| MMDBm0001166 | Achromobacter xylosoxidans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0480821 | Achromobacter xylosoxidans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000003 | Acidaminococcus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0516511 | Aeromonas caviae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000010 | Aeromonas jandaei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0516564 | Aeromonas media | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001199 | Aeromonas veronii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000012 | Agrobacterium tumefaciens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000016 | Alcaligenes faecalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0481922 | Alcaligenes faecalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000020 | Anaerococcus prevotii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0810309 | Anaerococcus vaginalis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0766846 | Aneurinibacillus aneurinilyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000023 | Arcobacter butzleri | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000024 | Bacillus altitudinis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001274 | amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000025 | Bacillus amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730668 | Bacillus atrophaeus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001257 | Bacillus clausii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730439 | Bacillus endophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0761185 | Cytobacillus firmus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730452 | Bacillus flexus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730456 | Bacillus fordii | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000028 | Bacillus halodurans | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730482 | Bacillus infantis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001255 | Bacillus licheniformis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001269 | Bacillus megaterium | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730692 | Bacillus mojavensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730533 | Bacillus nealsonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730563 | Bacillus pumilus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730698 | Bacillus sonorensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001248 | Bacillus subtilis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730891 | Bacillus thermoamylovorans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730186 | Bacillus thuringiensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000032 | Bacillus timonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000033 | Bacillus vallismortis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0514239 | Campylobacter ureolyticus | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000094 | Blautia obeum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802311 | Blautia wexlerae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0482767 | Bordetella hinzii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000095 | Bradyrhizobium elkanii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0423522 | Bradyrhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0766910 | Brevibacillus agri | Eubacteria | Firmicutes | Aerobe |
| MMDBm0766911 | Brevibacillus agri | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000096 | Brevibacillus borstelensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000097 | Brevibacillus brevis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0663577 | Brevibacterium casei | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0663594 | Brevibacterium linens | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0417443 | Brevundimonas bacteroides | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0417451 | Brevundimonas diminuta | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0483496 | Burkholderia cepacia | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0798353 | Butyricicoccus pullicaecorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000100 | Campylobacter fetus | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0513982 | Campylobacter gracilis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0513988 | Campylobacter hyointestinalis | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0001373 | Campylobacter lari | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0514216 | Campylobacter rectus | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0514218 | Campylobacter showae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001417 | Clostridium lentocellum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000882 | Cetobacterium somerae | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0000107 | Cloacibacillus evryensis | Eubacteria | Synergistetes | Anaerobe |
| MMDBm0000114 | acetobutylicum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000116 | beijerinckii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805019 | Paraclostridium bifermentans | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000120 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001459 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001460 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000121 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798609 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000122 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798785 | Clostridium cadaveris | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798796 | Clostridium celatum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802145 | Ruminiclostridium cellobioparum | Eubacteria | Firmicutes | |
| MMDBm0802708 | Enterocloster citroniae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802089 | Hungateiclostridium clariflavum | Eubacteria | Firmicutes | |
| MMDBm0000125 | Enterocloster clostridioformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805202 | Terrisporobacter glycolicus | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0801127 | Hungatella hathewayi | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0801128 | Hungatella hathewayi | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0802992 | Lacrimispora indolis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802894 | Clostridium methoxybenzovorans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798898 | Clostridium paraputrificum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000132 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808655 | Clostridium saccharogumia | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798939 | Clostridium sartagoforme | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805008 | Paeniclostridium sordellii | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0806093 | Clostridium sporosphaeroides | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001473 | Clostridium sticklandii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802901 | Clostridium symbiosum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0798974 | Clostridium tyrobutyricum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806095 | Clostridium viride | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001480 | testosteroni | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000143 | Coprococcus catus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001529 | Delftia acidovorans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0786754 | Enterococcus cecorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000688 | Enterococcus saccharolyticus | Eubacteria | Firmicutes | |
| MMDBm0806711 | Eubacterium brachy | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0801642 | Eubacterium cellulosolvens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805392 | Agathobaculum desmolans | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000171 | Eubacterium eligens ATCC 27750 | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001104 | Anaerobutyricum hallii | Eubacteria | Firmicutes | |
| MMDBm0000172 | Eubacterium limosum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806718 | Eubacterium saphenum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806720 | Eubacterium sulci | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0784143 | Exiguobacterium aurantiacum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0805488 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805490 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000181 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001614 | Finegoldia magna | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805538 | Flavonifractor plautii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000185 | Fusobacterium nucleatum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0416256 | Fusobacterium russii | Eubacteria | Fusobacteria | Microaerophile |
| MMDBm0761343 | Geobacillus stearothermophilus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0761370 | Geobacillus vulcani | Eubacteria | Firmicutes | Aerobe |
| MMDBm0810781 | Kallipyga massiliensis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802953 | Lachnospira multipara | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0491302 | Lautropia mirabilis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001779 | Leptotrichia buccalis | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0763254 | Lysinibacillus fusiformis | Eubacteria | Firmicutes | |
| MMDBm0001794 | Lysinibacillus sphaericus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0809098 | Megamonas funiformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0435884 | Methylobacterium mesophilicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0505748 | Methyloversatilis universalis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0505746 | Methyloversatilis universalis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0809111 | Mitsuokella jalaludinii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0806691 | Mogibacterium timidum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0651046 | Mycobacterium avium | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0657325 | Mycolicibacterium fortuitum | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0764325 | Oceanobacillus picturae | Eubacteria | Firmicutes | |
| MMDBm0000226 | Paenibacillus alvei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000227 | Paenibacillus barengoltzii | Eubacteria | Firmicutes | |
| MMDBm0000228 | Paenibacillus daejeonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0767930 | Paenibacillus graminis | Eubacteria | Firmicutes | |
| MMDBm0767965 | Paenibacillus lactis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0453897 | Paracoccus yeei | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0810478 | Peptoniphilus harei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0810484 | Peptoniphilus lacrimalis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0810498 | Peptoniphilus timonensis | Eubacteria | Firmicutes | |
| MMDBm0805074 | Peptostreptococcus anaerobius | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805078 | Peptostreptococcus stomatis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0558122 | Proteus penneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0803106 | Pseudobutyrivibrio ruminis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0580255 | Pseudomonas alcaliphila | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580585 | Pseudomonas monteilii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580586 | Pseudomonas monteilii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580229 | Pseudomonas nitroreducens | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580236 | Pseudomonas oleovorans | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0658815 | Rhodococcus hoagii | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0658861 | Rhodococcus rhodochrous | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0461764 | Roseomonas mucosa | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002484 | Ruminococcus albus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001105 | Ruminococcus callidus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805711 | Ruminococcus flavefaciens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805712 | Ruminococcus flavefaciens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805717 | Ruminococcus gauvreauii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0639412 | Schlesneria paludicola | Eubacteria | Planctomycetes | Facultative anaerobe |
| MMDBm0809204 | Selenomonas ruminantium | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0774772 | Staphylococcus arlettae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002566 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000633 | Staphylococcus capitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779391 | Staphylococcus capitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779389 | Staphylococcus capitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779406 | Staphylococcus cohnii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002562 | Staphylococcus epidermidis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779527 | Staphylococcus equorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002563 | Staphylococcus haemolyticus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779540 | Staphylococcus hominis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002575 | Staphylococcus lugdunensis | Eubacteria | Firmicutes | Aerobe; anaerobe |
| MMDBm0779566 | Staphylococcus pasteuri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779569 | Staphylococcus pettenkoferi | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002564 | Staphylococcus saprophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0774625 | Mammaliicoccus sciuri | Eubacteria | Firmicutes | |
| MMDBm0779587 | Staphylococcus simulans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0774633 | Mammaliicoccus vitulinus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779599 | Staphylococcus warneri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779602 | Staphylococcus xylosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779603 | Staphylococcus xylosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0626730 | Stenotrophomonas rhizophila | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0794438 | Streptococcus australis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794539 | Streptococcus infantis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794581 | Streptococcus mitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002630 | Streptococcus oralis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794814 | Streptococcus peroris | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002610 | Streptococcus pneumoniae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002633 | Streptococcus pseudopneumoniae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002614 | Streptococcus uberis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0552405 | Trabulsiella guamensis | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0774233 | Ureibacillus thermosphaericus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0809729 | Veillonella atypica | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809739 | Veillonella dispar | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0809759 | Veillonella seminalis | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0610806 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0610808 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0610810 | Vibrio fluvialis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0552432 | Yokenella regensburgei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000464 | Bacillus mycoides | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000767 | Bacillus pseudofirmus | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0000923 | Bacteroides nordii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0001052 | Clostridium saccharoperbutylacetonicum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0658814 | Rhodococcus hoagii | Eubacteria | Actinobacteria | |
| MMDBm0772876 | Kurthia massiliensis | Eubacteria | Firmicutes | Aerobe |