MiMeDB: Host and Site

Metabolites
Microbes

Metabolite ID	Name	Formula MW	Host & Biospecimen (status - Q; D; E; P)	# Related Microbes	Metabolite Type	Additional sources
MMDBc0049627	cis-beta-D-Glucosyl-2-hydroxycinnamate	C₁₅H₁₈O₈ 326.2986	Human Feces	10	Co-metabolite	Not Available
MMDBc0049707	Beta-tocopherol	C₂₈H₄₈O₂ 416.6795	Human Feces Human Blood Human Placenta	10	Co-metabolite	Not Available
MMDBc0049712	2-Naphthol	C₁₀H₈O 144.1699	Human Feces Human Urine	10	Co-metabolite	Not Available
MMDBc0049735	(+)-Gama-Tocopherol	C₂₈H₄₈O₂ 416.6795	Human Feces Human Blood Human Breast Milk Human Adipose Tissue Human Epidermis Human Erythrocyte Human Fibroblasts Human Heart Human Intestine Human Leukocyte Human Liver Human Placenta Human Platelet Human Prostate Human Skeletal Muscle	11	Co-metabolite	Not Available
MMDBc0049770	Naphthalene-1,2-diol	C₁₀H₈O₂ 160.1693	Human Feces	6	Co-metabolite	Not Available
MMDBc0049786	Phylloquinol	C₃₁H₄₈O₂ 452.7116	Human Feces	17	Co-metabolite	Not Available
MMDBc0049787	10-Formyltetrahydrofolate-[Glu](5)	C₄₀H₄₅N₁₁O₁₉ 983.861	Human Feces	842	Co-metabolite	Not Available
MMDBc0049792	1,2-Ethanediol	C₂H₆O₂ 62.0678	Human Feces	96	Co-metabolite	Not Available
MMDBc0049802	9(S)-HPODE	C₁₈H₃₂O₄ 312.45	Human Feces Human Blood	1	Co-metabolite	Not Available
MMDBc0049803	13-L-Hydroperoxylinoleic acid	C₁₈H₃₂O₄ 312.4443	Human Feces Human Blood	1	Co-metabolite	Not Available
MMDBc0049810	11-Hydroperoxyoctadeca-9,12-Dienoic Acid	C₁₈H₃₁O₄ 311.443	Human Feces	6	Co-metabolite	Not Available
MMDBc0049845	Peroxynitrite	NO₃ 62.0049	Human Feces Human Cerebrospinal Fluid (CSF)	36	Co-metabolite	Not Available
MMDBc0049847	Lead	Pb 207.2	Human Feces Human Blood Human Urine Human Saliva Human Cerebrospinal Fluid (CSF)	810	Co-metabolite	Not Available
MMDBc0049848	Sulfur	S 32.065	Human Feces Human Blood Human Brain Human Cartilage Human Epidermis Human Hair Human Liver Human Platelet	508	Co-metabolite	Not Available
MMDBc0049850	Arsenobetaine	C₅H₁₁AsO₂ 178.0612	Human Feces Human Urine Human Blood	299	Co-metabolite	Not Available
MMDBc0049851	Precorrin 3B	C₄₃H₅₀N₄O₁₇ 894.884	Human Feces	318	Co-metabolite	Not Available
MMDBc0049852	Cobalt-precorrin 2	C₄₂H₄₆CoN₄O₁₆ 921.775	Human Feces	334	Co-metabolite	Not Available
MMDBc0049853	Cobalt-precorrin 6	C₄₄H₅₃CoN₄O₁₆ 952.853	Human Feces	301	Co-metabolite	Not Available
MMDBc0049854	Precorrin 6A	C₄₄H₅₄N₄O₁₆ 894.928	Human Feces	264	Co-metabolite	Not Available
MMDBc0049855	Allolithocholic Acid	C₂₄H₄₀O₃ 376.5726	Human Feces Human Gall Bladder Human Intestine Human Kidney Human Liver	5	Co-metabolite	Not Available
MMDBc0049856	5,6,7,8-Tetrahydromethanopterin	C₃₀H₄₅N₆O₁₆P 776.6827	Human Feces	36	Co-metabolite	Not Available
MMDBc0049857	5,10-Methylenetetrahydromethanopterin	C₃₁H₄₅N₆O₁₆P 788.6934	Human Feces	28	Co-metabolite	Not Available
MMDBc0049858	D-1-Aminopropan-2-ol O-phosphate	C₃H₁₀NO₄P 155.09	Human Feces	403	Co-metabolite	Not Available
MMDBc0049859	(3S,5S)-3,5-Diaminocaproate	C₆H₁₄N₂O₂ 146.1876	Human Feces	39	Co-metabolite	Not Available
MMDBc0049860	(S)-5-Amino-3-oxohexanoate	C₆H₁₁NO₃ 145.1564	Human Feces	22	Co-metabolite	Not Available

Microbe ID	Organism	Kindgom	Phylum	Oxygen preference	Energy production	Host and body site	Pathogenicity and disease	# Related metabolites
MMDBm0002426	Pyrococcus sp. NA2	Archaea	Euryarchaeota	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	0
MMDBm0001403	Candidatus Zinderia insecticola CARI	Eubacteria	Proteobacteria	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	3
MMDBm0002751	Vulcanisaeta moutnovskia 768-28	Archaea	Crenarchaeota	Obligate anaerobic	Not Available	Not Available	Non-pathogenic	7
MMDBm0804868	Clostridioides difficile NAP07	Eubacteria	Firmicutes	Obligate anaerobe	Proteolytic, few carbohydrates fermented	Human Gut	Non-pathogenic	737
MMDBm0804869	Clostridioides difficile NAP08	Eubacteria	Firmicutes	Obligate anaerobe	Proteolytic, few carbohydrates fermented	Human Gut	Non-pathogenic	738
MMDBm0000265	Ruminococcus sp. SR1/5	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Pathogenic	650
MMDBm0646414	Schaalia cardiffensis F0333	Eubacteria	Actinobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	631
MMDBm0805392	Agathobaculum desmolans ATCC 43058	Eubacteria	Firmicutes	Obligate anaerobe	Not Available	Human Gut	Non-pathogenic	672
MMDBm0646417	Schaalia georgiae DSM 6843	Eubacteria	Actinobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	504
MMDBm0808723	Faecalicoccus pleomorphus DSM 20574	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	620
MMDBm0392215	Bacteroides pyogenes DSM 20611 = JCM 6294	Eubacteria	Bacteroidetes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	639
MMDBm0809759	Veillonella seminalis ACS-216-V-Col6b	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	676
MMDBm0803361	Tyzzerella nexilis DSM 1787	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	612
MMDBm0808748	Holdemanella biformis DSM 3989	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	550
MMDBm0810288	Anaerococcus hydrogenalis DSM 7454	Eubacteria	Firmicutes	Obligate anaerobe	Weakly saccharolytic, fermentative	Human Gut Human Large intestine	Non-pathogenic	564
MMDBm0001850	Methanothermobacter marburgensis str. Marburg	Archaea	Euryarchaeota	Obligate anaerobe	Methanogen	Not Available	Non-pathogenic	71
MMDBm0000833	Methanothermobacter marburgensis	Not Available	Euryarchaeota	Obligate anaerobe	Methanogen	Not Available	Non-pathogenic	0
MMDBm0562753	Yersinia rohdei	Eubacteria	Proteobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Large intestine	Pathogenic	11
MMDBm0562754	Yersinia rohdei ATCC 43380	Eubacteria	Proteobacteria	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	892
MMDBm0882240	Ruminococcaceae bacterium	Eubacteria	Firmicutes	Obligate anaerobe	Uncharacterized	Not Available	Non-pathogenic	0
MMDBm0805202	Terrisporobacter glycolicus ATCC 14880 = DSM 1288	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	745
MMDBm0808535	Absiella dolichum DSM 3991	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	507
MMDBm0808542	Bulleidia extructa	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human	Non-pathogenic	3
MMDBm0808543	Bulleidia extructa W1219	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	530
MMDBm0801127	Hungatella hathewayi 12489931	Eubacteria	Firmicutes	Obligate anaerobe	Saccharolytic, fermentative	Human Gut	Non-pathogenic	750

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