| MMDBm0001188 | Acinetobacter baumannii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002164 | Acinetobacter pittii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572812 | Acinetobacter haemolyticus | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572828 | Acinetobacter johnsonii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0572837 | Acinetobacter junii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000007 | Acinetobacter pittii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000009 | Adlercreutzia equolifaciens | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0422692 | Afipia birgiae | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0766846 | Aneurinibacillus aneurinilyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000023 | Arcobacter butzleri | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000024 | Bacillus altitudinis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001274 | amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000025 | Bacillus amyloliquefaciens | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730668 | Bacillus atrophaeus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001264 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001257 | Bacillus clausii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730439 | Bacillus endophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0761185 | Cytobacillus firmus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730452 | Bacillus flexus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730456 | Bacillus fordii | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000028 | Bacillus halodurans | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730482 | Bacillus infantis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001255 | Bacillus licheniformis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001269 | Bacillus megaterium | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730692 | Bacillus mojavensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730533 | Bacillus nealsonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730563 | Bacillus pumilus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0730698 | Bacillus sonorensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001248 | Bacillus subtilis | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0730891 | Bacillus thermoamylovorans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0730186 | Bacillus thuringiensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000032 | Bacillus timonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0395112 | Phocaeicola dorei | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392196 | Bacteroides intestinalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000975 | Bacteroides sp. 2_1_33B | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394980 | Parabacteroides sp. 2_1_7 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394979 | Parabacteroides sp. 20_3 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392289 | Bacteroides sp. 3_1_19 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392291 | Bacteroides sp. 3_1_33FAA | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392292 | Bacteroides sp. 3_1_40A | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392301 | Bacteroides sp. 4_3_47FAA | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392307 | Bacteroides sp. 9_1_42FAA | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392455 | Bacteroides sp. D2 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000057 | Bacteroides vulgatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392247 | Bacteroides xylanisolvens | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000079 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000095 | Bradyrhizobium elkanii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0423522 | Bradyrhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0766910 | Brevibacillus agri | Eubacteria | Firmicutes | Aerobe |
| MMDBm0766911 | Brevibacillus agri | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000096 | Brevibacillus borstelensis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000097 | Brevibacillus brevis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0808543 | Bulleidia extructa | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0483496 | Burkholderia cepacia | Eubacteria | Proteobacteria | Microaerophile |
| MMDBm0393350 | Butyricimonas synergistica | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393353 | Butyricimonas virosa | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0399995 | Capnocytophaga sputigena | Eubacteria | Bacteroidetes | Facultative anaerobe |
| MMDBm0685945 | Cellulosimicrobium cellulans | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0000107 | Cloacibacillus evryensis | Eubacteria | Synergistetes | Anaerobe |
| MMDBm0805019 | Paraclostridium bifermentans | Eubacteria | Firmicutes | Obligate anaerobe |
| MMDBm0000120 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001459 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001460 | Clostridium botulinum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001473 | Clostridium sticklandii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001503 | Cryptobacterium curtum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0667921 | Curtobacterium flaccumfaciens | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0397638 | Dyadobacter beijingensis | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0001564 | Dyadobacter fermentans | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0000150 | Eggerthella lenta | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0724384 | Eggerthella sp. 1_3_56FAA | Eubacteria | Actinobacteria | Nanaerobe |
| MMDBm0000151 | Eggerthella sp. YY7918 | Eubacteria | Actinobacteria | Nanaerobe |
| MMDBm0534723 | Enterobacter cancerogenus | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0002278 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787115 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787127 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0787132 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001575 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0784143 | Exiguobacterium aurantiacum | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002188 | Filifactor alocis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0416261 | Fusobacterium varium | Eubacteria | Fusobacteria | Anaerobe |
| MMDBm0761343 | Geobacillus stearothermophilus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0761370 | Geobacillus vulcani | Eubacteria | Firmicutes | Aerobe |
| MMDBm0650438 | Gordonia rubripertincta | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0650453 | Gordonia terrae | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0650454 | Gordonia terrae | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001132 | Gordonibacter pamelaeae | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0786514 | Granulicatella elegans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001685 | Helicobacter pylori | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0001732 | Kytococcus sedentarius | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0002216 | Lactococcus garvieae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001762 | Lactococcus lactis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001766 | Laribacter hongkongensis | Eubacteria | Proteobacteria | Anaerobe |
| MMDBm0763254 | Lysinibacillus fusiformis | Eubacteria | Firmicutes | |
| MMDBm0001794 | Lysinibacillus sphaericus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0001810 | Mesorhizobium japonicum | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0881917 | Methanomassiliicoccus luminyensis | Not Available | Euryarchaeota | Anaerobe |
| MMDBm0670563 | Microbacterium oleivorans | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0670570 | Microbacterium paraoxydans | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0000002 | Micromonospora aurantiaca | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0001878 | Moraxella catarrhalis | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0651046 | Mycobacterium avium | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0657325 | Mycolicibacterium fortuitum | Eubacteria | Actinobacteria | Microaerophile |
| MMDBm0002052 | Mycoplasma hominis | Eubacteria | Tenericutes | Anaerobe |
| MMDBm0764325 | Oceanobacillus picturae | Eubacteria | Firmicutes | |
| MMDBm0000221 | Ochrobactrum anthropi | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000222 | Ochrobactrum intermedium | Eubacteria | Proteobacteria | Microaerophilic |
| MMDBm0393374 | Odoribacter laneus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000223 | Odoribacter splanchnicus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000226 | Paenibacillus alvei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000228 | Paenibacillus daejeonensis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0767965 | Paenibacillus lactis | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000232 | Parabacteroides distasonis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000233 | Parabacteroides goldsteinii | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0394966 | Parabacteroides gordonii | Eubacteria | Bacteroidetes | |
| MMDBm0394970 | Parabacteroides merdae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0395005 | Parabacteroides sp. D13 | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000242 | Porphyromonas endodontalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0002369 | Porphyromonas gingivalis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393926 | Prevotella bivia | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0692554 | Acidipropionibacterium acidipropionici | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0692558 | Acidipropionibacterium jensenii | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0692584 | Pseudopropionibacterium propionicum | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0580104 | Pseudomonas aeruginosa | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580255 | Pseudomonas alcaliphila | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580585 | Pseudomonas monteilii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0580586 | Pseudomonas monteilii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0002403 | Pseudomonas putida | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0000337 | Ralstonia pickettii | Eubacteria | Proteobacteria | Aerobe |
| MMDBm0658815 | Rhodococcus hoagii | Eubacteria | Actinobacteria | Aerobe |
| MMDBm0397948 | Rudanella lutea | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0560533 | Serratia marcescens | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0724468 | Slackia exigua | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0724473 | Slackia piriformis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0808830 | Solobacterium moorei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0808831 | Solobacterium moorei | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0471855 | Sphingomonas paucimobilis | Eubacteria | Proteobacteria | |
| MMDBm0002553 | Spirosoma linguale | Eubacteria | Bacteroidetes | Aerobe |
| MMDBm0774772 | Staphylococcus arlettae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002566 | Staphylococcus aureus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000633 | Staphylococcus capitis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779406 | Staphylococcus cohnii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002562 | Staphylococcus epidermidis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002563 | Staphylococcus haemolyticus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002564 | Staphylococcus saprophyticus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0774625 | Mammaliicoccus sciuri | Eubacteria | Firmicutes | |
| MMDBm0779587 | Staphylococcus simulans | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0774633 | Mammaliicoccus vitulinus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0779602 | Staphylococcus xylosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002597 | Streptococcus agalactiae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794401 | Streptococcus anginosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794438 | Streptococcus australis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794415 | Streptococcus constellatus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794420 | Streptococcus constellatus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794454 | Streptococcus cristatus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794469 | Streptococcus dysgalactiae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002619 | Streptococcus equi | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002607 | Streptococcus gordonii | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794428 | Streptococcus intermedius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0794800 | Streptococcus parasanguinis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002632 | Streptococcus parauberis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002610 | Streptococcus pneumoniae | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002598 | Streptococcus pyogenes | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0002603 | Streptococcus salivarius | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0796207 | Streptococcus thoraltensis | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002614 | Streptococcus uberis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0774233 | Ureibacillus thermosphaericus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0000207 | Limosilactobacillus reuteri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000409 | Capnocytophaga ochracea | Eubacteria | Bacteroidetes | Aerobe; anaerobe |
| MMDBm0000464 | Bacillus mycoides | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0000767 | Bacillus pseudofirmus | Eubacteria | Firmicutes | Facultative aerobe |
| MMDBm0001035 | Bacillus cereus | Eubacteria | Firmicutes | Aerobe |
| MMDBm0658814 | Rhodococcus hoagii | Eubacteria | Actinobacteria | |
| MMDBm0670509 | Microbacterium gubbeenense | Eubacteria | Actinobacteria | Facultative anaerobe |
| MMDBm0772876 | Kurthia massiliensis | Eubacteria | Firmicutes | Aerobe |