| MMDBm0000108 | Clostridioides difficile | Bacteria | Firmicutes | Human Feces | Microbial culture | Not Available |
| MMDBm0000119 | Clostridium botulinum | Bacteria | Firmicutes | Human Feces | Microbial culture | Not Available |
| MMDBm0000138 | Clostridium sporogenes | Bacteria | Firmicutes | Human Vaginal secretion | Microbial culture | Not Available |
| MMDBm0000154 | Enterococcus faecium Aus0004 | Bacteria | Firmicutes | Human Feces | Not Available | RHEA |
| MMDBm0000219 | Methylobacterium nodulans | Bacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000220 | Myroides injenensis | Bacteria | Bacteroidetes | Not Available | Microbial culture | Not Available |
| MMDBm0000462 | Bacillus licheniformis | Bacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0000471 | Virgibacillus halodenitrificans | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000519 | Corynebacterium glutamicum | Bacteria | Actinobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0000590 | Trichomonas vaginalis | Eukaryota | Parabasalia | Not Available | Microbial culture | Not Available |
| MMDBm0000592 | Plasmodium berghei | Eukaryota | Apicomplexa | Not Available | Microbial culture | Not Available |
| MMDBm0000594 | Plasmodium knowlesi | Eukaryota | Apicomplexa | Not Available | Microbial culture | Not Available |
| MMDBm0000613 | Acetohalobium arabaticum | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000686 | Sutterella wadsworthensis | Bacteria | Proteobacteria | Human Stool | Microbial culture | Not Available |
| MMDBm0000764 | Succinispira mobilis | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0000770 | Aminobacterium colombiense | Bacteria | Synergistetes | Not Available | Microbial culture | Not Available |
| MMDBm0000878 | Candidatus Baumannia cicadellinicola | Bacteria | Proteobacteria | Not Available | Microbial culture | Not Available |
| MMDBm0001057 | Enterococcus faecium | Bacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0001061 | Eubacterium rectale | Bacteria | Firmicutes | Human Stool | Microbial culture | Not Available |
| MMDBm0001062 | Fusobacterium nucleatum | Bacteria | Fusobacteria | Human Mucosa | Microbial culture | Not Available |
| MMDBm0001077 | Paraclostridium bifermentans | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0001079 | Porphyromonas gingivalis | Bacteria | Bacteroidetes | Human | Microbial culture | Not Available |
| MMDBm0001088 | Streptococcus thermophilus | Bacteria | Firmicutes | Not Available | Microbial culture | Not Available |
| MMDBm0002209 | Escherichia coli BL21(DE3) | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0002424 | Pyrococcus horikoshii OT3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
