| MMDBm0000010 | Aeromonas jandaei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000020 | Anaerococcus prevotii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802249 | Anaerostipes caccae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802250 | Anaerostipes hadrus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000021 | Anaerostipes caccae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000025 | Bacillus amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730439 | Bacillus endophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730452 | Bacillus flexus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001269 | Bacillus megaterium | Eubacteria | Firmicutes | Aerobe |
| MMDBm0648137 | Bifidobacterium pseudocatenulatum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000092 | Blautia hansenii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802304 | Blautia producta | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0665201 | Brachybacterium paraconglomeratum | Eubacteria | Actinobacteria | Aerobe, microaerophile |
| MMDBm0002325 | Butyrivibrio fibrisolvens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808557 | Catenibacterium mitsuokai | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0533363 | Cedecea davisae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001417 | Clostridium lentocellum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000882 | Cetobacterium somerae | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0533412 | Citrobacter amalonaticus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000105 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533435 | Citrobacter freundii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533439 | Citrobacter portucalensis | Eubacteria | Proteobacteria | |
| MMDBm0533444 | Citrobacter youngae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001146 | Clostridiales bacterium 1_7_47FAA | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0805001 | Intestinibacter bartlettii | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0798782 | Clostridium butyricum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802708 | Enterocloster citroniae | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000125 | Enterocloster clostridioformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0801127 | Hungatella hathewayi | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0801128 | Hungatella hathewayi | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000132 | Clostridium perfringens | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001094 | Erysipelatoclostridium ramosum | Eubacteria | Firmicutes | |
| MMDBm0808655 | Clostridium saccharogumia | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0800387 | Clostridium sp. SS2/1 | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808617 | Coprobacillus sp. D7 | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802609 | Coprococcus comes | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802611 | Coprococcus eutactus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802657 | Dorea longicatena | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000194 | Klebsiella aerogenes | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0553036 | Enterobacteriaceae bacterium 9_2_54FAA | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001584 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001593 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001583 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0533123 | Atlantibacter hermannii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0543470 | Escherichia sp. 1_1_43 | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0543506 | Escherichia sp. 4_1_40B | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000171 | Eubacterium eligens ATCC 27750 | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802216 | Anaerobutyricum hallii | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0001104 | Anaerobutyricum hallii | Eubacteria | Firmicutes | |
| MMDBm0000173 | Eubacterium rectale | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000175 | Eubacterium rectale | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805488 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000180 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805490 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000181 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0416194 | Fusobacterium mortiferum | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0557502 | Hafnia alvei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0544527 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0808774 | Kandleria vitulina | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0544716 | Klebsiella pneumoniae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001067 | Klebsiella variicola | Eubacteria | Proteobacteria | |
| MMDBm0802953 | Lachnospira multipara | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001156 | Lachnospiraceae bacterium 5_1_63FAA | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001740 | brevis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792655 | Lactobacillus brevis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001741 | Lactobacillus casei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001748 | Lactobacillus casei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792769 | Limosilactobacillus oris | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0790274 | Lacticaseibacillus paracasei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0790275 | Lacticaseibacillus paracasei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001752 | Lactobacillus rhamnosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0790338 | Lacticaseibacillus rhamnosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0809098 | Megamonas funiformis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000216 | Megamonas hypermegale | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002107 | Megasphaera elsdenii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0723994 | Olsenella profusa | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0792853 | Pediococcus acidilactici | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0792856 | Pediococcus acidilactici | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0563066 | Plesiomonas shigelloides | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0692554 | Acidipropionibacterium acidipropionici | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0803106 | Pseudobutyrivibrio ruminis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000257 | Roseburia hominis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0803246 | Roseburia intestinalis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0803247 | Roseburia inulinivorans | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002265 | Ruminococcus bromii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0805717 | Ruminococcus gauvreauii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0803014 | Ruminococcus gnavus | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0000266 | Ruminococcus torques | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002492 | Salmonella enterica | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0559624 | Chania multitudinisentens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002532 | Shigella dysenteriae | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002232 | Shigella flexneri | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002531 | Shigella sonnei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0808830 | Solobacterium moorei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808831 | Solobacterium moorei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0774772 | Staphylococcus arlettae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779527 | Staphylococcus equorum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002564 | Staphylococcus saprophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0774625 | Mammaliicoccus sciuri | Eubacteria | Firmicutes | |
| MMDBm0779587 | Staphylococcus simulans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779599 | Staphylococcus warneri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779602 | Staphylococcus xylosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779603 | Staphylococcus xylosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000269 | Candidatus Stoquefichus massiliensis | Eubacteria | Firmicutes | |
| MMDBm0002597 | Streptococcus agalactiae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794469 | Streptococcus dysgalactiae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002619 | Streptococcus equi | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0806047 | Subdoligranulum variabile | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0519718 | Succinivibrio dextrinosolvens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0793485 | Weissella paramesenteroides | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0562438 | Yersinia frederiksenii | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0552432 | Yokenella regensburgei | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0001052 | Clostridium saccharoperbutylacetonicum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0546994 | Kluyvera ascorbata | Eubacteria | Proteobacteria | Facultative anaerobe |