MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0047978	Indoleacrylic acid	C₁₁H₉NO₂ 187.198	Human Feces Human Blood Human Urine	0	Co-metabolite
MMDBc0047980	3,4-Dihydroxybenzeneacetic acid	C₈H₈O₄ 168.1467	Human Blood Human Cerebrospinal Fluid (CSF) Human Urine Human Feces Human Brain Human Neuron	192	Co-metabolite
MMDBc0047987	3-(3-Hydroxyphenyl)-3-hydroxypropanoic acid	C₉H₁₀O₄ 182.1733	Human Urine Human Blood	0	Co-metabolite	Meat
MMDBc0047988	Zeaxanthin	C₄₀H₅₆O₂ 568.886	Human Blood Human Adipose Tissue Human Eye Lens Human Retina Human Spleen	4	Co-metabolite
MMDBc0047992	Dimethyl sulfone	C₂H₆O₂S 94.133	Human Blood Human Cerebrospinal Fluid (CSF) Human Urine Human Saliva Human Brain Human Kidney Human Liver	2	Co-metabolite	Fruit
MMDBc0047993	3-Indoleacetonitrile	C₁₀H₈N₂ 156.1839	Human Blood Human Urine	11	Co-metabolite
MMDBc0047995	2-Phenylpropionate	C₉H₁₀O₂ 150.1745	Human Urine	0	Co-metabolite	Meat
MMDBc0047998	4-Hydroxyhippuric acid	C₉H₉NO₄ 195.1721	Human Blood Human Urine Human Feces Human Placenta	0	Co-metabolite	Not Available
MMDBc0048003	Phenylacetaldehyde	C₈H₈O 120.1485	Human Feces	45	Co-metabolite	Beer
MMDBc0048004	Benzene	C₆H₆ 78.1118	Human Blood Human Bone Marrow Human Epidermis Human Leukocyte Human Liver Human Saliva Human Feces Human Breath	2	Co-metabolite
MMDBc0048005	Pyrocatechol	C₆H₆O₂ 110.1106	Human Feces Human Urine Human Blood Human Adipose Tissue Human Adrenal Gland Human Bone Marrow Human Brain Human Intestine Human Liver Human Neuron Human Prostate	99	Co-metabolite	Milk
MMDBc0048006	D-Phenyllactic acid	C₉H₁₀O₃ 166.1739	Human Feces	11	Co-metabolite	Beer
MMDBc0048007	Ethylbenzene	C₈H₁₀ 106.165	Human Blood Human Feces Human Breath	1	Co-metabolite
MMDBc0048008	Pyrrolidine	C₄H₉N 71.121	Not Available	0	Co-metabolite
MMDBc0048010	Cinnamic acid	C₉H₈O₂ 148.1586	Human Urine Human Blood Human Liver Human Feces	4	Co-metabolite	Not Available
MMDBc0048011	4-Ethylphenol	C₈H₁₀O 122.1644	Human Urine Human Blood	1	Co-metabolite	Coffee
MMDBc0048013	Protocatechuic acid	C₇H₆O₄ 154.121	Human Urine Human Blood Human Feces Human Fibroblasts Human Testis	4	Co-metabolite
MMDBc0048014	2,6-Dihydroxybenzoic acid	C₇H₆O₄ 154.121	Human Blood Human Urine	4	Co-metabolite	Beer
MMDBc0048016	5,6-Dihydroxyindole	C₈H₇NO₂ 149.1467	Human Feces	0	Co-metabolite	Not Available
MMDBc0048017	o-Xylene	C₈H₁₀ 106.165	Human Blood Human Saliva Human Feces	1	Co-metabolite	Not Available
MMDBc0048018	Octane	C₈H₁₈ 114.2285	Human Saliva Human Feces Human Breath	5	Co-metabolite	Not Available
MMDBc0048019	Hydroxyphenylacetylglycine	C₁₀H₁₁NO₄ 209.1986	Human Urine Human Blood	0	Co-metabolite	Not Available
MMDBc0048022	3-Phenylbutyric acid	C₁₀H₁₂O₂ 164.2011	Not Available	0	Co-metabolite	Not Available
MMDBc0048024	3-Indolebutyric acid	C₁₂H₁₃NO₂ 203.2371	Human Neuron Human Platelet Human Blood	0	Co-metabolite
MMDBc0048025	Indoxyl	C₈H₇NO 133.1473	Human Feces	2	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0000001	Bacteroides fragills NCTC 9343	Not Available	Microspora	Nanaerobe	Not Available	Human Gut	Non-pathogenic	0
MMDBm0000002	Micromonospora aurantiaca ATCC 27029	Eubacteria	Actinobacteria	Aerobe	Polyisoprene rubber degrader	Human Gut	Non-pathogenic	812
MMDBm0000003	Acidaminococcus fermentans DSM 20731	Eubacteria	Firmicutes	Anaerobe	Not Available	Pig Human Gut	Pathogenic	675
MMDBm0000004	Acidaminococcus intestini RyC-MR95	Eubacteria	Firmicutes	Anaerobe	Asaccharolytic, glutamate is fermented	Human Gut	Pathogenic	580
MMDBm0000005	Acidovorax sp. KKS102	Eubacteria	Proteobacteria	Not Available	Hydrocarbon Degradation	Human Gut	Pathogenic	0
MMDBm0000006	Acinetobacter baumannii	Eubacteria	Proteobacteria	Aerobe	Prototrophic	Human Human Thigh Human Lower respiratory tract Human Lung Human Trachea Human Gingiva	Pathogenic	39
MMDBm0000007	Acinetobacter pittii ANC 4052	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut Human Lower respiratory tract	Non-pathogenic	837
MMDBm0000008	Acinetobacter radioresistens NIPH 2130	Eubacteria	Proteobacteria	Aerobe	Asaccharolytic	Human Gut	Non-pathogenic	791
MMDBm0000009	Adlercreutzia equolifaciens DSM 19450	Eubacteria	Actinobacteria	Anaerobe	Asaccharolytic, nonfermentative	Human Gut	Pathogenic	553
MMDBm0000010	Aeromonas jandaei Riv2	Eubacteria	Proteobacteria	Facultative anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	847
MMDBm0000011	Aggregatibacter aphrophilus NJ8700	Eubacteria	Proteobacteria	Facultative	Respiratory	Human Human Gut Human Lung Human Oral cavity dental cary Human Ovary Human Sinus	Non-pathogenic	706
MMDBm0000012	Agrobacterium tumefaciens F2	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut	Non-pathogenic	858
MMDBm0000013	Akkermansia	Eubacteria	Verrucomicrobia	Anaerobic	Fermentative, Mucin-degrading, Decarboxylation (arginine decarboxylase), Alkaline phosphatase activity, Short chain fatty acid production, Interaction with gut epithelial cells, Anti-inflammatory, Propionate production, Vitamin b12 synthesis	Human Large intestine Human Duodenum	Pathogenic	0
MMDBm0000014	Akkermansia muciniphila	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Gut Human Human Large intestine Human Bladder	Pathogenic	149
MMDBm0000015	Akkermansia muciniphila ATCC BAA-835	Eubacteria	Verrucomicrobia	Anaerobe	Saccharolytic, fermentative	Human Human Gut Human Large intestine	Pathogenic	718
MMDBm0000016	Alcaligenes faecalis subsp. faecalis NBRC 13111	Eubacteria	Proteobacteria	Aerobe	Respiratory	Human Gut Human Lower respiratory tract	Non-pathogenic	807
MMDBm0000017	Alistipes	Eubacteria	Bacteroidetes	Anaerobic	Fermentative, Scfa producer, Putrefaction, Indole production, Histidine degradation, Gaba production, Sulfonolipid production, Anaerobic respiration, Sulfonolipid biosynthesis	Human Large intestine Human Bladder	Pathogenic	0
MMDBm0000018	Alistipes finegoldii DSM 17242	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	646
MMDBm0000019	Alistipes shahii WAL 8301	Eubacteria	Bacteroidetes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Appendix	Pathogenic	598
MMDBm0000020	Anaerococcus prevotii DSM 20548	Eubacteria	Firmicutes	Anaerobe	Not Available	Human Human Gut	Pathogenic	631
MMDBm0000021	Anaerostipes caccae	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative, acetate and lactate converted to butyrate	Human Large intestine	Pathogenic	602
MMDBm0000022	Anaerostipes hadrus	Eubacteria	Firmicutes	Anaerobe	Saccharolytic, fermentative	Human Gut Human Large intestine	Pathogenic	42
MMDBm0000023	Arcobacter butzleri RM4018	Eubacteria	Proteobacteria	Aerobe	Non-fermentative, asaccharolytic	Human Human Gut	Non-pathogenic	665
MMDBm0000024	Bacillus altitudinis 41KF2b	Eubacteria	Firmicutes	Facultative anaerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	836
MMDBm0000025	Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12	Eubacteria	Firmicutes	Aerobe	Respiration or fermentation of carbohydrates and central metabolism intermediates	Human Gut	Non-pathogenic	844

Host and Site

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