| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0085327 | Pestalotiopsis fici W106-1 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0002424 | Pyrococcus horikoshii OT3 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002693 | Thermococcus sibiricus MM 739 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002423 | Pyrococcus abyssi GE5 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002690 | Thermococcus kodakarensis KOD1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002425 | Pyrococcus furiosus DSM 3638 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0002691 | Thermococcus onnurineus NA1 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0544527 | Klebsiella pneumoniae BIDMC 31 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0805019 | Paraclostridium bifermentans ATCC 19299 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001333 | Burkholderia thailandensis E264 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001189 | Acinetobacter baumannii AB307-0294 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0002534 | Shigella flexneri 5 str. 8401 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0001347 | Burkholderia phymatum STM815 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0534735 | Enterobacter cloacae EcWSU1 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000096 | Brevibacillus borstelensis AK1 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001458 | Clostridium kluyveri DSM 555 | Bacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0001265 | Bacillus cereus Q1 | Bacteria | Firmicutes | Not Available | Not Available | RHEA |
| MMDBm0002562 | Staphylococcus epidermidis ATCC 12228 | Bacteria | Firmicutes | Human | Not Available | RHEA |
| MMDBm0002482 | Ruegeria pomeroyi DSS-3 | Bacteria | Proteobacteria | Not Available | Not Available | RHEA |
| MMDBm0001658 | Haemophilus influenzae Rd KW20 | Bacteria | Proteobacteria | Human | Not Available | RHEA |
| MMDBm0730668 | Bacillus atrophaeus ATCC 49822-1 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0399987 | Capnocytophaga granulosa ATCC 51502 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
