| MMDBm0785739 | Abiotrophia defectiva | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0646422 | Schaalia odontolytica | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000009 | Adlercreutzia equolifaciens | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000015 | Akkermansia muciniphila | Eubacteria | Verrucomicrobia | Anaerobe |
| MMDBm0001264 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000045 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000046 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000047 | Bacteroides fragilis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000055 | thetaiotaomicron | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000057 | Bacteroides vulgatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393007 | Barnesiella intestinihominis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000079 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0001371 | Campylobacter concisus | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0001370 | Campylobacter curvus | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0000101 | Campylobacter hominis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0001368 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0514117 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0002282 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0001367 | Campylobacter jejuni | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0001450 | Citrobacter koseri | Eubacteria | Proteobacteria | Facultatively anaerobe |
| MMDBm0001470 | Clostridium difficile | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000112 | Clostridioides difficile | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000150 | Eggerthella lenta | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0002278 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001575 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001593 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000173 | Eubacterium rectale | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000175 | Eubacterium rectale | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001685 | Helicobacter pylori | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001737 | Lactobacillus acidophilus | Eubacteria | Firmicutes | Anaerobe; microaerophile |
| MMDBm0001739 | Lactobacillus delbrueckii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001747 | Limosilactobacillus fermentum | Eubacteria | Firmicutes | Facultative anaerobe; microaerophile |
| MMDBm0001743 | Lactobacillus gasseri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001745 | Lactobacillus helveticus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002092 | Lactobacillus johnsonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001735 | Lactobacillus johnsonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001751 | Lactiplantibacillus plantarum | Eubacteria | Firmicutes | Microaerophilic |
| MMDBm0766676 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001784 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766572 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766585 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766588 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766709 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766729 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766731 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0766734 | Listeria monocytogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002107 | Megasphaera elsdenii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000218 | Methanobrevibacter smithii | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0001846 | Methanosphaera stadtmanae | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0000232 | Parabacteroides distasonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0002369 | Porphyromonas gingivalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394038 | Prevotella stercorea | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0580104 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000257 | Roseburia hominis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002619 | Streptococcus equi | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000287 | Veillonella parvula | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001035 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
