| MMDBm0097178 | Cyberlindnera jadinii | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0036390 | Trichophyton benhamiae CBS 112371 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098142 | Kluyveromyces lactis NRRL Y-1140 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098297 | Saccharomyces cerevisiae AWRI1631 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098571 | Saccharomyces cerevisiae YJM789 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0029062 | Aspergillus nidulans FGSC A4 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0159119 | Encephalitozoon cuniculi GB-M1 | Fungi | Microsporidia | Not Available | Not Available | RHEA |
| MMDBm0028950 | Aspergillus niger | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0098376 | Saccharomyces cerevisiae RM11-1a | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0001673 | Haloferax volcanii DS2 | Archaea | Euryarchaeota | Not Available | Not Available | RHEA |
| MMDBm0001976 | Tropheryma whipplei str. Twist | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0779569 | Staphylococcus pettenkoferi VCU012 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0392290 | Bacteroides sp. 3_1_23 | Bacteria | Bacteroidetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0730186 | Bacillus thuringiensis serovar thuringiensis str. T01001 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001963 | Thermotoga maritima MSB8 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0001884 | Mycobacterium bovis AF2122/97 | Bacteria | Actinobacteria | Cattle | Not Available | RHEA |
| MMDBm0649080 | Corynebacterium propinquum DSM 44285 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000105 | Citrobacter freundii ATCC 8090 = MTCC 1658 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0682673 | Kocuria palustris PEL | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0692554 | Acidipropionibacterium acidipropionici ATCC 4875 | Bacteria | Actinobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0503763 | Neisseria macacae ATCC 33926 | Bacteria | Proteobacteria | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0002781 | Yersinia enterocolitica subsp. enterocolitica 8081 | Bacteria | Proteobacteria | Human | Metabolic reconstruction | VMH |
