| MMDBm0000599 | Naumovozyma dairenensis | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0064156 | Fusarium graminearum PH-1 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000585 | Candida tropicalis | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0084811 | Microdochium nivale | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0001007 | Tetrapisispora blattae | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0064153 | Fusarium graminearum | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0000690 | Candida dubliniensis | Fungi | Ascomycota | Human Feces | Microbial culture | Not Available |
| MMDBm0000817 | Tetrapisispora phaffii | Fungi | Ascomycota | Not Available | Microbial culture | Not Available |
| MMDBm0001955 | Picrophilus torridus DSM 9790 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002701 | Thermoplasma acidophilum DSM 1728 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0723996 | Olsenella profusa F0195 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0670563 | Microbacterium oleivorans NBRC 103075 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0805001 | Intestinibacter bartlettii DSM 16795 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0802423 | Butyrivibrio crossotus DSM 2876 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002484 | Ruminococcus albus 7 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0558122 | Proteus penneri ATCC 35198 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0802657 | Dorea longicatena DSM 13814 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0724109 | Collinsella stercoris DSM 13279 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0794428 | Streptococcus intermedius JTH08 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001069 | Lactobacillus acidophilus | Bacteria | Firmicutes | Human | Microbial culture | Not Available |
| MMDBm0779587 | Staphylococcus simulans ACS-120-V-Sch1 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416185 | Fusobacterium gonidiaformans 3-1-5R | Bacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0808748 | Holdemanella biformis DSM 3989 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
