MiMeDB: Showing metabocard for Ornithine (MMDBc0000072)

Record Information

Version

1.0

Status

Detected and Quantified

Creation Date

2020-10-27 23:29:21 UTC

Update Date

2024-10-11 02:12:28 UTC

Metabolite ID

MMDBc0000072

Metabolite Identification

Common Name

Ornithine

Description

L-ornithine, also known as (S)-2,5-diaminopentanoic acid or ornithine is a member of the class of compounds known as L-alpha-amino acids. L-alpha-amino acids are alpha amino acids which have the L-configuration of the alpha-carbon atom. L-ornithine is soluble (in water) and a moderately acidic compound. It has been claimed that ornithine improves athletic performance, has anabolic effects, has wound-healing effects, and is immuno-enhancing. L-ornithine is abundant in a number of food items such as wild rices, brazil nuts, common oregano, and common grapes. L-ornithine can be found throughout most human tissues; and in most biofluids, some of which include blood, urine, cerebrospinal fluid (CSF), sweat, saliva, and feces. Within the cell, L-ornithine is located in the mitochondria and the cytoplasm. L-ornithine exists in all living species, from bacteria to humans. In humans, L-ornithine is involved in numerous metabolic disorders, some of which include, ornithine transcarbamylase deficiency (OTC deficiency), argininemia, and guanidinoacetate methyltransferase deficiency (GAMT deficiency). Moreover, Ornithine is found to be associated with cystinuria, hyperdibasic aminoaciduria I, and lysinuric protein intolerance, which are inborn errors of metabolism. Ornithine is produced in the urea cycle through the cleavage of urea from arginine. It is a central part of the urea cycle, which allows for the disposal of excess nitrogen. L-Ornithine is also a precursor of citrulline and arginine. In order for ornithine produced in the cytosol to be converted to citrulline, it must first cross the inner mitochondrial membrane into the mitochondrial matrix where it is carbamylated by ornithine transcarbamylase. This transfer is mediated by the mitochondrial ornithine transporter (SLC25A15; AF112968; ORNT1). Mutations in the mitochondrial ornithine transporter result in hyperammonemia, hyperornithinemia, homocitrullinuria (HHH) syndrome, a disorder of the urea cycle (PMID: 16256388 ). The pathophysiology of the disease may involve diminished ornithine transport into mitochondria, resulting in ornithine accumulation in the cytoplasm and reduced ability to clear carbamoyl phosphate and ammonia loads (OMIM 838970 ).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI

Synonyms

Value	Source
(S)-2,5-Diaminopentanoate	ChEBI
(S)-2,5-Diaminopentanoic acid	ChEBI
(S)-2,5-Diaminovaleric acid	ChEBI
(S)-alpha,delta-Diaminovaleric acid	ChEBI
(S)-Ornithine	ChEBI
(S)-2,5-Diaminovalerate	Generator
(S)-a,delta-Diaminovalerate	Generator
(S)-a,delta-Diaminovaleric acid	Generator
(S)-alpha,delta-Diaminovalerate	Generator
(S)-Α,δ-diaminovalerate	Generator
(S)-Α,δ-diaminovaleric acid	Generator
(S)-a,Δ-diaminovalerate	HMDB
(S)-a,Δ-diaminovaleric acid	HMDB
(+)-S-Ornithine	HMDB
(S)-a,D-Diaminovalerate	HMDB
(S)-a,D-Diaminovaleric acid	HMDB
5-Amino-L-norvaline	HMDB
L-(-)-Ornithine	HMDB
L-Ornithine	HMDB
2,5-Diaminopentanoic acid	HMDB
Ornithine dihydrochloride, (L)-isomer	HMDB
Ornithine hydrochloride, (D)-isomer	HMDB
Ornithine, (D)-isomer	HMDB
Ornithine, (L)-isomer	HMDB
2,5 Diaminopentanoic acid	HMDB
Ornithine monoacetate, (L)-isomer	HMDB
Ornithine monohydrochloride, (D)-isomer	HMDB
Ornithine monohydrochloride, (DL)-isomer	HMDB
Ornithine phosphate (1:1), (L)-isomer	HMDB
Ornithine sulfate (1:1), (L)-isomer	HMDB
Ornithine hydrochloride, (DL)-isomer	HMDB
Ornithine hydrochloride, (L)-isomer	HMDB
Ornithine monohydrobromide, (L)-isomer	HMDB
Ornithine, (DL)-isomer	HMDB

Molecular Formula

C₅H₁₂N₂O₂

Average Mass

132.161

Monoisotopic Mass

132.089877638

IUPAC Name

(2S)-2,5-diaminopentanoic acid

Traditional Name

ornithine

CAS Registry Number

3184-13-2

SMILES

NCCC[C@H](N)C(O)=O

InChI Identifier

InChI=1S/C5H12N2O2/c6-3-1-2-4(7)5(8)9/h4H,1-3,6-7H2,(H,8,9)/t4-/m0/s1

InChI Key

AHLPHDHHMVZTML-BYPYZUCNSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as l-alpha-amino acids. These are alpha amino acids which have the L-configuration of the alpha-carbon atom.

Kingdom

Organic compounds

Super Class

Organic acids and derivatives

Class

Carboxylic acids and derivatives

Sub Class

Amino acids, peptides, and analogues

Direct Parent

L-alpha-amino acids

Alternative Parents

Substituents

L-alpha-amino acid
Fatty acid
Amino acid
Carboxylic acid
Monocarboxylic acid or derivatives
Amine
Hydrocarbon derivative
Organic oxide
Organopnictogen compound
Primary amine
Organooxygen compound
Organonitrogen compound
Organic oxygen compound
Primary aliphatic amine
Organic nitrogen compound
Carbonyl group
Aliphatic acyclic compound

Molecular Framework

Aliphatic acyclic compounds

External Descriptors

non-proteinogenic L-alpha-amino acid (CHEBI:15729 )
ornithine (CHEBI:15729 )
Other amino acids (C00077 )

Functional Ontology

Not Available

Physical Properties

State

Expected Solid

Predicted Properties

Property	Value	Source
Water Solubility	172 g/L	ALOGPS
logP	-3.6	ALOGPS
logP	-3.7	ChemAxon
logS	0.11	ALOGPS
pKa (Strongest Acidic)	2.67	ChemAxon
pKa (Strongest Basic)	10.29	ChemAxon
Physiological Charge	1	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	89.34 Å²	ChemAxon
Rotatable Bond Count	4	ChemAxon
Refractivity	33.21 m³·mol⁻¹	ChemAxon
Polarizability	13.85 Å³	ChemAxon
Number of Rings	0	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Spectra

Spectrum Type	Description	Splash Key	Deposition Date	View
GC-MS	GC-MS Spectrum - GC-EI-TOF (Pegasus III TOF-MS system, Leco; GC 6890, Agilent Technologies) (2 TMS)	splash10-0006-1920000000-b0357b8c9888abda7d80	2014-06-16	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Pegasus III TOF-MS system, Leco; GC 6890, Agilent Technologies) (Non-derivatized)	splash10-0006-0910000000-8aaa0faabf1429b90611	2014-06-16	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Pegasus III TOF-MS system, Leco; GC 6890, Agilent Technologies) (2 TMS)	splash10-00di-7910000000-5fa118444ceb45204aa3	2014-06-16	View Spectrum
GC-MS	GC-MS Spectrum - GC-MS (3 TMS)	splash10-006x-3910000000-f6d0c6492f2cab33a392	2014-06-16	View Spectrum
GC-MS	GC-MS Spectrum - GC-MS (3 TMS)	splash10-00dr-2900000000-77222ff2d0118d3d3b57	2014-06-16	View Spectrum
GC-MS	GC-MS Spectrum - GC-MS (4 TMS)	splash10-0006-1910000000-53c73c4fa3665c44d3b9	2014-06-16	View Spectrum
GC-MS	GC-MS Spectrum - GC-MS (5 TMS)	splash10-03di-1691000000-dc14976cfee86cc828b9	2014-06-16	View Spectrum
GC-MS	GC-MS Spectrum - EI-B (Non-derivatized)	splash10-0006-0920000000-f65f61e4a3739eabb1d1	2017-09-12	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-0006-1920000000-b0357b8c9888abda7d80	2017-09-12	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-0006-0910000000-8aaa0faabf1429b90611	2017-09-12	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-00di-7910000000-5fa118444ceb45204aa3	2017-09-12	View Spectrum
GC-MS	GC-MS Spectrum - GC-MS (Non-derivatized)	splash10-006x-3910000000-f6d0c6492f2cab33a392	2017-09-12	View Spectrum
GC-MS	GC-MS Spectrum - GC-MS (Non-derivatized)	splash10-00dr-2900000000-77222ff2d0118d3d3b57	2017-09-12	View Spectrum
GC-MS	GC-MS Spectrum - GC-MS (Non-derivatized)	splash10-0006-1910000000-53c73c4fa3665c44d3b9	2017-09-12	View Spectrum
GC-MS	GC-MS Spectrum - GC-MS (Non-derivatized)	splash10-03di-1691000000-dc14976cfee86cc828b9	2017-09-12	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-0006-0900000000-f59681b9f46f1b738487	2017-09-12	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-0006-0900000000-3048477975b51ae176af	2017-09-12	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-00dr-2900000000-8d1a2cc0a88f7d9216e1	2017-09-12	View Spectrum
GC-MS	GC-MS Spectrum - GC-EI-TOF (Non-derivatized)	splash10-0udi-1900000000-bc40b76e8b03ef7a08f0	2017-09-12	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	splash10-001l-9000000000-50fe14c2cb68fd09e32f	2016-09-22	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (1 TMS) - 70eV, Positive	splash10-0089-9300000000-bbfdea03043e52ad8a15	2017-10-06	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_2) - 70eV, Positive	Not Available	2021-11-05	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - GC-MS (TMS_1_3) - 70eV, Positive	Not Available	2021-11-05	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - Quattro_QQQ 10V, Positive (Annotated)	splash10-01b9-6900000000-8fe592b77d2d8e4ae704	2012-07-24	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - Quattro_QQQ 25V, Positive (Annotated)	splash10-00di-9000000000-462b84db532c33527580	2012-07-24	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - Quattro_QQQ 40V, Positive (Annotated)	splash10-00di-9000000000-9c9c28d2e40d5eadacd2	2012-07-24	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Positive	splash10-001i-0900000000-e44e06092c06bb4791af	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Positive	splash10-014i-9000000000-4d6ccc429f5155b24654	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Positive	splash10-014i-0900000000-dcad699e8ed7e1b19860	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Positive	splash10-001i-0900000000-7b130437d4e1ceea277b	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Positive	splash10-001i-0900000000-0fae230bc6b21623a4bf	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Positive	splash10-014i-9000000000-5a350a8e7c607a8b9a60	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Positive	splash10-014i-0900000000-516054b6c2f3cd4a1d02	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Negative	splash10-000i-0793321000-9fef988b5ce019f84642	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Negative	splash10-03di-0900000000-a612df8df5f8ba1ff7f3	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Negative	splash10-001i-0910000000-97fad20414656e2b7b93	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-ITFT (LTQ Orbitrap XL, Thermo Scientfic) , Negative	splash10-01di-0490000000-1b137b937beb110d2e4b	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QQ (API3000, Applied Biosystems) 10V, Negative	splash10-001i-0900000000-e3fc95eb909e45d8e648	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QQ (API3000, Applied Biosystems) 20V, Negative	splash10-001i-1900000000-cdd9aac89a5a71814ff3	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QQ (API3000, Applied Biosystems) 30V, Negative	splash10-001r-9500000000-f1cc3eccf3f5ab734222	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QQ (API3000, Applied Biosystems) 10V, Positive	splash10-0159-0900000000-93ce7b142d1f82f17e95	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QQ (API3000, Applied Biosystems) 20V, Positive	splash10-00di-9200000000-186f270471bdec40f804	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QQ (API3000, Applied Biosystems) 30V, Positive	splash10-00di-9000000000-ebbdf0ab6d3180cba1a5	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QQ (API3000, Applied Biosystems) 40V, Positive	splash10-00di-9000000000-207bcc826fb2238c2cc5	2012-08-31	View Spectrum
LC-MS/MS	LC-MS/MS Spectrum - LC-ESI-QQ (API3000, Applied Biosystems) 50V, Positive	splash10-00di-9000000000-a2f9a950fb23a6b18857	2012-08-31	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 10V, Positive	splash10-01c9-9700000000-0364d35bb1a7c10a09c7	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 20V, Positive	splash10-00dr-9100000000-9c4015733140885b4957	2016-09-12	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 40V, Positive	splash10-00dl-9000000000-b32e7180e30a835008bb	2016-09-12	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, H₂O, experimental)		2012-12-04	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 125 MHz, H₂O, experimental)		2012-12-04	View Spectrum
1D NMR	¹H NMR Spectrum (1D, D₂O, experimental)		2016-10-22	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 100 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 200 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 300 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 500 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 600 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 700 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 800 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 900 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹H NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 1000 MHz, D₂O, predicted)		2021-09-16	View Spectrum
1D NMR	¹³C NMR Spectrum (1D, 400 MHz, H₂O, experimental)		2021-10-10	View Spectrum
2D NMR	[¹H, ¹H]-TOCSY. Unexported temporarily by An Chi on Oct 15, 2021 until json or nmrML file is generated. 2D NMR Spectrum (experimental)		2012-12-04	View Spectrum
2D NMR	[¹H, ¹³C]-HSQC NMR Spectrum (2D, 600 MHz, H₂O, experimental)		2012-12-05	View Spectrum

Biological Properties

Cellular Locations

Extracellular
Mitochondria

Biospecimen Locations

Blood
Cerebrospinal Fluid (CSF)
Epidermis
Feces
Intestine
Liver
Prostate
Saliva
Sweat
Urine

Tissue Locations

Epidermis
Intestine
Liver
Prostate

Associated OMIM IDs

114500 (Colorectal cancer)
610247 (Eosinophilic esophagitis)

Human Proteins and Enzymes

Protein ID	Protein Name	Protein Type	Uniprot ID	Species
MMDBp0191968	Arginase-1	Unknown	P05089	Homo sapiens
MMDBp0192067	Ornithine aminotransferase, mitochondrial	Enzyme	P04181	Homo sapiens
MMDBp0192122	Glycine amidinotransferase, mitochondrial	Enzyme	P50440	Homo sapiens
MMDBp0192200	Aminoacylase-1	Unknown	Q03154	Homo sapiens
MMDBp0192474	Delta-1-pyrroline-5-carboxylate synthase	Enzyme	P54886	Homo sapiens
MMDBp0192545	Ornithine carbamoyltransferase, mitochondrial	Enzyme	P00480	Homo sapiens
MMDBp0192645	Ornithine decarboxylase	Enzyme	P11926	Homo sapiens
MMDBp0192646	Arginase-2, mitochondrial	Unknown	P78540	Homo sapiens
MMDBp0193279	Cationic amino acid transporter 4	Enzyme	O43246	Homo sapiens
MMDBp0193492	Mitochondrial ornithine transporter 1	Enzyme	Q9Y619	Homo sapiens
MMDBp0193788	Mitochondrial ornithine transporter 2	Enzyme	Q9BXI2	Homo sapiens
MMDBp0193822	Cationic amino acid transporter 3	Unknown	Q8WY07	Homo sapiens
MMDBp0193872	High affinity cationic amino acid transporter 1	Enzyme	P30825	Homo sapiens
MMDBp0193916	Low affinity cationic amino acid transporter 2	Enzyme	P52569	Homo sapiens
MMDBp0195850	Y+L amino acid transporter 2	Unknown	Q92536	Homo sapiens
MMDBp0196292	Ornithine decarboxylase antizyme 1	Enzyme	P54368	Homo sapiens
MMDBp0196293	Ornithine decarboxylase antizyme 2	Enzyme	O95190	Homo sapiens
MMDBp0196294	Ornithine decarboxylase antizyme 3	Enzyme	Q9UMX2	Homo sapiens
MMDBp0196295	Antizyme inhibitor 1	Enzyme	O14977	Homo sapiens

Human Pathways

Pathways

Name	SMPDB/PathBank

Metabolic Reactions

Reactions

Reaction ID	Precursor	Product	Enzyme	Data Source	Reference
MMDBr0000199	N2-Acetylornithine	Acetic acid	aminoacylase 1	VMH; KEGG	2006156
MMDBr0000331	L-Arginine	Ornithine	arginase 2	VMH; KEGG	9144563
MMDBr0000819	Ornithine	5-Amino-2-oxopentanoic acid	D-amino-acid oxidase	VMH; KEGG	8103425 9153402
MMDBr0001350	L-Arginine	Guanidoacetic acid	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	VMH	8547310
MMDBr0001815	Carbamoylphosphate	Citrulline	ornithine carbamoyltransferase	VMH; KEGG	30371894
MMDBr0001835	Oxoglutaric acid	L-Glutamic acid	ornithine aminotransferase	VMH; KEGG	30371894
MMDBr0007129	Carbamoylphosphate	Citrulline	Not Available	VMH	30371894
MMDBr0007130	N2-Acetylornithine	N-Acetylglutamic acid	Not Available	VMH	30371894
MMDBr0007269	L-Arginine	Ornithine	Not Available	VMH; KEGG	30371894
MMDBr0007698	N2-Acetylornithine	Acetic acid	Not Available	VMH	30371894
MMDBr0007932	Ornithine	Putrescine	Not Available	VMH; KEGG	30371894
MMDBr0008124	Oxoglutaric acid	L-Glutamic acid	Not Available	VMH	30371894
MMDBr0008196	Ornithine	L-Proline	Not Available	VMH	30371894
MMDBr0008270	Ornithine	N2-Succinyl-L-ornithine	Not Available	VMH	30371894
MMDBr0010286	Ornithine	Putrescine	ornithine decarboxylase 1	VMH; KEGG	30371894
MMDBr0010847	Citrulline	Ornithine	Not Available	VMH	30371894

Health Effects and Bioactivity

Health Outcome/Bioactivity	Metabolite Response/Effect	Evidence Type	Host and Biospecimen	Data Source	Reference
Alzheimer's disease	Increased	Association	Human Urine	HMDB	17031479
Alzheimer's disease	Increased	Association	Human Saliva	HMDB	23857558
Alzheimer's disease		Association	Human Blood	HMDB	17031479
Cystinuria	Increased	Association	Human Urine	HMDB	14586528
Frontotemporal dementia	Slight Increase	Association	Human Saliva	HMDB	23857558
Fumarase deficiency		Association	Human Blood	HMDB	20549362
Fumarase deficiency	Increased	Association	Human Urine	HMDB	20549362
Hyperdibasic aminoaciduria i	Increased	Association	Human Urine	HMDB	5727921
Leukemia		Association	Human Cerebrospinal Fluid (CSF)	HMDB	15911239
Lysinuric protein intolerance	Slight Decrease	Association	Human Blood	HMDB	28028301
Lysinuric protein intolerance	Increased	Association	Human Urine	HMDB	28028301
Lysinuric protein intolerance	Decreased	Association	Human Blood	HMDB	27506743
N-acetylglutamate synthetase deficiency		Association	Human Blood	HMDB	7623444
N-acetylglutamate synthetase deficiency		Association	Human Blood	HMDB	2044610
Ornithine transcarbamylase deficiency	Decreased	Association	Human Blood	HMDB	16635166
Uremia	Slight Increase	Association	Human Blood	HMDB	11865086
Eosinophilic esophagitis		Association	Human Urine	HMDB	Slae, M., Huynh, H., Wishart, D.S. (2014). Analysis of 30 normal pediatric urine samples via NMR spectroscopy (unpublished work)
Eosinophilic esophagitis	Slight Decrease	Association	Human Urine	HMDB	Slae, M., Huynh, H., Wishart, D.S. (2014). Analysis of 30 normal pediatric urine samples via NMR spectroscopy (unpublished work)
Lysinuric protein intolerance	Slight Decrease	Association	Human Blood	HMDB	Lysinuric Protein Intolerance and Other Cationic Aminoacidurias. The metabolic and molecular bases of inherited disease, 7/e; Editors: C.R.Scriver, A.L.Beaudet, W.S.Sly, D.Valle; McGraw-Hill Inc. (1995) DOI: 10.1036/ommbid.225
Obesity	Slight Increase	Association	Human Blood	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children
Obesity	Slight Increase	Association	Human Blood	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children
Cystinuria	Increased	Association	Human Urine	HMDB	MetaGene: Metabolic & Genetic Information Center (MIC: http://www.metagene.de)
Cystinuria	Increased	Association	Human Urine	HMDB	MetaGene: Metabolic & Genetic Information Center (MIC: http://www.metagene.de)

Microbial Sources

Superkingdom/Kingdom	Phylum	Total species	Hosts and Body Sites	Microbial Links
Bacteria	Synergistetes	8	Human feces	Microbial culture; Metabolic reconstruction
Bacteria	Proteobacteria	538	Human ; Human mucosa; Human stool; Human supragingival plaque; Human feces; Human saliva; Human subgingival plaque; Human sputum; Human unknown; Pig ; Human pleural fluid plaque; Human dental plaque; Human nasal swab; Human feces; pleural fluid plaque; bal; Cattle ; Chicken ; River trout ; Turkey ; Sheep ; Human urine	Microbial culture; Indirect association between microbiota composition and metabolites measured in host biospecimen; Metabolic reconstruction
Bacteria	Firmicutes	725	Human ; Human feces; Human stool; Human urine; Human sputum; Human pleural fluid plaque; Pig ; Human subgingival plaque; Human saliva; Human mucosa; Human supragingival plaque; Cattle ; Catfish	Microbial culture; Indirect association between microbiota composition and metabolites measured in host biospecimen; Metabolic reconstruction
Bacteria	Bacteroidetes	189	Human feces; Human appendix biopsy; Human ; Human stool; Human saliva; Human gastric fluid; Human urine; Human supragingival plaque; Human subgingival plaque	Microbial culture; Metabolic reconstruction
Bacteria	Verrucomicrobia	3	Human feces; Human stool; Human ; Human urine	Indirect association between microbiota composition and metabolites measured in host biospecimen; Metabolic reconstruction
Archaea	Euryarchaeota	9	Human feces; Human	Indirect association between microbiota composition and metabolites measured in host biospecimen; Metabolic reconstruction
Bacteria	Actinobacteria	245	Human feces; Human sputum; Human bronchial brush; Human nasopharyngeal swab; Human pleural fluid plaque; Human dental plaque; Human ; Human supragingival plaque; Human mucosa; Human subgingival plaque; Human saliva; Cattle	Metabolic reconstruction
Bacteria	Spirochaetes	10	Human feces; Human	Metabolic reconstruction
Archaea	Thaumarchaeota	2		Metabolic reconstruction
Bacteria	Fusobacteria	39	Human feces; Human	Metabolic reconstruction
Bacteria	Candidatus melainabacteria	2	Human feces	Metabolic reconstruction
Bacteria	Tenericutes	8	Human feces; Human	Metabolic reconstruction
Bacteria	Planctomycetes	3	Human feces	Metabolic reconstruction
Archaea	Crenarchaeota	1		Metabolic reconstruction
Bacteria	Thermotogae	4
Eukaryota/Fungi	Ascomycota	68	Human feces; Human saliva	Unknown
Bacteria	Aquificae	1
Archaea/Archaea	Euryarchaeota	26	Human feces; Human	Indirect association between microbiota composition and metabolites measured in host biospecimen; Metabolic reconstruction
Bacteria	Chlorobi	2
Eukaryota/Fungi	Basidiomycota	10
Bacteria	Chloroflexi	2
Bacteria	Deinococcus-thermus	3
Bacteria	Cyanobacteria	13
Bacteria	nah	1
Archaea/Archaea	Crenarchaeota	9		Metabolic reconstruction
Archaea/Archaea	Thaumarchaeota	1		Metabolic reconstruction

Exposure Sources

Source Type	Species	Data Source	Reference
Animal	Spirulina	FooDB	31437929
Animal	Lota lota	FooDB	31437929
Animal	Porphyra umbilicalis	FooDB	31437929
Animal	Chondrus crispus	FooDB	31437929
Animal	Laminaria	FooDB	31437929
Animal	Strombidae	FooDB	31437929
Animal	Haliotis	FooDB	31437929
Animal	Clupea harengus harengus	FooDB	31437929
Animal	Undaria pinnatifida	FooDB	31437929
Animal	Peprilus triacanthus	FooDB	31437929
Animal	Rhodophyta	FooDB	31437929
Animal	Myoxocephalus	FooDB	31437929
Animal	Eucheuma	FooDB	31437929
Animal	Saccharina japonica	FooDB	31437929
Plant	Theobroma cacao	FooDB	31437929
Plant	Rumex acetosa	FooDB	31437929
Plant	Perideridia oregana	FooDB	31437929
Plant	Pyrus pyrifolia	FooDB	31437929
Plant	Wasabia japonica	FooDB	31437929
Plant	Brassica oleracea var. capitata	FooDB	31437929
Plant	Vigna unguiculata ssp. cylindrica	FooDB	31437929
Plant	Vaccinium uliginosum	FooDB	31437929
Plant	Viburnum edule	FooDB	31437929
Plant	Theobroma grandiflorum	FooDB	31437929
Plant		FooDB	31437929
Plant	Citrus japonica	FooDB	31437929
Plant	Vaccinium myrtillus	FooDB	31437929
Plant	Solanum lycopersicum var. lycopersicum	FooDB	31437929
Plant	Flammulina velutipes	FooDB	31437929
Plant	Syzygium aromaticum	FooDB	31437929
Plant	Raphanus sativus var. sativus	FooDB	31437929
Plant	Ginkgo biloba	FooDB	31437929
Plant	Camellia sinensis	FooDB	31437929
Plant	Prunus persica var. persica	FooDB	31437929
Plant	Phaseolus vulgaris	FooDB	31437929
Plant	Pouteria sapota	FooDB	31437929
Plant	Vicia faba	FooDB	31437929
Plant	Prunus avium	FooDB	31437929
Plant	Daucus carota ssp. sativus	FooDB	31437929
Plant	Raphanus sativus var. niger	FooDB	31437929
Plant	Piper nigrum	FooDB	31437929
Plant	Photinia melanocarpa	FooDB	31437929
Plant	Rubus ursinus x idaeus	FooDB	31437929
Plant	Dioscorea	FooDB	31437929
Plant	Momordica charantia	FooDB	31437929
Plant	Origanum vulgare	FooDB	31437929
Plant	Cirsium	FooDB	31437929
Plant	Dysphania ambrosioides	FooDB	31437929
Plant	Opuntia	FooDB	31437929
Plant	Castanea	FooDB	31437929
Plant	Vitis vinifera	FooDB	31437929
Plant	Salix pulchra	FooDB	31437929
Plant	Capsicum annuum	FooDB	31437929
Plant	Pleurotus ostreatus	FooDB	31437929
Plant	Nuphar lutea	FooDB	31437929
Plant	Vaccinium ovatum	FooDB	31437929
Plant	Colocasia esculenta	FooDB	31437929
Plant	Syzygium jambos	FooDB	31437929
Plant	Thymus pulegioides	FooDB	31437929
Plant	Anthriscus cerefolium	FooDB	31437929
Plant	Pachyrhizus erosus	FooDB	31437929
Plant	Mespilus germanica	FooDB	31437929
Plant	Lupinus albus	FooDB	31437929
Plant	Citrus maxima	FooDB	31437929
Plant	Brassica rapa var. perviridis	FooDB	31437929
Plant	Cichorium endivia	FooDB	31437929
Plant	Myristica fragrans	FooDB	31437929
Plant	Elaeis	FooDB	31437929
Plant	Cinnamomum	FooDB	31437929
Plant	Solanum melongena	FooDB	31437929
Plant	Feijoa sellowiana	FooDB	31437929
Plant	Salvia elegans	FooDB	31437929
Plant	Mentha	FooDB	31437929
Plant	Ribes uva-crispa	FooDB	31437929
Plant	Mentha aquatica	FooDB	31437929
Plant	Fagus	FooDB	31437929
Plant	Brassica oleracea var. italica	FooDB	31437929
Plant	Phaseolus coccineus	FooDB	31437929
Plant	Crocus sativus	FooDB	31437929
Plant	Vaccinium	FooDB	31437929
Plant	Cydonia oblonga	FooDB	31437929
Plant	Lablab purpureus	FooDB	31437929
Plant	Salvia officinalis	FooDB	31437929
Plant	Rheum rhabarbarum	FooDB	31437929
Plant	Castanea sativa	FooDB	31437929
Plant	Opuntia cochenillifera	FooDB	31437929
Plant	Apium graveolens	FooDB	31437929
Plant	Empetrum nigrum	FooDB	31437929
Plant	Myrica rubra	FooDB	31437929
Plant	Annona muricata	FooDB	31437929
Plant	Sagittaria latifolia	FooDB	31437929
Plant	Tilia tomentosa	FooDB	31437929
Plant	Cucurbita	FooDB	31437929
Plant	Vaccinium angustifolium x vaccinium corymbosum	FooDB	31437929
Plant	Syzygium cumini	FooDB	31437929
Plant	Typha angustifolia	FooDB	31437929
Plant	Tamarindus indica	FooDB	31437929
Plant	Cocos nucifera	FooDB	31437929
Plant	Valerianella locusta	FooDB	31437929
Plant	Cucurbita pepo var. cylindrica	FooDB	31437929
Plant	Angelica keiskei	FooDB	31437929
Plant	Sambucus	FooDB	31437929
Plant	Hyssopus officinalis	FooDB	31437929
Plant	Sisymbrium	FooDB	31437929
Plant	Pinus	FooDB	31437929
Plant	Olea europaea	FooDB	31437929
Plant	Vanilla	FooDB	31437929
Plant	Borago officinalis	FooDB	31437929
Plant	Psidium guajava	FooDB	31437929
Plant	Vaccinium vitis-idaea	FooDB	31437929
Plant	Carya	FooDB	31437929
Plant	Rubus spectabilis	FooDB	31437929
Plant	Scorzonera hispanica	FooDB	31437929
Plant	Vigna unguiculata ssp. sesquipedalis	FooDB	31437929
Plant	Physalis philadelphica var. immaculata	FooDB	31437929
Plant	Ipomoea aquatica	FooDB	31437929
Plant	Manihot esculenta	FooDB	31437929
Plant	Daucus carota	FooDB	31437929
Plant	Raphanus sativus	FooDB	31437929
Plant	Solanum tuberosum	FooDB	31437929
Plant	Cuminum cyminum	FooDB	31437929
Plant	Beta vulgaris ssp. cicla	FooDB	31437929
Plant	Prunus dulcis	FooDB	31437929
Plant	Cantharellus cibarius	FooDB	31437929
Plant	Vigna radiata	FooDB	31437929
Plant	Brassica oleracea l. var. capitata l. f. alba dc.	FooDB	31437929
Plant	Allium sativum	FooDB	31437929
Plant	Opuntia macrorhiza	FooDB	31437929
Plant	Allium cepa	FooDB	31437929
Plant	Morus nigra	FooDB	31437929
Plant	Musa x paradisiaca	FooDB	31437929
Plant	Sinapis alba	FooDB	31437929
Plant	Brassica ruvo	FooDB	31437929
Plant	Pinus edulis	FooDB	31437929
Plant	Fragaria x ananassa	FooDB	31437929
Plant	Illicium verum	FooDB	31437929
Plant	Apium graveolens var. secalinum	FooDB	31437929
Plant		FooDB	31437929
Plant	Arachis hypogaea	FooDB	31437929
Plant	Passiflora edulis	FooDB	31437929
Plant	Juglans ailanthifolia	FooDB	31437929
Plant	Pyrus communis	FooDB	31437929
Plant	Rubus idaeus	FooDB	31437929
Plant	Manilkara zapota	FooDB	31437929
Plant	Abelmoschus esculentus	FooDB	31437929
Plant	Moringa oleifera	FooDB	31437929
Plant	Auricularia auricula-judae	FooDB	31437929
Plant	Polygonum alpinum	FooDB	31437929
Plant	Chamaemelum nobile	FooDB	31437929
Plant	Melissa officinalis	FooDB	31437929
Plant	Vigna angularis	FooDB	31437929
Plant	Solanum lycopersicum	FooDB	31437929
Plant	Hippophae rhamnoides	FooDB	31437929
Plant	Malus	FooDB	31437929
Plant	Sambucus nigra	FooDB	31437929
Plant	Corylus	FooDB	31437929
Plant	Juglans	FooDB	31437929
Plant	Cucurbita pepo var. clypeata	FooDB	31437929
Plant	Auricularia polytricha	FooDB	31437929
Plant	Rubus arcticus	FooDB	31437929
Plant	Mentha spicata	FooDB	31437929
Plant	Mangifera indica	FooDB	31437929
Plant	Pediomelum esculentum	FooDB	31437929
Plant	Laurus nobilis	FooDB	31437929
Plant	Attalea speciosa	FooDB	31437929
Plant	Helianthus annuus	FooDB	31437929
Plant	Rumex articus	FooDB	31437929
Plant	Ribes aureum var. villosum	FooDB	31437929
Plant	Petroselinum crispum	FooDB	31437929
Plant	Ribes nigrum	FooDB	31437929
Plant	Chrysanthemum coronarium	FooDB	31437929
Plant	Eleocharis dulcis	FooDB	31437929
Plant	Vaccinium corymbosum	FooDB	31437929
Plant	Zingiber officinale	FooDB	31437929
Plant	Brassica juncea	FooDB	31437929
Plant	Camellia oleifera	FooDB	31437929
Plant	Pisum sativum	FooDB	31437929
Plant	Eruca vesicaria ssp. sativa	FooDB	31437929
Plant	Pimenta dioica	FooDB	31437929
Plant	Thymus vulgaris	FooDB	31437929
Plant	Actinidia chinensis	FooDB	31437929
Plant	Metroxylon sagu	FooDB	31437929
Plant	Canarium ovatum	FooDB	31437929
Plant	Hibiscus sabdariffa	FooDB	31437929
Plant	Medicago sativa	FooDB	31437929
Plant	Spinacia oleracea	FooDB	31437929
Plant	Vitis rotundifolia	FooDB	31437929
Plant	Agaricus bisporus	FooDB	31437929
Plant	Origanum majorana	FooDB	31437929
Plant	Morus	FooDB	31437929
Plant	Carica papaya	FooDB	31437929
Plant	Benincasa hispida	FooDB	31437929
Plant	Cajanus cajan	FooDB	31437929
Plant	Vitis labrusca	FooDB	31437929
Plant	Vigna mungo	FooDB	31437929
Plant	Armoracia rusticana	FooDB	31437929
Plant	Myrica	FooDB	31437929
Plant	Juglans cinerea	FooDB	31437929
Plant	Cucurbita pepo var. cylindrica	FooDB	31437929
Plant	Cyathea	FooDB	31437929
Plant	Psidium cattleianum	FooDB	31437929
Plant	Arctium lappa	FooDB	31437929
Plant	Brassica oleracea var. gongylodes	FooDB	31437929
Plant	Prunus persica	FooDB	31437929
Plant	Vigna unguiculata	FooDB	31437929
Plant	Foeniculum vulgare	FooDB	31437929
Plant	Artocarpus altilis	FooDB	31437929
Plant	Cynara scolymus	FooDB	31437929
Plant	Castanea mollissima	FooDB	31437929
Plant	Vaccinium macrocarpon	FooDB	31437929
Plant	Brassica oleracea var. gemmifera	FooDB	31437929
Plant	Brosimum alicastrum	FooDB	31437929
Plant	Vaccinium angustifolium	FooDB	31437929
Plant	Artemisia vulgaris	FooDB	31437929
Plant	Cucumis metuliferus	FooDB	31437929
Plant	Nephelium lappaceum	FooDB	31437929
Plant	Phoenix dactylifera	FooDB	31437929
Plant	Lentinus edodes	FooDB	31437929
Plant	Citrus x paradisi	FooDB	31437929
Plant	Rosmarinus officinalis	FooDB	31437929
Plant	Phytolacca americana	FooDB	31437929
Plant	Tetragonia tetragonioides	FooDB	31437929
Plant	Prunus cerasus	FooDB	31437929
Plant	Thelesperma	FooDB	31437929
Plant	Vaccinium elliottii	FooDB	31437929
Plant	Lepidium sativum	FooDB	31437929
Plant	Castanea crenata	FooDB	31437929
Plant	Helianthus tuberosus	FooDB	31437929
Plant	Grifola frondosa	FooDB	31437929
Plant	Corylus avellana	FooDB	31437929
Plant	Levisticum officinale	FooDB	31437929
Plant	Quercus	FooDB	31437929
Plant	Chamerion angustifolium	FooDB	31437929
Plant	Ficus carica	FooDB	31437929
Plant	Beta vulgaris var. rubra	FooDB	31437929
Plant		FooDB	31437929
Plant	Litchi chinensis	FooDB	31437929
Plant	Malpighia emarginata	FooDB	31437929
Plant	Ziziphus zizyphus	FooDB	31437929
Plant	Physalis	FooDB	31437929
Plant	Pangium edule	FooDB	31437929
Plant	Matricaria recutita	FooDB	31437929
Plant	Dimocarpus longan	FooDB	31437929
Plant	Hedysarum alpinum	FooDB	31437929
Plant	Trigonella foenum-graecum	FooDB	31437929
Plant	Juglans regia	FooDB	31437929
Plant	Cynara cardunculus	FooDB	31437929
Plant	Apium graveolens var. dulce	FooDB	31437929
Plant	Brassica oleracea var. sabauda	FooDB	31437929
Plant	Capsicum baccatum var. baccatum	FooDB	31437929
Plant	Brassica napus	FooDB	31437929
Plant	Salvia hispanica	FooDB	31437929
Plant	Asparagus officinalis	FooDB	31437929
Plant	Agave	FooDB	31437929
Plant	Artemisia dracunculus	FooDB	31437929
Plant	Capsicum pubescens	FooDB	31437929
Plant	Vigna aconitifolia	FooDB	31437929
Plant	Pimpinella anisum	FooDB	31437929
Plant	Vitis aestivalis	FooDB	31437929
Plant	Xanthosoma sagittifolium	FooDB	31437929
Plant	Eugenia javanica	FooDB	31437929
Plant	Citrus aurantiifolia	FooDB	31437929
Plant	Brassica oleracea var. viridis	FooDB	31437929
Plant	Vitellaria paradoxa	FooDB	31437929
Plant	Allium	FooDB	31437929
Plant	Vaccinium stamineum	FooDB	31437929
Plant	Crateva religiosa	FooDB	31437929
Plant	Lactuca sativa	FooDB	31437929
Plant	Basella alba	FooDB	31437929
Plant	Brassica alboglabra	FooDB	31437929
Plant	Eragrostis tef	FooDB	31437929
Plant	Mammea americana	FooDB	31437929
Plant	Mentha arvensis	FooDB	31437929
Plant	Diospyros	FooDB	31437929
Plant		FooDB	31437929
Plant	Byrsonima crassifolia	FooDB	31437929
Plant	Amaranthus	FooDB	31437929
Plant	Pistacia vera	FooDB	31437929
Plant	Annona squamosa	FooDB	31437929
Plant	Beta vulgaris	FooDB	31437929
Plant	Gossypium	FooDB	31437929
Plant	Grataegosorbus mitschurinii	FooDB	31437929
Plant	Solanum lycopersicum var. cerasiforme	FooDB	31437929
Plant	Punica granatum	FooDB	31437929
Plant	Vitis	FooDB	31437929
Plant	Citrus latifolia	FooDB	31437929
Plant	Origanum x majoricum	FooDB	31437929
Plant	Carya illinoinensis	FooDB	31437929
Plant		FooDB	31437929
Plant	Diospyros virginiana	FooDB	31437929
Plant	Psophocarpus tetragonolobus	FooDB	31437929
Plant	Brassica rapa var. chinensis	FooDB	31437929
Plant	Portulaca oleracea	FooDB	31437929
Plant	Malus pumila	FooDB	31437929
Plant	Ribes x nidigrolaria	FooDB	31437929
Plant	Rubus chamaemorus	FooDB	31437929
Plant	Rumex	FooDB	31437929
Plant	Cucumis sativus	FooDB	31437929
Plant	Cinnamomum aromaticum	FooDB	31437929
Plant	Eugenia uniflora	FooDB	31437929
Plant	Ribes rubrum	FooDB	31437929
Plant	Ipomoea batatas	FooDB	31437929
Plant	Allium ampeloprasum	FooDB	31437929
Plant	Chenopodium album	FooDB	31437929
Plant	Citrullus lanatus var. fistulosus	FooDB	31437929
Plant	Allium tuberosum	FooDB	31437929
Plant	Cucurbita maxima	FooDB	31437929
Plant		FooDB	31437929
Plant	Lathyrus sativus	FooDB	31437929
Plant	Sechium edule	FooDB	31437929
Plant	Tragopogon porrifolius	FooDB	31437929
Plant	Brassica oleracea	FooDB	31437929
Plant	Pastinaca sativa	FooDB	31437929
Plant	Rubus x loganobaccus	FooDB	31437929
Plant	Sesbania bispinosa	FooDB	31437929
Plant	Amelanchier alnifolia	FooDB	31437929
Plant	Gaylussacia baccata	FooDB	31437929
Plant	Garcinia mangostana	FooDB	31437929
Plant	Annona reticulata	FooDB	31437929
Plant	Allium ascalonicum	FooDB	31437929
Plant	Lactuca sativa l. var. longifolia	FooDB	31437929
Plant	Curcuma longa	FooDB	31437929
Plant	Taraxacum officinale	FooDB	31437929
Plant	Elettaria cardamomum	FooDB	31437929
Plant	Dioscorea pentaphylla	FooDB	31437929
Plant	Petasites japonicus	FooDB	31437929
Plant	Vaccinium myrtilloides	FooDB	31437929
Plant	Matteuccia struthiopteris	FooDB	31437929
Plant	Persea americana	FooDB	31437929
Plant	Tilia	FooDB	31437929
Plant	Prunus tomentosa	FooDB	31437929
Plant	Brassica oleracea var. conica	FooDB	31437929
Plant	Corchorus olitorius	FooDB	31437929
Plant	Brassica oleracea var. botrytis	FooDB	31437929
Plant	Cichorium intybus	FooDB	31437929
Plant	Cinnamomum verum	FooDB	31437929
Plant	Chenopodium quinoa	FooDB	31437929
Plant	Lippia graveolens	FooDB	31437929
Plant	Maranta arundinacea	FooDB	31437929
Plant	Ananas comosus	FooDB	31437929
Plant	Cucumis melo	FooDB	31437929
Plant	Juglans nigra	FooDB	31437929
Plant	Mentha x piperita	FooDB	31437929
Plant	Nelumbo	FooDB	31437929
Plant	Cucurbita moschata	FooDB	31437929
Plant	Vaccinium deliciosum	FooDB	31437929
Plant	Macadamia	FooDB	31437929
Plant	Rosa	FooDB	31437929
Plant	Apium graveolens var. rapaceum	FooDB	31437929
Plant	Papaver	FooDB	31437929
Plant	Capsicum annuum var. annuum	FooDB	31437929
Plant	Ocimum basilicum	FooDB	31437929
Plant	Macadamia tetraphylla	FooDB	31437929
Plant	Brassica rapa var. pekinensis	FooDB	31437929
Plant	Citrus limon	FooDB	31437929
Plant	Annona cherimola	FooDB	31437929
Plant	Capparis spinosa	FooDB	31437929
Plant	Brassica rapa	FooDB	31437929
Plant	Prunus virginiana	FooDB	31437929
Plant	Prunus	FooDB	31437929
Plant	Sorbus aucuparia	FooDB	31437929
Plant	Sesamum orientale	FooDB	31437929
Plant	Carissa macrocarpa	FooDB	31437929
Plant	Brassica oleracea var. costata	FooDB	31437929
Plant	Glycine max	FooDB	31437929
Plant	Panax	FooDB	31437929
Plant	Artocarpus heterophyllus	FooDB	31437929
Plant	Satureja hortensis	FooDB	31437929
Plant	Phaseolus lunatus	FooDB	31437929
Plant	Vigna umbellata	FooDB	31437929
Plant	Lagenaria siceraria	FooDB	31437929
Plant	Lens culinaris	FooDB	31437929
Plant	Rubus occidentalis	FooDB	31437929
Plant	Allium fistulosum	FooDB	31437929
Plant	Capsicum	FooDB	31437929
Plant	Musa acuminata	FooDB	31437929
Plant	Lupinus	FooDB	31437929
Plant	Citrus sinensis	FooDB	31437929
Plant	Tilia cordata	FooDB	31437929
Plant	Vigna unguiculata ssp. unguiculata	FooDB	31437929
Plant	Phyllostachys edulis	FooDB	31437929
Plant	Linum usitatissimum	FooDB	31437929
Plant	Ribes glandulosum	FooDB	31437929
Plant	Luffa aegyptiaca	FooDB	31437929
Plant	Averrhoa carambola	FooDB	31437929
Plant	Carum carvi	FooDB	31437929
Plant	Nelumbo nucifera	FooDB	31437929
Plant	Cymbopogon citratus	FooDB	31437929
Plant	Allium schoenoprasum	FooDB	31437929
Plant	Citrullus lanatus	FooDB	31437929
Plant	Vaccinium alaskaense	FooDB	31437929
Plant	Verbena officinalis	FooDB	31437929
Plant	Prunus domestica	FooDB	31437929
Plant	Prunus armeniaca	FooDB	31437929
Plant	Durio zibethinus	FooDB	31437929
Plant	Vaccinium oxycoccos	FooDB	31437929
Plant	Bertholletia excelsa	FooDB	31437929
Plant	Citrus reticulata	FooDB	31437929
Plant	Ceratonia siliqua	FooDB	31437929
Plant	Aloysia triphylla	FooDB	31437929
Plant	Vaccinium parvifolium	FooDB	31437929
Plant	Brassica rapa var. rapa	FooDB	31437929
Plant	Capsicum chinense	FooDB	31437929
Plant	Coriandrum sativum	FooDB	31437929
Plant	Anethum graveolens	FooDB	31437929
Plant	Carthamus tinctorius	FooDB	31437929
Plant	Cicer arietinum	FooDB	31437929
Plant	Oenothera biennis	FooDB	31437929
Plant	Prunus persica var. nucipersica	FooDB	31437929
Plant	Anacardium occidentale	FooDB	31437929
Plant	Vaccinium reticulatum	FooDB	31437929
Plant	Satureja montana	FooDB	31437929
Plant	Vaccinium arboreum	FooDB	31437929
Plant	Brassica napus var. pabularia	FooDB	31437929
Plant	Solanum quitoense	FooDB	31437929
Plant	Diospyros kaki	FooDB	31437929
Plant	Origanum onites	FooDB	31437929
Plant	Eriobotrya japonica	FooDB	31437929
Plant	Virola surinamensis	FooDB	31437929

Host Biospecimen and Location

Host and Biospecimen	Status	Mean	Std	Min	Max	Units	Age	Sex	Health Condition	Data Source	Reference
Human Feces	Detected but not Quantified									HMDB
Human Urine	Detected and Quantified	12.34	5.07			umol/mmol creatinine	Adult (>18 years old)	Both	Alzheimer's disease	HMDB	17031479
Human Saliva	Detected and Quantified	28.26	9.78			uM	Adult (>18 years old)	Male	Alzheimer's disease	HMDB	23857558
Human Blood	Detected and Quantified	68.35	22.43			uM	Adult (>18 years old)	Both	Alzheimer's disease	HMDB	17031479
Human Blood	Detected and Quantified	33	15			uM	Children (1-13 years old)	Both	Cutis laxa, autosomal recessive, type IIIA	HMDB	11092761
Human Urine	Detected and Quantified	332.7				umol/mmol creatinine	Adult (>18 years old)	Both	Cystinuria	HMDB	14586528
Human Urine	Detected and Quantified			19	988.300	umol/mmol creatinine	Adult (>18 years old)	Both	Cystinuria	HMDB	14586528
Human Blood	Detected and Quantified	36.1	11.9			uM	Adult (>18 years old)	Female	Early preeclampsia	HMDB	22494326
Human Saliva	Detected and Quantified	24.28	12.91			uM	Adult (>18 years old)	Male	Frontotemporal lobe dementia	HMDB	23857558
Human Blood	Detected and Quantified	77				uM	Infant (0-1 year old)	Male	Fumaric aciduria	HMDB	20549362
Human Urine	Detected and Quantified			92.570	123.800	umol/mmol creatinine	Infant (0-1 year old)	Not Specified	Fumaric aciduria	HMDB	20549362
Human Urine	Detected and Quantified			4.106	13.859	umol/mmol creatinine	Adult (>18 years old)	Both	Hyperdibasic aminoaciduria I	HMDB	5727921
Human Urine	Detected and Quantified			4.106	35.759	umol/mmol creatinine	Adult (>18 years old)	Both	Dibasic Amino Aciduria I	HMDB	5727921
Human Urine	Detected and Quantified			4.363	53.381	umol/mmol creatinine	Children (1-13 years old)	Female	Dibasic Amino Aciduria I	HMDB	5727921
Human Urine	Detected and Quantified			8.897	14.0297	umol/mmol creatinine	Children (1 - 13 years old)	Female	Hyperdibasic aminoaciduria I	HMDB	5727921
Human Urine	Detected and Quantified			26	63	umol/mmol creatinine	Children (1-13 years old)	Both	Hyperlysinemia I, familial	HMDB	23890588
Human Urine	Detected and Quantified			190	9883	umol/mmol creatinine	Adult (>18 years old)	Both	Hyperlysinuria	HMDB	14586528
Human Blood	Detected and Quantified	1066		798	1321	uM	Adult (>18 years old)	Both	Hyperornithinemia with gyrate atrophy	HMDB	4122112
Human Cerebrospinal fluid (csf)	Detected and Quantified	288		240	314	uM	Adult (>18 years old)	Both	Hyperornithinemia with gyrate atrophy	HMDB	4122112
Human Blood	Detected and Quantified	36.8	17.4			uM	Adult (>18 years old)	Female	Late-onset preeclampsia	HMDB	23159745
Human Cerebrospinal fluid (csf)	Detected and Quantified	6.9	3.6			uM	Children (1-13 years old)	Not Specified	Leukemia	HMDB	15911239
Human Cerebrospinal fluid (csf)	Detected and Quantified	7.6	3.1			uM	Children (1-13 years old)	Not Specified	Leukemia	HMDB	15911239
Human Saliva	Detected and Quantified	16.85	10.62			uM	Adult (>18 years old)	Both	Lewy body disease	HMDB	23857558
Human Blood	Detected and Quantified			4	22	uM	Children (1 - 13 years old)	Both	Lysinuric protein intolerance	HMDB	28028301
Human Urine	Detected and Quantified			16.110	51	umol/mmol creatinine	Children (1 - 13 years old)	Both	Lysinuric protein intolerance	HMDB	28028301
Human Blood	Detected and Quantified	32.3		22.4	53.9	uM	Adult (>18 years old)	Both	Lysinuric protein intolerance	HMDB	27506743
Human Blood	Detected and Quantified	191				uM	Newborn (0-30 days old)	Male	Narp Syndrome	HMDB	9950309
Human Blood	Detected and Quantified			20	153	uM	Infant (0-1 year old)	Both	Narp Syndrome	HMDB	9950309
Human Blood	Detected and Quantified			23	54	uM	Children (1-13 years old)	Male	Narp Syndrome	HMDB	9950309
Human Blood	Detected and Quantified			32	167	uM	Newborn (0-30 days old)	Male	N-Acetylglutamate synthetase deficiency	HMDB	7623444
Human Blood	Detected and Quantified			42	290	uM	Children (1-13 years old)	Male	N-acetylglutamate synthetase deficiency	HMDB	2044610
Human Blood	Detected and Quantified			53	152	uM	Infant (0-1 year old)	Male	N-Acetylglutamate synthetase deficiency	HMDB	7623444
Human Blood	Detected and Quantified	41.0	16.0			uM	Adult (>18 years old)	Both	Ornithine transcarbamylase (OTC) deficiency	HMDB	16635166
Human Blood	Detected and Quantified	19				uM	Infant (0-1 year old)	Female	Pearson Syndrome	HMDB	25691415
Human Blood	Detected and Quantified	33 +/- 29		9	98	uM	Children (1-13 years old)	Female	Pearson Syndrome	HMDB	25691415
Human Blood	Detected and Quantified	22.37	8.47			uM	Adult (>18 years old)	Female	Pregnancy	HMDB	24704061
Human Blood	Detected and Quantified	26.0	10.8			uM	Adult (>18 years old)	Female	Pregnancy	HMDB	23313728
Human Blood	Detected and Quantified	28.20	10.61			uM	Adult (>18 years old)	Female	Pregnancy	HMDB	23535240
Human Blood	Detected and Quantified	38.2	15.7			uM	Adult (>18 years old)	Female	Pregnancy	HMDB	22494326
Human Blood	Detected and Quantified	42.3	22.5			uM	Adult (>18 years old)	Female	Pregnancy	HMDB	23159745
Human Blood	Detected and Quantified	37.8	12.0			uM	Children (1-13 years old)	Both	Uremia	HMDB	11865086
Human Urine	Detected and Quantified	0.9				umol/mmol creatinine	Adult (>18 years old)	Both	Normal	HMDB	21388201
Human Urine	Detected and Quantified	0.98				umol/mmol creatinine	Adult (>18 years old)	Both	Normal	HMDB	19309105
Human Sweat	Detected and Quantified	< 10				uM	Adult (60 years old)	Male	Normal	HMDB	22194922
Human Sweat	Detected and Quantified	< 10				uM	Adult (40 years old)	Male	Normal	HMDB	22194922
Human Saliva	Detected and Quantified	>10				uM	Adult (>18 years old)	Both	Normal	HMDB	12097436
Human Urine	Detected and Quantified			0	17	umol/mmol creatinine	Infant (0-1 year old)	Both	Normal	HMDB	30830347
Human Urine	Detected and Quantified			0	5	umol/mmol creatinine	Children (1-13 years old)	Both	Normal	HMDB	23890588
Human Urine	Detected and Quantified			0	7	umol/mmol creatinine	Children (1 - 13 years old)	Both	Normal	HMDB	28028301
Human Urine	Detected and Quantified			0.0024	0.0111	umol/mmol creatinine	Adult (>18 years old)	Both	Normal	HMDB	21389975
Human Urine	Detected and Quantified			1.2	2.3	umol/mmol creatinine	Adult (>18 years old)	Male	Normal	HMDB	27012787
Human Urine	Detected and Quantified			1.44	24.36	umol/mmol creatinine	Newborn (0-30 days old)	Both	Normal	HMDB	32340350
Human Urine	Detected and Quantified			1.5	2.6	umol/mmol creatinine	Adult (>18 years old)	Female	Normal	HMDB	27012787
Human Urine	Detected and Quantified			1.696	46.468	umol/mmol creatinine	Infant (0-1 year old)	Not Specified	Normal	HMDB	20549362
Human Urine	Detected and Quantified	1.882	1.968			umol/mmol creatinine	Adult (>18 years old)	Not Specified	Normal	HMDB	5727921
Human Urine	Detected and Quantified	1.882	1.968			umol/mmol creatinine	Not Specified	Not Specified	Normal	HMDB	5727921
Human Blood	Detected and Quantified			10	110	uM	Children (1-13 years old)	Both	Normal	HMDB	2044610
Human Blood	Detected and Quantified	109.0	32.0			uM	Adult (>18 years old)	Both	Normal	HMDB	16635166
Human Saliva	Detected and Quantified	11.5	6.3			uM	Adult (>18 years old)	Male	Normal	HMDB	21164041
Human Blood	Detected and Quantified	124		90.4	189	uM	Infant (0-1 year old)		Normal	HMDB	25754623
Human Saliva	Detected and Quantified	13.4	7.5			uM	Adult (>18 years old)	Male	Normal	HMDB	21164041
Human Saliva	Detected and Quantified	14.0	10.6			uM	Adult (>18 years old)	Male	Normal	HMDB	21164041
Human Saliva	Detected and Quantified	18.5	8.6			uM	Adult (>18 years old)	Male	Normal	HMDB	21164041
Human Blood	Detected and Quantified	185		144	222	uM	Newborn (0-30 days old)		Normal	HMDB	25754623
Human Urine	Detected and Quantified	2.0		0.90	2.94	umol/mmol creatinine	Adult (>18 years old)	Male	Normal	HMDB	5472370
Human Urine	Detected and Quantified	2.19	3.21			umol/mmol creatinine	Infant (0-1 year old)	Both	Normal	HMDB	2026685
Human Cerebrospinal fluid (csf)	Detected and Quantified			2.4	9.0	uM	Children (1-13 years old)	Both	Normal	HMDB	23890588
Human Feces	Detected and Quantified	20	20			nmol/g wet feces	Adult (>18 years old)	Both	Normal	HMDB	27624970
Human Blood	Detected and Quantified			20	135	uM	Children (1-13 years old)	Not Specified	Normal	HMDB	25691415
Human Blood	Detected and Quantified			20	135	uM	Infant (0-1 year old)	Not Specified	Normal	HMDB	25691415
Human Blood	Detected and Quantified			30	64	uM	Adult (>18 years old)	Not Specified	Normal	HMDB	4122112
Human Blood	Detected and Quantified			31	179	uM	Infant (0-1 year old)	Not Specified	Normal	HMDB	9950309
Human Urine	Detected and Quantified	31.66	29.40			umol/mmol creatinine	Newborn (0-30 days old)	Both	Normal	HMDB	19468821
Human Blood	Detected and Quantified	34.3	13.0			uM	Children (1-13 years old)	Both	Normal	HMDB	11865086
Human Saliva	Detected and Quantified	38.16	52.83			uM	Adult (>18 years old)	Female	Normal	HMDB	23857558
Human Urine	Detected and Quantified	4.11	1.37			umol/mmol creatinine	Adult (>18 years old)	Both	Normal	HMDB	15992788
Human Urine	Detected and Quantified	4.4		1.2	22.1	umol/mmol creatinine	Adult (>18 years old)	Both	Normal	HMDB	24023812
Human Cerebrospinal fluid (csf)	Detected and Quantified	4.5	2.2			uM	Adult (>18 years old)	Not Specified	Normal	HMDB	22546835
Human Urine	Detected and Quantified	4.72		2.03	10.45	umol/mmol creatinine	Newborn (0-30 days old)	Female	Normal	HMDB	32340350
Human Cerebrospinal fluid (csf)	Detected and Quantified	4.87		3.48	6.26	uM	Adult (>18 years old)	Both	Normal	HMDB	12834252
Human Cerebrospinal fluid (csf)	Detected and Quantified	4.9	1.6			uM	Adult (>18 years old)	Not Specified	Normal	HMDB	6198473
Human Blood	Detected and Quantified			48	211	uM	Infant (0-1 year old)	Not Specified	Normal	HMDB	20549362
Human Urine	Detected and Quantified	5.3		2.0	8.8	umol/mmol creatinine	Adult (>18 years old)	Both	Normal	HMDB	24023812
Human Urine	Detected and Quantified	5.79		1.28	25.46	umol/mmol creatinine	Newborn (0-30 days old)	Male	Normal	HMDB	32340350
Human Urine	Detected and Quantified	54.27	47.49			umol/mmol creatinine	Newborn (0-30 days old)	Both	Normal	HMDB	19468821
Human Blood	Detected and Quantified	55.0		39.0	71.0	uM	Adult (>18 years old)	Both	Normal	HMDB	12297216
Human Cerebrospinal fluid (csf)	Detected and Quantified	6.0	1.5			uM	Adult (>18 years old)	Not Specified	Normal	HMDB	6198473
Human Blood	Detected and Quantified	66.9	15.3			uM	Adult (>18 years old)	Both	Normal	HMDB	21359215
Human Blood	Detected and Quantified	69.0	18.0			uM	Adult (>18 years old)	Both	Normal	HMDB	28278231
Human Blood	Detected and Quantified	69.1		56.1	90.2	uM	Children (1-13 uears old)	Both	Normal	HMDB	27294788
Human Blood	Detected and Quantified	72	25			uM	Children (1-13 years old)	Not Specified	Normal	HMDB	11092761
Human Blood	Detected and Quantified	74.3		52.7	81.3	uM	Adult (>18 years old)	Both	Normal	HMDB	27506743
Human Urine	Detected and Quantified	76.88	79.14			umol/mmol creatinine	Newborn (0-30 days old)	Both	Normal	HMDB	19468821
Human Blood	Detected and Quantified	77	41			uM	Infant (0-1 year old)	Both	Normal	HMDB	7623444
Human Blood	Detected and Quantified			8	156	uM	Children (1 - 13 years old)	Both	Normal	HMDB	28028301
Human Cerebrospinal fluid (csf)	Detected and Quantified	8.1		5	7-10-9	uM	Adult (>18 years old)	Not Specified	Normal	HMDB	4122112
Human Cerebrospinal fluid (csf)	Detected and Quantified	8.3	4.7			uM	Adult (>18 years old)	Not Specified	Normal	HMDB	15911239
Human Blood	Detected and Quantified	93.8	41.3			uM	Adult (>18 years old)	Both	Normal	HMDB	21359215
Human Urine	Detected and Quantified	11.611	17.647			umol/mmol creatinine	Children (1 - 13 years old)	Not Specified	Eosinophilic esophagitis	HMDB	Analysis of 30 normal pediatric urine samples via NMR spectroscopy (unpublished work)
Human Urine	Detected and Quantified	3.371	6.3791			umol/mmol creatinine	Children (1 - 13 years old)	Not Specified	Eosinophilic esophagitis	HMDB	Analysis of 30 normal pediatric urine samples via NMR spectroscopy (unpublished work)
Human Blood	Detected and Quantified	21		2	83	uM	Adult (>18 years old)	Not Specified	Lysinuric protein intolerance	HMDB	Lysinuric Protein Intolerance and Other Cationic Aminoacidurias. The metabolic and molecular bases of inherited disease, 7/e; Editors: C.R.Scriver, A.L.Beaudet, W.S.Sly, D.Valle; McGraw-Hill Inc. (1995) DOI: 10.1036/ommbid.225
Human Blood	Detected and Quantified	55.2	15.4			uM	Children (1-13 years old)	Both	Obesity	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children
Human Blood	Detected and Quantified	60.2	18.2			uM	Children (1-13 years old)	Both	Obesity	HMDB	Metabolomics reveals determinants of weight loss during lifestyle intervention in obese children
Human Urine	Detected and Quantified	350.0		200.0	500.0	umol/mmol creatinine	Children (1-13 years old)	Both	Cystinuria	HMDB	MetaGene: Metabolic & Genetic Information Center (MIC: http://www.metagene.de)
Human Urine	Detected and Quantified	5.0		2.0	8.0	umol/mmol creatinine	Adult (>18 years old)	Both	Cystinuria	HMDB	MetaGene: Metabolic & Genetic Information Center (MIC: http://www.metagene.de)
Human Urine	Detected and Quantified	12.584	12.605			umol/mmol creatinine	Children (1 - 13 years old)	Not Specified	Normal	HMDB	Analysis of 30 normal pediatric urine samples via NMR spectroscopy (unpublished work)
Human Urine	Detected and Quantified	2.471	0.8319			umol/mmol creatinine	Children (1 - 13 years old)	Not Specified	Normal	HMDB	Analysis of 30 normal pediatric urine samples via NMR spectroscopy (unpublished work)
Human Urine	Detected and Quantified			0	10.40	umol/mmol creatinine	Infant (6 months - <1 year old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Urine	Detected and Quantified			0	10.40	umol/mmol creatinine	Children (1 - 2 years old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Urine	Detected and Quantified			0	13.00	umol/mmol creatinine	Infant (1 - 6 months old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Urine	Detected and Quantified			0	24.08	umol/mmol creatinine	Newborn (0-30 days old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Urine	Detected and Quantified			0	6.56	umol/mmol creatinine	Adolescent (13 - 21 years old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Urine	Detected and Quantified			0	6.56	umol/mmol creatinine	Adult (>21 years old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Urine	Detected and Quantified			0	9.04	umol/mmol creatinine	Children (2 - 4 years old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Urine	Detected and Quantified			0	9.04	umol/mmol creatinine	Children (4 - 13 years old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Blood	Detected and Quantified			19	100	uM	Children (6 - 18 years old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Cerebrospinal fluid (csf)	Detected and Quantified			2.3	11.2	uM	Adolescent (>11 years old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Cerebrospinal fluid (csf)	Detected and Quantified			2.3	9.5	uM	Children (0 - 10 years old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Blood	Detected and Quantified			26	117	uM	Infant (1 - 3 months old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Blood	Detected and Quantified			27	100	uM	Children (3 months - 6 years old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Blood	Detected and Quantified			38	207	uM	Newborn (0-30 days old)	Both	Normal	HMDB	BC Children's Hospital Biochemical Genetics Lab
Human Urine	Detected and Quantified	0.593	0.340			umol/mmol creatinine	Children (1 - 13 years old)	Not Specified	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Urine	Detected and Quantified	0.78	0.36			umol/mmol creatinine	Children (1-13 years old)	Male	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Urine	Detected and Quantified	0.787	0.373			umol/mmol creatinine	Children (1 - 13 years old)	Not Specified	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Urine	Detected and Quantified	2.6	1.30			umol/mmol creatinine	Adult (>18 years old)	Female	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Urine	Detected and Quantified	2.733	1.313			umol/mmol creatinine	Adult (>18 years old)	Female	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Urine	Detected and Quantified	3.1	1.46			umol/mmol creatinine	Adult (>18 years old)	Male	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Urine	Detected and Quantified	3.147	1.487			umol/mmol creatinine	Adult (>18 years old)	Male	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Urine	Detected and Quantified	3.34		0	6.67	umol/mmol creatinine	Newborn (0-30 days old)	Both	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Cerebrospinal fluid (csf)	Detected and Quantified	3.7	1.0			uM	Adult (>18 years old)	Both	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Blood	Detected and Quantified	47.0	14.0			uM	Children (1-13 years old)	Female	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Blood	Detected and Quantified	54	18			uM	Adult (>18 years old)	Female	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Blood	Detected and Quantified	54.0	18.0			uM	Adult (>18 years old)	Female	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Blood	Detected and Quantified	65	18			uM	Adult (>18 years old)	Male	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Blood	Detected and Quantified	65.0	18.0			uM	Adult (>18 years old)	Male	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Blood	Detected and Quantified	90.0	20.0			uM	Newborn (0-30 days old)	Not Specified	Normal	HMDB	Geigy Scientific Tables, 8th Rev edition, pp. 130. Edited by C. Lentner, West Cadwell, N.J.: Medical education Div., Ciba-Geigy Corp. Basel, Switzerland c1981-1992.
Human Blood	Detected and Quantified			27	86	uM	Adult (>18 years old)	Not Specified	Normal	HMDB	Lysinuric Protein Intolerance and Other Cationic Aminoacidurias. The metabolic and molecular bases of inherited disease, 7/e; Editors: C.R.Scriver, A.L.Beaudet, W.S.Sly, D.Valle; McGraw-Hill Inc. (1995) DOI: 10.1036/ommbid.225
Human Saliva	Detected and Quantified	12.5	10.8			uM	Adult (>18 years old)	Not Specified	Normal	HMDB	Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles. Metabolomics (2013) 9:454–463. DOI 10.1007/s11306-012-0464-y
Human Saliva	Detected and Quantified	14.2	11.1			uM	Adult (>18 years old)	Female	Normal	HMDB	Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles. Metabolomics (2013) 9:454–463. DOI 10.1007/s11306-012-0464-y
Human Saliva	Detected and Quantified	16.7	14.6			uM	Adult (>18 years old)	Not Specified	Normal	HMDB	Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles. Metabolomics (2013) 9:454–463. DOI 10.1007/s11306-012-0464-y
Human Saliva	Detected and Quantified	18.3	14.2			uM	Adult (>18 years old)	Not Specified	Normal	HMDB	Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles. Metabolomics (2013) 9:454–463. DOI 10.1007/s11306-012-0464-y
Human Saliva	Detected and Quantified	28.9	33.1			uM	Adult (>18 years old)	Female	Normal	HMDB	Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles. Metabolomics (2013) 9:454–463. DOI 10.1007/s11306-012-0464-y
Human Saliva	Detected and Quantified	28.9	33.1			uM	Adult (>18 years old)	Not Specified	Normal	HMDB	Physiological and environmental parameters associated with mass spectrometry-based salivary metabolomic profiles. Metabolomics (2013) 9:454–463. DOI 10.1007/s11306-012-0464-y
Human Saliva	Detected and Quantified	65.34	15.64			uM	Adult (>18 years old)	Both	Normal	HMDB	https://doi.org/10.1007/s11306-015-0840-5
Human Blood	Detected and Quantified			30.00	110.0	uM	Adult (>18 years old)	Both	Normal	HMDB	Molecular You (https://molecularyou.com)
Human Urine	Detected and Quantified	<1.92				umol/mmol creatinine	Children (1-13 years old)	Not Specified	Normal	HMDB	Mayo Clinic (https://neurology.testcatalog.org/show/AAPD)
Human Urine	Detected and Quantified	<2.036				umol/mmol creatinine	Adolescent (13-18 years old)	Not Specified	Normal	HMDB	Mayo Clinic (https://neurology.testcatalog.org/show/AAPD)
Human Urine	Detected and Quantified	<2.83				umol/mmol creatinine	Adult (>18 years old)	Not Specified	Normal	HMDB	Mayo Clinic (https://neurology.testcatalog.org/show/AAPD)
Human Urine	Detected and Quantified	<29.97				umol/mmol creatinine	Infant (0-1 year old)	Not Specified	Normal	HMDB	Mayo Clinic (https://neurology.testcatalog.org/show/AAPD)
Human Urine	Detected and Quantified	<4.98				umol/mmol creatinine	Children (1-13 years old)	Not Specified	Normal	HMDB	Mayo Clinic (https://neurology.testcatalog.org/show/AAPD)
Human Urine	Detected and Quantified	<7.92				umol/mmol creatinine	Children (1-13 years old)	Not Specified	Normal	HMDB	Mayo Clinic (https://neurology.testcatalog.org/show/AAPD)
Human Epidermis	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	34986597
Human Intestine	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	34986597
Human Liver	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	34986597
Human Prostate	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	34986597
Human Urine	Detected but not Quantified						Adult (>18 years old)	Both	Normal	HMDB	24023812
Human Urine	Detected but not Quantified						Adult (>18 years old)	Both	Normal	HMDB	21389975
Human Saliva	Detected but not Quantified						Adult (>18 years old)	Both	Normal	HMDB	20300169
Human Feces	Detected but not Quantified						Not Specified	Not Specified	Normal	HMDB	20669995
Human Feces	Detected but not Quantified						Infant (0-1 year old)	Both	Normal	HMDB	22411374
Human Feces	Detected but not Quantified						Not Specified	Both	Normal	HMDB	25486321
Human Blood	Detected but not Quantified						Adult (>18 years old)	Both	Normal	HMDB	22892715
Human Feces	Detected but not Quantified						Children (1-13 years old)	Both	Normal	HMDB	24130822
Human Feces	Detected but not Quantified						Children (6 - 18 years old)	Both	Normal	HMDB	27609529
Human Feces	Detected but not Quantified						Children (6 - 18 years old)	Not Specified	Normal	HMDB	27609529
Human Sweat	Detected but not Quantified						Adult	Both	Normal	HMDB	26755145
Human Feces	Detected but not Quantified						Adult (>18 years old)	Both	Normal	HMDB	27543620
Human Feces	Detected but not Quantified						Adult (>18 years old)	Both	Normal	HMDB	25037050
Human Feces	Detected but not Quantified						Adult (>18 years old)	Not Specified	Normal	HMDB	25985090
Human Feces	Detected but not Quantified						Adult (>18 years old)	Both	Normal	HMDB	29808030
Human Blood	Detected but not Quantified						Adult (>18 years old)	Both	Normal	HMDB	32966057

External Links

HMDB ID

HMDB0000214

DrugBank ID

DB00129

Phenol Explorer Compound ID

Not Available

FooDB ID

KNApSAcK ID

Chemspider ID

KEGG Compound ID

BioCyc ID

BiGG ID

Wikipedia Link

METLIN ID

PubChem Compound

6262

PDB ID

Not Available

ChEBI ID

15729

Food Biomarker Ontology

Not Available

References

Synthesis Reference

Not Available

General References

Mayer UM: [Hyperornithinaemia in patients with retinal dystrophy]. Ophthalmologe. 2003 Jan;100(1):55-61. doi: 10.1007/s00347-002-0657-2. [PubMed:12557027 ]
Peng CT, Wu KH, Lan SJ, Tsai JJ, Tsai FJ, Tsai CH: Amino acid concentrations in cerebrospinal fluid in children with acute lymphoblastic leukemia undergoing chemotherapy. Eur J Cancer. 2005 May;41(8):1158-63. doi: 10.1016/j.ejca.2005.02.013. Epub 2005 Apr 14. [PubMed:15911239 ]
Cynober LA: Plasma amino acid levels with a note on membrane transport: characteristics, regulation, and metabolic significance. Nutrition. 2002 Sep;18(9):761-6. doi: 10.1016/s0899-9007(02)00780-3. [PubMed:12297216 ]
Gray RG, Green A, Hall S, McKeown C: Prenatal exclusion of the HHH syndrome. Prenat Diagn. 1995 May;15(5):474-6. doi: 10.1002/pd.1970150511. [PubMed:7644438 ]
Peters T, Thaete C, Wolf S, Popp A, Sedlmeier R, Grosse J, Nehls MC, Russ A, Schlueter V: A mouse model for cystinuria type I. Hum Mol Genet. 2003 Sep 1;12(17):2109-20. doi: 10.1093/hmg/ddg189. [PubMed:12923163 ]
Silwood CJ, Lynch E, Claxson AW, Grootveld MC: 1H and (13)C NMR spectroscopic analysis of human saliva. J Dent Res. 2002 Jun;81(6):422-7. doi: 10.1177/154405910208100613. [PubMed:12097436 ]
Jensen TG, Sullivan DM, Morgan RA, Taichman LB, Nussenblatt RB, Blaese RM, Csaky KG: Retrovirus-mediated gene transfer of ornithine-delta-aminotransferase into keratinocytes from gyrate atrophy patients. Hum Gene Ther. 1997 Nov 20;8(17):2125-32. doi: 10.1089/hum.1997.8.17-2125. [PubMed:9414260 ]
Sell DR, Monnier VM: Ornithine is a novel amino acid and a marker of arginine damage by oxoaldehydes in senescent proteins. Ann N Y Acad Sci. 2005 Jun;1043:118-28. doi: 10.1196/annals.1333.015. [PubMed:16037230 ]
Nicholson JK, O'Flynn MP, Sadler PJ, Macleod AF, Juul SM, Sonksen PH: Proton-nuclear-magnetic-resonance studies of serum, plasma and urine from fasting normal and diabetic subjects. Biochem J. 1984 Jan 15;217(2):365-75. doi: 10.1042/bj2170365. [PubMed:6696735 ]
Stadler S, Gempel K, Bieger I, Pontz BF, Gerbitz KD, Bauer MF, Hofmann S: Detection of neonatal argininosuccinate lyase deficiency by serum tandem mass spectrometry. J Inherit Metab Dis. 2001 Jun;24(3):370-8. doi: 10.1023/a:1010560704092. [PubMed:11486903 ]
Engelborghs S, Marescau B, De Deyn PP: Amino acids and biogenic amines in cerebrospinal fluid of patients with Parkinson's disease. Neurochem Res. 2003 Aug;28(8):1145-50. doi: 10.1023/a:1024255208563. [PubMed:12834252 ]
Gokmen SS, Aygit AC, Ayhan MS, Yorulmaz F, Gulen S: Significance of arginase and ornithine in malignant tumors of the human skin. J Lab Clin Med. 2001 May;137(5):340-4. doi: 10.1067/mlc.2001.114543. [PubMed:11329531 ]
Hagenfeldt L, Bjerkenstedt L, Edman G, Sedvall G, Wiesel FA: Amino acids in plasma and CSF and monoamine metabolites in CSF: interrelationship in healthy subjects. J Neurochem. 1984 Mar;42(3):833-7. doi: 10.1111/j.1471-4159.1984.tb02756.x. [PubMed:6198473 ]
Sreekumar A, Poisson LM, Rajendiran TM, Khan AP, Cao Q, Yu J, Laxman B, Mehra R, Lonigro RJ, Li Y, Nyati MK, Ahsan A, Kalyana-Sundaram S, Han B, Cao X, Byun J, Omenn GS, Ghosh D, Pennathur S, Alexander DC, Berger A, Shuster JR, Wei JT, Varambally S, Beecher C, Chinnaiyan AM: Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression. Nature. 2009 Feb 12;457(7231):910-4. doi: 10.1038/nature07762. [PubMed:19212411 ]
Morizono H, Woolston JE, Colombini M, Tuchman M: The use of yeast mitochondria to study the properties of wild-type and mutant human mitochondrial ornithine transporter. Mol Genet Metab. 2005 Dec;86(4):431-40. doi: 10.1016/j.ymgme.2005.08.013. Epub 2005 Oct 26. [PubMed:16256388 ]

Showing metabocard for Ornithine (MMDBc0000072)

MOL for #<Metabolite:0x00007f46c01950d8>

3D MOL for #<Metabolite:0x00007f46c01950d8>

3D SDF for #<Metabolite:0x00007f46c01950d8>

3D-SDF for #<Metabolite:0x00007f46c01950d8>

PDB for #<Metabolite:0x00007f46c01950d8>

3D PDB for #<Metabolite:0x00007f46c01950d8>

SMILES for #<Metabolite:0x00007f46c01950d8>

INCHI for #<Metabolite:0x00007f46c01950d8>

Structure for #<Metabolite:0x00007f46c01950d8>

3D Structure for #<Metabolite:0x00007f46c01950d8>