MiMeDB: Saccharomyces cerevisiae YJM789 (MMDBm0098571)

Microbe Identification

Microbe name

Saccharomyces cerevisiae YJM789

NCBI Taxonomy ID

307796

Microbe Taxonomy

Superkingdom

Eukaryota

Kingdom

Fungi

Phylum

Ascomycota

Class

Saccharomycetes

Order

Saccharomycetales

Family

Saccharomycetaceae

Genus

Saccharomyces

Species

cerevisiae

Strain

Not Available

Microbe Properties

Gram staining properties

Positive

Shape

Not Available

Mobility

Not Available

Flagellar presence

Not Available

Number of membranes

Not Available

Oxygen preference

Not Available

Optimal temperature

Not Available

Temperature range

Not Available

Habitat

Not Available

Biotic relationship

Not Available

Cell arrangement

Not Available

Sporulation

Not Available

Metabolism

Not Available

Energy source

Not Available

Host and Biospecimens

Host	Body site	Biospecimen	Details	Data Source	Reference
Human	Gut	Feces	Expected but not quantified

Health Effects

Host	Related Health Condition	Biospecimen	Microbal response/effect	Data Source	Reference

Related Metabolites

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Reaction Type	Data Source	Reference
MMDBr0012997	Acetyl-CoA	ADP	Acetyl-CoA carboxylase	Carboxylation	RHEA	34755880
MMDBr0013130	6-Phosphonoglucono-D-lactone	6-Phosphogluconic acid	6-phosphogluconolactonase	Hydrolysis	RHEA	34755880
MMDBr0013170	Adenosine monophosphate	ADP	Adenylate kinase	Phosphorylation	RHEA	34755880
MMDBr0013179	Adenosine triphosphate	ADP	Replicase large subunit	Synthesis of a primer	RHEA	34755880
MMDBr0013187	Adenosine triphosphate	Shikimate 3-phosphate	Pentafunctional AROM polypeptide	Phosphorylation	RHEA	34755880
MMDBr0013261	Water	ADP	Bis(5'-adenosyl)-triphosphatase	Dephosphorylation	RHEA	34755880
MMDBr0013339	aldehydo-D-ribose 5-phosphate	D-Ribulose 5-phosphate	Bifunctional ribokinase/ribose-5-phosphate isomerase A	Isomerization	RHEA	34755880
MMDBr0013416	L-Glutamic acid	Ornithine	Arginine biosynthesis bifunctional protein ArgJ	Acetylation; Synthesis	RHEA	34755880
MMDBr0013437	5-Methylthioribulose 1-phosphate	5-(methylsulfanyl)-2,3-dioxopentyl phosphate	Probable bifunctional methylthioribose-1-phosphate isomerase/methylthioribulose-1-phosphate dehydratase	Dehydration and isomerisation	RHEA	34755880
MMDBr0013458	Guanosine triphosphate	Guanosine diphosphate	Adenylosuccinate synthetase	Synthesis	RHEA	34755880
MMDBr0013480	formate	Carbon dioxide	Formate dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0013681	NADP(+)	3-Dehydroshikimic acid	Pentafunctional AROM polypeptide	Dehydrogenation	RHEA	34755880
MMDBr0013735	Acetyl-CoA	(S)-malate(2-)	Malate synthase	Synthesis	RHEA	34755880
MMDBr0013908	Guanosine triphosphate	Guanosine diphosphate	GTPase ArgK	Dephosphorylation; Hydrolysis; Nucleic acid synthesis and/or repair	RHEA	34755880
MMDBr0013941	S-Methyl-5-thio-alpha-D-ribose 1-phosphate	5-Methylthioribulose 1-phosphate	5-deoxyribose 1-phosphate isomerase	Isomerization	RHEA	34755880
MMDBr0013978	Hydrogen peroxide	Water	Bromoperoxidase-catalase	Synthesis	RHEA	34755880
MMDBr0014068	3-Dehydroquinate	3-Dehydroshikimic acid	Catabolic 3-dehydroquinase	Hydration/dehydration of C-O bond; Synthesis	RHEA	34755880
MMDBr0014083	Shikimate 3-phosphate	5-O-(1-Carboxyvinyl)-3-phosphoshikimate	Pentafunctional AROM polypeptide	Synthesis; Dehydration and isomerisation; Oxidation; Phosphorylation; Transfer of a carboxyvinyl group	RHEA	34755880
MMDBr0014134	5-(methylsulfanyl)-2,3-dioxopentyl phosphate	1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one	Enolase-phosphatase E1	Enolization	RHEA	34755880
MMDBr0014160	3-deoxy-D-arabino-heptulosonate-7-phosphate	3-Dehydroquinate	Pentafunctional AROM polypeptide	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0014181	S-Adenosylmethionine	(E)-2-(methoxycarbonylmethyl)but-2-enedioic acid	Trans-aconitate 3-methyltransferase	Methylation	RHEA	34755880
MMDBr0014436	Acetyl-CoA	CoA	Amino-acid acetyltransferase	Acetylation; Synthesis	RHEA	34755880
MMDBr0014507	ADP-D-ribose 1''-phosphate	ADP-D-ribose	ADP-ribose 1''-phosphate phosphatase	Dephosphorylation	RHEA	34755880
MMDBr0017926	Adenosine triphosphate	ADP	CTP synthase	Synthesis	RHEA	34755880
MMDBr0014857	Fe2+	Iron(3+)	Ferric-chelate reductase (NAD(P)H)	Reduction	RHEA	34755880
MMDBr0016254	Iron(3+)	Fe2+	NADH-cytochrome b5 reductase 2	Reduction	RHEA	34755880
MMDBr0017851	Fructose 6-phosphate	D-glucosamine 6-phosphate	Glutamine--fructose-6-phosphate aminotransferase [isomerizing]	Amine group addition	RHEA	34755880
MMDBr0017884	L-Serine	Ammonium	L-serine dehydratase	Hydration/dehydration of C-O bond; Non-hydrolytic bond cleavage (or its reversal); Racemization	RHEA	34755880
MMDBr0024353	L-Glutamic acid	Hydrogen Ion	Probable bifunctional folylpolyglutamate synthase/dihydropteroate synthase	Synthesis	RHEA	34755880
MMDBr0024361	NAD	Hydrogen Ion	Alcohol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024363	NAD	Hydrogen Ion	NAD-dependent alcohol dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024370	S-Adenosylmethionine	Hydrogen Ion	Phosphatidylethanolamine N-methyltransferase	Methylation	RHEA	34755880
MMDBr0024398	Water	Hydrogen Ion	NADP/NAD-dependent aldehyde dehydrogenase PuuC	Dehydrogenation	RHEA	34755880
MMDBr0024451	Hydrogen carbonate	Hydrogen Ion	Propionyl-CoA carboxylase, biotin carboxylase and biotin-carboxyl carrier subunit	Carboxylation	RHEA	34755880
MMDBr0024490	Uridine diphosphate-N-acetylglucosamine	Hydrogen Ion	Phosphatidylinositol N-acetylglucosaminyltransferase GPI3 subunit	Transfer of N-acetylglucosamine	RHEA	34755880
MMDBr0024526	Water	Hydrogen Ion	Aldehyde dehydrogenase	Dehydrogenation	RHEA	34755880
MMDBr0024539	Hydrogen Ion	5'-Deoxyadenosine	Lipoyl synthase	Synthesis	RHEA	34755880
MMDBr0024568	Water	Hydrogen Ion	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	Amide group addition	RHEA	34755880
MMDBr0024586	L-Serine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0024720	Uridine diphosphate glucose	Hydrogen Ion	Sterol 3-beta-glucosyltransferase	Transfer of a glucosyl group	RHEA	34755880
MMDBr0024738	L-Tyrosine	Hydrogen Ion	Glycogenin-2	Glycogen synthesis	RHEA	34755880
MMDBr0024752	Sphingosine	Hydrogen Ion	Sphingosine N-acyltransferase LAG1	Acylation	RHEA	34755880
MMDBr0025071	S-Adenosylmethionine	S-Adenosylhomocysteine	tRNA (guanine-N(7)-)-methyltransferase	Methylation	RHEA	34755880
MMDBr0025237	L-Threonine	Hydrogen Ion	Probable bifunctional tRNA threonylcarbamoyladenosine biosynthesis protein	Phosphorylation; Synthesis	RHEA	34755880
MMDBr0025305	NADP(+)	Hydrogen Ion	Very-long-chain 3-oxoacyl-CoA reductase	Reduction	RHEA	34755880
MMDBr0025320	Adenosine triphosphate	Hydrogen Ion	Lipoate-protein ligase A subunit 1	Ligation	RHEA	34755880
MMDBr0025452	NADP(+)	Hydrogen Ion	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025453	Hydrogen Ion	NADP(+)	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025454	NAD	Hydrogen Ion	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025455	Hydrogen Ion	NAD	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]	Synthesis	RHEA	34755880
MMDBr0025617	Uridine diphosphate glucose	Hydrogen Ion	Glycogenin-2	Glycogen synthesis	RHEA	34755880

Genome Data

Genome Link

MMDBm0098571

Genome Length

12162295 bp

# Predicted Proteins

280

GenBank Sequence Modification Date

17-FEB-2022

MiMeDB Deposition Date

2022-08-25 01:16:54 UTC

Reference

PMID: 17704766

Source Links

GenBank

AAFW00000000