| MMDBm0881917 | Methanomassiliicoccus luminyensis B10 | Archaea | Euryarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0809759 | Veillonella seminalis ACS-216-V-Col6b | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809016 | Phascolarctobacterium succinatutens YIT 12067 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809204 | Selenomonas ruminantium AC2024 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809111 | Mitsuokella jalaludinii DSM 13811 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809112 | Mitsuokella multacida DSM 20544 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809578 | Dialister invisus DSM 15470 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002107 | Megasphaera elsdenii DSM 20460 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809587 | Dialister succinatiphilus YIT 11850 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0815377 | Ureaplasma parvum serovar 1 str. ATCC 27813 | Bacteria | Tenericutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0815403 | Ureaplasma urealyticum serovar 8 str. ATCC 27618 | Bacteria | Tenericutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000559 | Methanocaldococcus jannaschii | Archaea | Euryarchaeota | Not Available | Microbial culture | Not Available |
| MMDBm0000892 | Methanotorris formicicus | Archaea | Euryarchaeota | Not Available | Microbial culture | Not Available |
| MMDBm0000997 | Methanocaldococcus villosus | Archaea | Euryarchaeota | Not Available | Microbial culture | Not Available |
| MMDBm0000759 | Methanocaldococcus vulcanius | Archaea | Euryarchaeota | Not Available | Microbial culture | Not Available |
| MMDBm0000773 | Methanocaldococcus fervens | Archaea | Euryarchaeota | Not Available | Microbial culture | Not Available |
| MMDBm0000748 | Methanocaldococcus infernus | Archaea | Euryarchaeota | Not Available | Microbial culture | Not Available |
| MMDBm0001817 | Methanobrevibacter ruminantium M1 | Archaea | Euryarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0580229 | Pseudomonas nitroreducens HBP1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000932 | Pseudomonas entomophila | Bacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000335 | Pseudomonas stutzeri | Bacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0516564 | Aeromonas media WS | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002086 | Pseudomonas stutzeri DSM 4166 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000332 | Pseudomonas fluorescens | Bacteria | Proteobacteria | Human | Microbial culture | Not Available |
| MMDBm0000336 | Pseudomonas syringae | Bacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
