MiMeDB: Haloferax volcanii DS2 (MMDBm0001673)

Microbe Identification

Microbe name

Haloferax volcanii DS2

NCBI Taxonomy ID

309800

Microbe Taxonomy

Superkingdom

Archaea

Kingdom

Archaea

Phylum

Euryarchaeota

Class

Halobacteria

Order

Halobacteriales

Family

Halobacteriaceae

Genus

Haloferax

Species

volcanii

Strain

Microbe Properties

Gram staining properties

Positive

Shape

Bacilli

Mobility

Flagellar presence

Yes

Number of membranes

Oxygen preference

Aerobe

Optimal temperature

Not Available

Temperature range

Mesophilic

Habitat

Aquatic

Biotic relationship

Free living

Cell arrangement

Not Available

Sporulation

Nonsporulating

Metabolism

Not Available

Energy source

Chemoorganotroph

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012864	Acetoacetyl-CoA	(3S)-hydroxy-3-methylglutaryl-CoA	Hydroxymethylglutaryl-CoA synthase erg13A	Synthesis	RHEA	34755880
MMDBr0012895	diphosphate	Phosphoribosyl pyrophosphate	Orotate phosphoribosyltransferase	Transfer of a ribosyl group	RHEA	34755880
MMDBr0012993	Hydroquinone	Semiquinone	Laccase	Oxidation	RHEA	34755880
MMDBr0012995	2,5-Dioxopentanoate	alpha-Ketoglutarate	Alpha-ketoglutaric semialdehyde dehydrogenase 1	Dehydrogenation	RHEA	34755880
MMDBr0013038	diphosphate	Phosphoribosyl pyrophosphate	Tryptophan biosynthesis protein TrpCD	Transfer of a ribosyl group	RHEA	34755880
MMDBr0013202	D-threo-Isocitric acid	glyoxylate	Isocitrate lyase	Non-hydrolytic bond cleavage (or its reversal)	RHEA	34755880
MMDBr0013245	Acetyl-CoA	CoA	L-serine/homoserine O-acetyltransferase	N-Acetylation; Synthesis	RHEA	34755880
MMDBr0013292	Adenosine triphosphate	ADP	1-phosphofructokinase	Phosphorylation	RHEA	34755880
MMDBr0013347	beta-D-Fructose 1,6-bisphosphate	D-Glyceraldehyde 3-phosphate	Fructose-bisphosphate aldolase	Aldol addition (or reverse)	RHEA	34755880
MMDBr0013355	2-Dehydro-3-deoxy-D-gluconate	2-Keto-3-deoxy-6-phosphogluconic acid	2-dehydro-3-deoxygluconokinase	Phosphorylation	RHEA	34755880
MMDBr0013356	2-Dehydro-3-deoxy-D-gluconate	2-Keto-3-deoxy-6-phosphogluconic acid	2-dehydro-3-deoxygluconokinase	Phosphorylation	RHEA	34755880
MMDBr0013382	(6S)-5,6,7,8-tetrahydrofolic acid	7,8-dihydrofolate monoglutamate	Bifunctional dihydrofolate reductase-thymidylate synthase	Reduction	RHEA	34755880
MMDBr0013481	(R)-mevalonate	(3S)-hydroxy-3-methylglutaryl-CoA	3-hydroxy-3-methylglutaryl-coenzyme A reductase	Reduction	RHEA	34755880
MMDBr0013509	Water	Hydrogen Ion	L-arabinolactonase	Hydrolysis	RHEA	34755880
MMDBr0013539	2-Keto-3-deoxy-D-gluconic acid	2-Dehydro-3-deoxy-D-galactonate 6-phosphate	2-dehydro-3-deoxygalactonokinase	Phosphorylation	RHEA	34755880
MMDBr0013540	2-Keto-3-deoxy-D-gluconic acid	2-Dehydro-3-deoxy-D-galactonate 6-phosphate	2-dehydro-3-deoxygluconokinase/2-dehydro-3-deoxygalactonokinase	Phosphorylation	RHEA	34755880
MMDBr0013575	Acetyl-CoA	Citric acid	Citrate (Re)-synthase	Synthesis	RHEA	34755880
MMDBr0013584	Hydrogen cyanide	Hydrogen Ion	Thiosulfate sulfurtransferase GlpE	Sulfuration	RHEA	34755880
MMDBr0013633	Adenosine triphosphate	diphosphate	Probable FAD synthase	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0013702	L-arabinofuranose	Hydrogen Ion	L-arabinose 1-dehydrogenase (NAD(P)(+))	Dehydrogenation	RHEA	34755880
MMDBr0013735	Acetyl-CoA	(S)-malate(2-)	Malate synthase	Synthesis	RHEA	34755880
MMDBr0013756	D-xylono-1,4-lactone	D-xylonate	Pentonolactonase XacC	Hydrolysis	RHEA	34755880
MMDBr0013844	D-xylonate	2-dehydro-3-deoxy-D-arabinonate	D-xylonate dehydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0013902	D-threo-Isocitric acid	alpha-Ketoglutarate	Isocitrate dehydrogenase [NADP]	Dehydrogenation	RHEA	34755880
MMDBr0013930	Glucose 1-phosphate	diphosphate	UTP--glucose-1-phosphate uridylyltransferase AglF	N-Acetylation	RHEA	34755880
MMDBr0013936	6-Hydroxymethyl-dihydropterin pyrophosphate	7,8-Dihydropteroic acid	Dihydropteroate synthase type-1	Reduction; Synthesis	RHEA	34755880
MMDBr0014021	Hydrogen Ion	Hydrogen peroxide	Methanobactin mb-OB3b	Dismutation	RHEA	34755880
MMDBr0014094	Water	5-Hydroxyisourate	Uric acid degradation bifunctional protein	Oxidation; Hydration	RHEA	34755880
MMDBr0014105	(S)-malate(2-)	Hydrogen Ion	Malate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0014114	N-(5-Phospho-D-ribosyl)anthranilate	1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate	Phosphoribosyl isomerase A	Isomerization	RHEA	34755880
MMDBr0014126	Adenosine triphosphate	ADP	Glycerol kinase	Phosphorylation	RHEA	34755880
MMDBr0014163	D-Xylose	D-Xylono-1,5-lactone	D-xylose 1-dehydrogenase (NADP(+))	Dehydrogenation	RHEA	34755880
MMDBr0014340	1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate	(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate	Indole-3-glycerol phosphate synthase	Synthesis	RHEA	34755880
MMDBr0014357	Water	Hydrogen Ion	UDP-glucose 6-dehydrogenase AglM	Dehydrogenation	RHEA	34755880
MMDBr0014377	alpha-Ketoglutarate	3-(Imidazol-4-yl)-2-oxopropyl phosphate	Histidinol-phosphate aminotransferase	Amine group addition	RHEA	34755880
MMDBr0014461	diphosphate	Hydrogen Ion	Inorganic pyrophosphatase	Dephosphorylation	RHEA	34755880
MMDBr0014591	Guanosine triphosphate	7,8-dihydroneopterin 2',3'-cyclic phosphate	GTP cyclohydrolase MptA	Hydrolysis	RHEA	34755880
MMDBr0014634	5-Hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate	(S)(+)-Allantoin	Uric acid degradation bifunctional protein	Decarboxylation	RHEA	34755880
MMDBr0014944	Adenosine triphosphate	ADP	Xylose/arabinose import ATP-binding protein XacJ	Transport	RHEA	34755880
MMDBr0014945	Adenosine triphosphate	ADP	Xylose/arabinose import ATP-binding protein XacJ	Transport	RHEA	34755880
MMDBr0014948	Adenosine triphosphate	ADP	L-arabinose transport ATP-binding protein AraG	Transport	RHEA	34755880
MMDBr0014949	Adenosine triphosphate	ADP	Xylose/arabinose import ATP-binding protein XacJ	Transport	RHEA	34755880
MMDBr0015131	Ribose 1,5-bisphosphate	D-Ribulose 1,5-bisphosphate	Ribose 1,5-bisphosphate isomerase	Isomerization	RHEA	34755880
MMDBr0015133	3-Isopropylmalate	Ketoleucine	3-isopropylmalate dehydrogenase AMT6	Dehydrogenation	RHEA	34755880
MMDBr0015136	3-Isopropylmalate	2-Isopropylmalic acid	3-isopropylmalate dehydratase large subunit gloJ	Isomerization	RHEA	34755880
MMDBr0015189	6-Phosphogluconic acid	Carbon dioxide	6-phosphogluconate dehydrogenase, NAD(+)-dependent, decarboxylating	Dehydrogenation	RHEA	34755880
MMDBr0015288	Adenosine triphosphate	ADP	Isopentenyl phosphate kinase	Phosphorylation	RHEA	34755880
MMDBr0015425	Adenosine triphosphate	3',3'-c-di-AMP	Cyclic di-AMP synthase CdaA	Cycle formation; Synthesis	RHEA	34755880
MMDBr0015449	2-dehydro-3-deoxy-D-arabinonate	2,5-Dioxopentanoate	2-dehydro-3-deoxy-D-arabinonate dehydratase	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0015619	aldehydo-D-glucose 6-phosphate	6-Phosphonoglucono-D-lactone	NAD-dependent glucose-6-phosphate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0015769	Mevalonic acid-5P	ADP	Phosphomevalonate decarboxylase	Decarboxylation	RHEA	34755880
MMDBr0015863	L-arabinofuranose	Hydrogen Ion	L-arabinose 1-dehydrogenase (NAD(P)(+))	Dehydrogenation	RHEA	34755880
MMDBr0016907	Adenosine triphosphate	ADP	ATP synthase subunit alpha	ATP hydrolysis; Synthesis	RHEA	34755880
MMDBr0016928	Lycopene	dihydroisopentenyldehydrorhodopin	C(50) beta-cyclic carotenoids biosynthesis protein LbtBC	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0016929	Dimethylallylpyrophosphate	dihydrobisanhydrobacterioruberin	C(50) beta-cyclic carotenoids biosynthesis protein LbtBC	Hydration/dehydration of C-O bond	RHEA	34755880
MMDBr0017050	Adenosine triphosphate	ADP	Glucose import ATP-binding protein GlcV	Transport	RHEA	34755880
MMDBr0017051	Adenosine triphosphate	ADP	Glucose import ATP-binding protein GlcV	Transport	RHEA	34755880
MMDBr0017356	(2S)-2-phospholactic acid	(2S)-lactyl-2-diphospho-5'-guanosine	2-phospho-L-lactate guanylyltransferase	Transfer of a GMP	RHEA	34755880
MMDBr0017834	(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate	D-Glyceraldehyde 3-phosphate	Tryptophan synthase	Synthesis	RHEA	34755880
MMDBr0017852	Adenosine triphosphate	ADP	Glutamate--cysteine ligase EgtA	Ligation	RHEA	34755880
MMDBr0017876	Adenosine triphosphate	ADP	Glutamine synthetase	Synthesis	RHEA	34755880
MMDBr0017905	Chorismate	2-Aminobenzoic acid	Aminodeoxychorismate/anthranilate synthase component 2	Synthesis	RHEA	34755880
MMDBr0024353	L-Glutamic acid	Hydrogen Ion	Probable bifunctional folylpolyglutamate synthase/dihydropteroate synthase	Synthesis	RHEA	34755880
MMDBr0024386	Selenocysteine	Hydrogen Ion	Cysteine desulfurase	Desulfuration	RHEA	34755880
MMDBr0024493	NAD	Hydrogen Ion	Dihydrolipoyl dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024586	L-Serine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0024612	Glycerol 3-phosphate	Dihydroxyacetone phosphate	Probable anaerobic glycerol-3-phosphate dehydrogenase subunit B	Dehydrogenation	RHEA	34755880
MMDBr0024757	L-Histidine	Pyruvic acid	Phosphoenolpyruvate-protein phosphotransferase	Transfer of phosphate group	RHEA	34755880
MMDBr0025130	7-Cyano-7-carbaguanine	Guanine	tRNA-guanine(15) transglycosylase	Glycosidic bond hydrolysis	RHEA	34755880
MMDBr0025173	Water	Hydrogen Ion	tRNA(Met) cytidine acetyltransferase TmcA	N-Acetylation	RHEA	34755880
MMDBr0025237	L-Threonine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0025318	D-Fructofuranose	L-Histidine	PTS system fructose-specific EIIB component	Phosphorylation	RHEA	34755880
MMDBr0025480	Water	L-Glutamic acid	Archaeosine synthase	Synthesis	RHEA	34755880
MMDBr0025501	Tetra-mu3-sulfido-tetrairon(2+)	Hydrogen Ion	Digeranylgeranylglycerophospholipid reductase	Reduction	RHEA	34755880
MMDBr0025563	S-Adenosylmethionine	Hydrogen Ion	tRNA (pseudouridine(54)-N(1))-methyltransferase	Methylation	RHEA	34755880
MMDBr0025573	L-Cysteine	Water	Thiamine thiazole synthase	Synthesis	RHEA	34755880
MMDBr0025586	Hydrogen Ion	diphosphate	SAMP-activating enzyme E1	Not Available	RHEA	34755880
MMDBr0025597	UDP-Glucuronic acid	Hydrogen Ion	Glucosyl-dolichyl phosphate glucuronosyltransferase	Transfer of a glucuronosyl group	RHEA	34755880
MMDBr0025598	UDP-Glucuronic acid	Hydrogen Ion	Glucosyl-dolichyl phosphate glucuronosyltransferase	Transfer of a glucuronosyl group	RHEA	34755880
MMDBr0025650	Hydrogen Ion	Hydrogen Ion	NADH-quinone oxidoreductase subunit C/D	Redox reaction	RHEA	34755880
MMDBr0025850	NADP(+)	Hydrogen Ion	D-xylose 1-dehydrogenase [NADP(+)] 1	Dehydrogenation	RHEA	34755880

Genome Data

Genome Link

Not Available

Genome Length

Not Available

# Predicted Proteins

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

Reference

PMID: 17704766

Source Links

GenBank