MiMeDB: Showing metabocard for Cytidine 3'-monophosphate (MMDBc0000720)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2020-12-10 18:53:29 UTC

Update Date

2024-10-13 11:21:23 UTC

Metabolite ID

MMDBc0000720

Metabolite Identification

Common Name

Cytidine 3'-monophosphate

Description

Cytidine 3'-monophosphate (3'-CMP), also known as 3'-cytidylic acid or 3'-cytidylate, belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups. Cytidine 3'-monophosphate has been identified in the human placenta (PMID: 32033212 ).

Structure

MOL SDF PDB SMILES InChI

Synonyms

Value	Source
3'-Cytidylic acid	ChEBI
Cytidine 3'-phosphate	ChEBI
CYTIDINE-3'-monophosphATE	ChEBI
3'-Cytidylate	Generator
Cytidine 3'-phosphoric acid	Generator
CYTIDINE-3'-monophosphoric acid	Generator
Cytidine 3'-monophosphoric acid	Generator
CMP	HMDB
monoPhosphate, cytidine	HMDB
Acid, cytidylic	HMDB
Cytidylic acid	HMDB
3' CMP	HMDB
Cytidine monophosphate	HMDB
3'-CMP	HMDB
3'-Cytidinephosphoric acid	HMDB
3'-Cytosylic acid	HMDB
3’-CMP	HMDB
3’-cytidinephosphoric acid	HMDB
3’-cytosylic acid	HMDB
Cytidine 3’-monophosphate	HMDB
Ribocytidine 3'-monophosphate	HMDB
Ribocytidine 3’-monophosphate	HMDB
Cytidine 3'-monophosphate	ChEBI

Molecular Formula

C₉H₁₄N₃O₈P

Average Mass

323.1965

Monoisotopic Mass

323.051850951

IUPAC Name

Not Available

Traditional Name

Not Available

CAS Registry Number

Not Available

SMILES

Not Available

InChI Identifier

InChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-6(14)7(4(3-13)19-8)20-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1

InChI Key

UOOOPKANIPLQPU-XVFCMESISA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as pentose phosphates. These are carbohydrate derivatives containing a pentose substituted by one or more phosphate groups.

Kingdom

Organic compounds

Super Class

Organic oxygen compounds

Class

Organooxygen compounds

Sub Class

Carbohydrates and carbohydrate conjugates

Direct Parent

Pentose phosphates

Alternative Parents

Substituents

Pentose phosphate
Glycosyl compound
N-glycosyl compound
Monosaccharide phosphate
Hydroxypyrimidine
Monoalkyl phosphate
Hydropyrimidine
Organic phosphoric acid derivative
Phosphoric acid ester
Alkyl phosphate
Pyrimidine
Heteroaromatic compound
Tetrahydrofuran
Secondary alcohol
Organoheterocyclic compound
Azacycle
Oxacycle
Primary alcohol
Organonitrogen compound
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Organic nitrogen compound
Alcohol
Aromatic heteromonocyclic compound

Molecular Framework

Aromatic heteromonocyclic compounds

External Descriptors

cytidine 3'-phosphate (CHEBI:53013 )
pyrimidine ribonucleoside 3'-monophosphate (CHEBI:53013 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Not Available

Spectra

Not Available

Biological Properties

Cellular Locations

Not Available

Biospecimen Locations

Feces
Placenta

Tissue Locations

Placenta

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Bacteroidetes	1	Human ; Human feces	Indirect association between microbiota composition and metabolites measured in host biospecimen
Bacteria	Firmicutes	1	Human stool; Human feces	Indirect association between microbiota composition and metabolites measured in host biospecimen

Exposure Sources

Source Type	Activity	Data Source	Reference
Drugs	Antimicrobial	U.S. Environmental Protection Agency	CompTox
Cosmetics	Not Available	U.S. Environmental Protection Agency	CompTox
Domestics	Not Available	U.S. Environmental Protection Agency	CompTox

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Placenta	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	34986597
Human Feces	Detected but not Quantified						Adult (>18 years old)	Both	Normal	HMDB	29808030

External Links

HMDB ID

HMDB0240312

DrugBank ID

DB01961

Phenol Explorer Compound ID

Not Available

FooDB ID

Not Available

KNApSAcK ID

Not Available

Chemspider ID

59906

KEGG Compound ID

C05822

BioCyc ID

CPD-3711

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

66535

PDB ID

Not Available

ChEBI ID

53013

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Elshenawy S, Pinney SE, Stuart T, Doulias PT, Zura G, Parry S, Elovitz MA, Bennett MJ, Bansal A, Strauss JF 3rd, Ischiropoulos H, Simmons RA: The Metabolomic Signature of the Placenta in Spontaneous Preterm Birth. Int J Mol Sci. 2020 Feb 4;21(3). pii: ijms21031043. doi: 10.3390/ijms21031043. [PubMed:32033212 ]

Showing metabocard for Cytidine 3'-monophosphate (MMDBc0000720)

MOL for #<Metabolite:0x00007fdb5045fc58>

3D MOL for #<Metabolite:0x00007fdb5045fc58>

3D SDF for #<Metabolite:0x00007fdb5045fc58>

3D-SDF for #<Metabolite:0x00007fdb5045fc58>

PDB for #<Metabolite:0x00007fdb5045fc58>

3D PDB for #<Metabolite:0x00007fdb5045fc58>

SMILES for #<Metabolite:0x00007fdb5045fc58>

INCHI for #<Metabolite:0x00007fdb5045fc58>

Structure for #<Metabolite:0x00007fdb5045fc58>

3D Structure for #<Metabolite:0x00007fdb5045fc58>