)-sn-glycero-3-phosphoethanolamine	1-O-(1Z-13-methyltetradecenyl)-2-(13-methyltetradecanoyl)-sn-glycero-3-phosphoethanolamine	Plasmanylethanolamine desaturase	Desaturation	RHEA	34755880
MMDBr0017897	L-Methionine	S-Adenosylmethionine	S-adenosylmethionine synthase	Synthesis	RHEA	34755880
MMDBr0024586	L-Serine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0024590	Adenosine triphosphate	ADP	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0024724	Hydrogen Ion	Water	Plasmanylethanolamine desaturase	Desaturation	RHEA	34755880
MMDBr0024725	Hydrogen Ion	Water	Plasmanylethanolamine desaturase	Desaturation	RHEA	34755880
MMDBr0024781	S-Adenosylmethionine	S-Adenosylhomocysteine	Chemotaxis protein methyltransferase	Methylation	RHEA	34755880
MMDBr0024863	15-cis-phytoene	all-trans-zeta-carotene	zeta-carotene-forming phytoene desaturase	Desaturation	RHEA	34755880
MMDBr0024864	all-trans-zeta-carotene	Lycopene	All-trans-zeta-carotene desaturase	Desaturation	RHEA	34755880
MMDBr0025193	Adenosine triphosphate	ADP	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0025237	L-Threonine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0026046	Uridine 5'-diphosphate	Uridine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026047	Uridine 5'-diphosphate	Cytidine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026048	Guanosine 3',5'-bis(diphosphate)	Guanosine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026085	Deoxyuridine-5'-diphosphate	Deoxyuridine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026086	2'-Deoxycytidine 5'-diphosphate	Deoxycytidine 5'-triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026087	2'-Deoxyadenosine 5'-diphosphate	Deoxyadenosine triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0026088	2'-Deoxyguanosine 5'-diphosphate	2'-Deoxyguanosine 5'-triphosphate	Nucleoside diphosphate kinase	Phosphorylation	RHEA	34755880

Genome Data

Genome Link

Not Available

Genome Length

Not Available

# Predicted Proteins

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

Reference

PMID: 17704766

Source Links

GenBank