| MMDBm0000015 | Akkermansia muciniphila | Eubacteria | Verrucomicrobia | Anaerobe |
| MMDBm0000024 | Bacillus altitudinis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0392079 | Bacteroides caccae | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392086 | Bacteroides cellulosilyticus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392208 | Bacteroides ovatus | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000055 | thetaiotaomicron | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0392239 | Bacteroides uniformis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0393007 | Barnesiella intestinihominis | Eubacteria | Bacteroidetes | Anaerobe |
| MMDBm0000064 | Bifidobacterium adolescentis | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000067 | Bifidobacterium bifidum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0000079 | Bifidobacterium longum | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0798796 | Clostridium celatum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0799100 | Clostridium sp. 7_2_43FAA | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0802901 | Clostridium symbiosum | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0724102 | Collinsella aerofaciens | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0787127 | Enterococcus faecalis | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001583 | Escherichia coli | Eubacteria | Proteobacteria | Facultative anaerobe |
| MMDBm0000180 | Faecalibacterium prausnitzii | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0001748 | Lactobacillus casei | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001743 | Lactobacillus gasseri | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0001752 | Lactobacillus rhamnosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0790338 | Lacticaseibacillus rhamnosus | Eubacteria | Firmicutes | Facultative anaerobe |
| MMDBm0792853 | Pediococcus acidilactici | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0792856 | Pediococcus acidilactici | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0002383 | Propionibacterium acnes | Eubacteria | Actinobacteria | Anaerobe |
| MMDBm0803020 | Ruminococcus torques | Eubacteria | Firmicutes | Anaerobe |
| MMDBm0626730 | Stenotrophomonas rhizophila | Eubacteria | Proteobacteria | Anaerobe |