MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0049930	(-)-Ureidoglycolate	C₃H₆N₂O₄ 134.0907	Human Feces	251	Co-metabolite	Not Available
MMDBc0049931	N-Succinyl-LL-2,6-diaminoheptanedioate	C₁₁H₁₈N₂O₇ 290.2698	Human Feces	328	Co-metabolite	Not Available
MMDBc0049932	Carbamate	CH₃NO₂ 61.04	Human Feces Human Neuron Human Placenta	344	Co-metabolite	Not Available
MMDBc0049933	4-Aminobenzoate	C₇H₇NO₂ 137.136	Human Feces Human Urine Human Blood Human Epidermis Human Fibroblasts Human Intestine Human Liver Human Placenta Human Prostate	691	Co-metabolite	Not Available
MMDBc0049934	Dihydroneopterin	C₉H₁₃N₅O₄ 255.2306	Human Feces	709	Co-metabolite	Not Available
MMDBc0049935	Dihydropteroate	C₁₄H₁₄N₆O₃ 314.2994	Human Feces	842	Co-metabolite	Not Available
MMDBc0049936	Glycyl-L-tyrosine	C₁₁H₁₄N₂O₄ 238.243	Human Feces Human Saliva	864	Co-metabolite	Not Available
MMDBc0049937	Glycyl-L-asparagine	C₆H₁₁N₃O₄ 189.1692	Human Feces	864	Co-metabolite	Not Available
MMDBc0049938	Glycyl-L-aspartate	C₆H₁₀N₂O₅ 190.154	Human Feces	864	Co-metabolite	Not Available
MMDBc0049939	Glycyl-L-glutamine	C₇H₁₃N₃O₄ 203.1958	Human Feces	864	Co-metabolite	Not Available
MMDBc0049940	Glycyl-L-glutamate	C₇H₁₂N₂O₅ 204.182	Human Feces	864	Co-metabolite	Not Available
MMDBc0049941	(3S)-3,6-Diaminohexanoate	C₆H₁₄N₂O₂ 146.1876	Human Feces	215	Co-metabolite	Not Available
MMDBc0049942	5-Aminopentanamide	C₅H₁₂N₂O 116.1616	Human Feces	21	Co-metabolite	Not Available
MMDBc0049943	1,5-Diaminopentane	C₅H₁₄N₂ 102.1781	Human Feces Human Blood Human Urine Human Saliva Human Epidermis Human Intestine Human Prostate	412	Co-metabolite	Not Available
MMDBc0049944	N-Carbamoylputrescine	C₅H₁₃N₃O 131.1762	Human Feces	361	Co-metabolite	Not Available
MMDBc0049945	D-Galacturonate	C₆H₁₀O₇ 194.1394	Human Feces	468	Co-metabolite	Not Available
MMDBc0049946	1-(5-Phosphoribosyl)-AMP	C₁₅H₂₃N₅O₁₄P₂ 559.3157	Human Feces	648	Co-metabolite	Not Available
MMDBc0049947	Shikimate	C₇H₁₀O₅ 174.1513	Human Feces Human Urine Human Blood	669	Co-metabolite	Not Available
MMDBc0049949	6-phosphonato-5-dehydro-2-deoxy-D-gluconate(3-)	C₆H₁₁O₉P 258.119	Human Feces	169	Co-metabolite	Not Available
MMDBc0049950	D-Malate	C₄H₆O₅ 134.0874	Human Feces	101	Co-metabolite	Not Available
MMDBc0049951	D-erythro-1-(Imidazol-4-yl)glycerol 3-phosphate	C₆H₁₁N₂O₆P 238.1351	Human Feces	1303	Co-metabolite	Not Available
MMDBc0049952	P1,P4-Bis(5'-uridyl) tetraphosphate	C₁₈H₂₆N₄O₂₃P₄ 790.3071	Human Feces	216	Co-metabolite	Not Available
MMDBc0049953	cis-4-Hydroxy-D-proline	C₅H₉NO₃ 131.1299	Human Feces	108	Co-metabolite	Not Available
MMDBc0049954	2-Hydroxyhepta-2-4-dienedioate	C₇H₆O₅ 170.121	Human Feces	118	Co-metabolite	Not Available
MMDBc0049956	2,3,4,5-Tetrahydrodipicolinate	C₇H₉NO₄ 171.1507	Human Feces	831	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0375749	Abelson murine leukemia virus	Pararnavirae	Artverviricota	Not Available	Not Available	Not Available	Non-pathogenic	0
MMDBm0785737	Abiotrophia	Eubacteria	Firmicutes	Not Available	Not Available	Human Gingiva Human Large intestine	Pathogenic	0
MMDBm0785738	Abiotrophia defectiva	Eubacteria	Firmicutes	Facultative anaerobe	Saccharolytic, fermentative or respiratory	Human Human Lung	Pathogenic	5
MMDBm0785739	Abiotrophia defectiva ATCC 49176	Eubacteria	Firmicutes	Facultative anaerobe	Saccharolytic, fermentative or respiratory	Human Gut Human Lung	Non-pathogenic	610
MMDBm0808511	Absicoccus porci	Eubacteria	Firmicutes	Anaerobic	Fermentative	Not Available	Non-pathogenic	0
MMDBm0000643	Absiella dolichum	Eubacteria	Firmicutes	Not Available	Not Available	Human Large intestine	Pathogenic	30
MMDBm0808535	Absiella dolichum DSM 3991	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	507
MMDBm0774511	Abyssicoccus albus	Eubacteria	Firmicutes	Not Available	Not Available	Human Skin	Pathogenic	0
MMDBm0382092	Acanthamoeba polyphaga mimivirus	Bamfordvirae	Nucleocytoviricota	Not Available	Not Available	Not Available	Non-pathogenic	35
MMDBm0024946	Acanthostigmella	Fungi	Ascomycota	Not Available	Not Available	Not Available	Non-pathogenic	1
MMDBm0881491	Acanthostigmella sp. CL12082	Fungi	Not Available	Not Available	Not Available	Not Available	Non-pathogenic	1
MMDBm0037488	Acarospora	Fungi	Ascomycota	Not Available	Not Available	Not Available	Non-pathogenic	28
MMDBm0001162	Acaryochloris marina MBIC11017	Eubacteria	Cyanobacteria	Aerobe	Not Available	Not Available	Non-pathogenic	173
MMDBm0072674	Acaulium	Fungi	Ascomycota	Not Available	Not Available	Not Available	Non-pathogenic	6
MMDBm0881278	Acer saccharum	Not Available	Not Available	Not Available	Not Available	Not Available	Non-pathogenic	1
MMDBm0805362	Acetanaerobacterium elongatum	Eubacteria	Firmicutes	Not Available	Not Available	Human Large intestine	Pathogenic	0
MMDBm0805364	Acetanaerobacterium sp.	Eubacteria	Firmicutes	Not Available	Not Available	Human Large intestine	Pathogenic	0
MMDBm0805371	Acetivibrio	Eubacteria	Firmicutes	Not Available	Not Available	Human Large intestine	Pathogenic	0
MMDBm0805372	Acetivibrio ethanolgignens	Eubacteria	Firmicutes	Not Available	Fermentative	Not Available	Non-pathogenic	0
MMDBm0001027	Acetoanaerobium sticklandii	Eubacteria	Firmicutes	Anaerobic	Fermentative	Not Available	Non-pathogenic	16
MMDBm0460618	Acetobacter aceti	Eubacteria	Proteobacteria	Not Available	Not Available	Not Available	Non-pathogenic	11
MMDBm0000349	Acetobacter pasteurianus	Eubacteria	Proteobacteria	Aerobic	Fermentative, Acetic acid production, Methylation	Not Available	Non-pathogenic	20
MMDBm0460648	Acetobacter sp. 46_36	Eubacteria	Proteobacteria	Not Available	Scfa Production	Not Available	Non-pathogenic	0
MMDBm0460821	Acetobacter sp. CAG:977	Eubacteria	Proteobacteria	Not Available	Hydrogenogenic	Not Available	Non-pathogenic	0
MMDBm0000657	Acetobacterium woodii	Eubacteria	Firmicutes	Anaerobic	Acetogenic, Homoacetogenic, Fermentative, Methanogenic, Anaerobic respiration, Sodium-dependent atp synthesis, Electron bifurcation, Hydrogen production, Acetogenic, fermentative, Hydrogen-dependent co2 reduction, Co2-reduction	Not Available	Non-pathogenic	35

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