| MMDBm0810309 | Anaerococcus vaginalis ATCC 51170 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001963 | Thermotoga maritima MSB8 | Bacteria | Thermotogae | Not Available | Not Available | RHEA |
| MMDBm0000107 | Cloacibacillus evryensis DSM 19522 | Bacteria | Synergistetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0001295 | Borrelia burgdorferi B31 | Bacteria | Spirochaetes | Human | Not Available | RHEA |
| MMDBm0002723 | Treponema pallidum subsp. pallidum str. Nichols | Bacteria | Spirochaetes | Human | Not Available | RHEA |
| MMDBm0101577 | Schizosaccharomyces pombe 972h- | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000583 | Saccharomyces cerevisiae | Fungi | Ascomycota | Human Feces | Unknown | YMDB |
| MMDBm0098378 | Saccharomyces cerevisiae S288C | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098571 | Saccharomyces cerevisiae YJM789 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0000584 | Candida albicans | Fungi | Ascomycota | Human Feces | Not Available | RHEA |
| MMDBm0098376 | Saccharomyces cerevisiae RM11-1a | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0098297 | Saccharomyces cerevisiae AWRI1631 | Fungi | Ascomycota | Not Available | Not Available | RHEA |
| MMDBm0639412 | Schlesneria paludicola DSM 18645 | Bacteria | Planctomycetes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0881918 | Candidatus Nitrososphaera gargensis Ga9.2 | Archaea | Thaumarchaeota | Not Available | Metabolic reconstruction | VMH |
| MMDBm0809729 | Veillonella atypica ACS-049-V-Sch6 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809098 | Megamonas funiformis YIT 11815 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809739 | Veillonella dispar ATCC 17748 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809578 | Dialister invisus DSM 15470 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000216 | Megamonas hypermegale ART12/1 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809204 | Selenomonas ruminantium AC2024 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0000287 | Veillonella parvula DSM 2008 | Bacteria | Firmicutes | Human | Metabolic reconstruction | VMH |
| MMDBm0002107 | Megasphaera elsdenii DSM 20460 | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0809759 | Veillonella seminalis ACS-216-V-Col6b | Bacteria | Firmicutes | Human Feces | Metabolic reconstruction | VMH |
| MMDBm0163168 | Cunninghamella elegans | Fungi | Mucoromycota | Not Available | Not Available | RHEA |
| MMDBm0881919 | Halococcus morrhuae DSM 1307 | Archaea | Euryarchaeota | Not Available | Metabolic reconstruction | VMH |
