| MMDBm0098142 | Kluyveromyces lactis NRRL Y-1140 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0029062 | Aspergillus nidulans FGSC A4 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0382092 | Acanthamoeba polyphaga mimivirus | Bamfordvirae | Nucleocytoviricota | Not Available | Not Available | RHEA |
| MMDBm0001818 | Methanocaldococcus jannaschii DSM 2661 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002425 | Pyrococcus furiosus DSM 3638 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002424 | Pyrococcus horikoshii OT3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002690 | Thermococcus kodakarensis KOD1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002423 | Pyrococcus abyssi GE5 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002403 | Pseudomonas putida F1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0730698 | Bacillus sonorensis L12 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0692720 | Cutibacterium granulosum DSM 20700 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000025 | Bacillus amyloliquefaciens subsp. amyloliquefaciens DC-12 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0416223 | Fusobacterium nucleatum subsp. animalis 3_1_33 | Bacteria | Fusobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0806718 | Eubacterium saphenum ATCC 49989 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0648061 | Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0779566 | Staphylococcus pasteuri SP1 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0393007 | Barnesiella intestinihominis YIT 11860 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0724468 | Slackia exigua ATCC 700122 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0792655 | Lactobacillus brevis subsp. gravesensis ATCC 27305 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000220 | Myroides injenensis | Bacteria | Bacteroidetes | Not Available | Microbial culture | Not Available |
| MMDBm0544444 | Klebsiella michiganensis KCTC 1686 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0514117 | Campylobacter jejuni subsp. jejuni ICDCCJ07004 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
